Array 1 15849-14427 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJON01000014.1 Streptococcus intermedius strain KLC09 D8828_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15848 36 100.0 30 .................................... AAATCAAGAAATAAATACAATTAAACAATA 15782 36 100.0 30 .................................... TCAATGTGAAGCCCGACGCATGGCTCATCT 15716 36 100.0 30 .................................... ATTAAATTCAATGCTTGGATTAAATTCTTT 15650 36 100.0 30 .................................... ACTTGCCCAACACGTCCCCCTTAAGTCAGC 15584 36 100.0 30 .................................... AAAAGCCAAAAGTTCGTATTCTCGTGAGTT 15518 36 100.0 30 .................................... CAGAGCTTGAAAAGCCAAAGGACGAACCAA 15452 36 100.0 30 .................................... CAAATTATTAAGAGATATAAACCTCAATAC 15386 36 100.0 30 .................................... AATCCTTGCACATTTACTACAATGTTCTTT 15320 36 100.0 30 .................................... TCTTTTCAAATTTCATTTGTTGGGATAAGA 15254 36 100.0 30 .................................... TAAGCAAGCCTGACGATTGGGATATTTACT 15188 36 100.0 30 .................................... AACCAAAAAATACAGAATGCTTGCGGTCAA 15122 36 100.0 30 .................................... ATATTTGAATATTGTTTGTAAAGGTGGACG 15056 36 100.0 30 .................................... AACTCATCAGCAGGTTGTGACAGTTCACGC 14990 36 100.0 30 .................................... CAATATAACTTCTATCGCAAGAAGAGGTTG 14924 36 100.0 30 .................................... ATTTGGTGAGTGGAAAAATCAAAACAAAAT 14858 36 100.0 30 .................................... AAACTTGAATTAATACTTCGGCAAGGTCGA 14792 36 100.0 30 .................................... AAAATAAAGTGGTATACCCCGCAAACCCTT 14726 36 100.0 30 .................................... GACCCCATCATCAAAGATTTTAGTTGCATT 14660 36 100.0 30 .................................... TGCAGTTTTAGGAAAAAAGTTGCTGGATTT 14594 36 100.0 30 .................................... CTTGTACAACGATTATGCCTAAATTAGGGT 14528 36 100.0 30 .................................... TAGCTATTCCGAAAGGTGATACTCATGATT 14462 36 94.4 0 ..............................T....T | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TCAATTAAATGAAAAGCCTGAAGTGAAGTCAATGTTGGAAAAGCTTGTTTCAACGATAACAGAGTTGCTTGCATTTGAGTGCTTAGAAAATGAATTGGATTTGGAATATGATGAGATTACGATATTAGAACTGATTGATGCTTTGGGAGTCAAGATTGAAACGGCTAGTGATACCGTGTTTGATAAAAGCTTAGAAATTATTCAAGTTTTTAAATATTTATCGAAAAAGAAGTTGTTGATTTTTGTGAATGTGTCGGCTTACTTCTCCGAAGATGAATTGGTCAAATTAATCGAATATATTGAATTAAATAATATCAATGTTTTGTTCATAGAGCCAAGGAAAGTTTATCAATTTCCGCAATATGTCTTGGATCAAGACTATTTCTTAAACGGCGAGAATATGGTATAATAAAAATGATAATAAGGAGCCATTTGATCTGAAGTCTAGCTGAGACAAATAGCGCGATTACGAAATTTCGAGACGAAAATTCGTCTACGAG # Right flank : ATATATGTGGTTTTTTTAATTATTCACAAAGTATTACTCTTTCTTCAAGAATTTTTTAGTGAAAAATGCTACAATTAGATAAATAAAGAAAGGGTTGTCTGTATGGAACATAAAAAGAAGGATTTTAGCCTATCATGGTTTTTTCGATGGTTTTTGGATAACAAAGCAATCACCGGTTTTTTGGTGATTTTATTATTGGGATTGAATATTTTTGTATTAAGCAAAATTAGTTTTATTTTCCTTCCTGTCTTAGAATTTATCGGAGTTATTATGCTGCCAGTTATTCTAGCGGGTCTTTTGTATTATTTATTAAATCCAATTGTTGATTTTATGGAAAAGCACAGAATCAACCGCTTAGTCGCGATTACGATTGTCTTTATTTTGATTGCATTACTTTTAATTTGGGGATTAGCTGTGGCTATTCCGAGTTTGCAGCATCAGATAGTTAGCTTTGCAAAAAATTTGCCAGCTAATTTGAAAAAATCGAATAAAATTATTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //