Array 1 17768-18814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFR010000327.1 Phocaeicola vulgatus strain 1001095H_141210_H7 NODE_709_length_25497_cov_9.00252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 17768 47 97.9 30 ...A........................................... ACTTGCATTCTTGGCTATTATCAGGCTGGT 17845 47 100.0 30 ............................................... CCTCGGGTGTACGCTTAGCACTCGTTACTG 17922 47 100.0 30 ............................................... TACCCGCGCTGACTTCATGCCCCATCATAT 17999 47 100.0 30 ............................................... TATTGTATCAGGAGCTAATCACATATCGCA 18076 47 100.0 30 ............................................... TTGAGCCTGTAAATAGCTGAGTTCCTCTGC 18153 47 100.0 29 ............................................... TGATGTTCAAAATTATATTAAGCGTTTAC 18229 47 100.0 30 ............................................... GTTAGAAGTTACAACTATTATTAACCTTTT 18306 47 100.0 30 ............................................... AAATATGCCGGGTATTCTTTCAACGTGTCT 18383 47 100.0 30 ............................................... AAGTTTTTAAAAGTCCCTCAGTAGATTTAT 18460 47 100.0 30 ............................................... TCATATTTTCAGAACAAACCGAAGAAAGCG 18537 47 100.0 30 ............................................... TTAAAAATGTTACTTAATTAATTTCTCTAT 18614 47 100.0 30 ............................................... TCCCGGTTAATACGGCTGCTTATACCCGTA 18691 47 100.0 30 ............................................... CTGCCGTTCCGACAGAGTTTGACAATGGCG 18768 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGGTTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CGGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGTAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //