Array 1 121896-120143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUP010000027.1 Streptococcus thermophilus strain Nect1 Contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 121895 36 100.0 31 .................................... AAACACTTGGTCCATTACTCAGTCCTCAGAG 121828 36 100.0 30 .................................... AGATACGTCAGTTGTGTTTAGTCTTGCTAC 121762 36 100.0 30 .................................... ATTCGGTGTACCTGAATATACTAGTCGTGA 121696 36 100.0 30 .................................... AAACCGTTCGACAATTACAAGAGTGCGGAA 121630 36 100.0 30 .................................... TATTAAAGGTCCAGAAGGCCTTTCAACTGA 121564 36 100.0 30 .................................... TATCTCTGAAGGTAAAGCTGAAGGAAATAA 121498 36 100.0 30 .................................... TCCTAGCGATTACTCATGGACACTTGTAAA 121432 36 100.0 30 .................................... GGGTGAAAACCCTAATAATACCACATTGAA 121366 36 100.0 30 .................................... ATTTAAAGCAGGAATGTTCTTCAGTTTCTC 121300 36 100.0 30 .................................... CGAGTTTATGCTCTTGAATGGTTGTCGTAT 121234 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 121168 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 121102 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 121036 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 120970 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 120904 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 120838 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 120772 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 120706 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 120640 36 100.0 30 .................................... ACGGTCTGTATCGAAAAAGACAACTTGGCT 120574 36 100.0 30 .................................... CTGGTAACTTTGAAATCTAACGCAGAATAG 120508 36 100.0 30 .................................... GAACTTTCAGCTTATAACACGCATAAGAAC 120442 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 120376 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 120310 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 120244 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 120178 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 124859-127201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUP010000008.1 Streptococcus thermophilus strain Nect1 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 124859 36 100.0 30 .................................... GAAATTGAAATAATTCGAGAAATAGAACTC 124925 36 100.0 30 .................................... TATTACTCTTAACTGGTTGTTCAGAAGCAA 124991 36 100.0 30 .................................... CATTTAAGAGCATGTTAGACAAAGAGATAA 125057 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 125123 36 100.0 30 .................................... ATATTCATATTCCCTGCTCATGTTTGATAG 125189 36 100.0 30 .................................... GATAGCAATAGCTTTCTTGACCTAAAAGAC 125255 36 100.0 30 .................................... GAGGTCTGTAATTTCATTCCCTCGTAATCT 125321 36 100.0 29 .................................... AAAGGTTTCTCTAAACACATGCGGAATAT 125386 36 100.0 30 .................................... GTCATAGTACCAAGCACAAATAACGTTAGT 125452 36 100.0 30 .................................... GTGTATTTAGTAATGGTGATTTTTTAAATT 125518 36 100.0 30 .................................... CATTCATTTTTTATATATCAATAAAACTTT 125584 36 100.0 30 .................................... GGGGATTCTTATTTCACTGTAGTTACGATG 125650 36 100.0 30 .................................... CAAAAATTGATGTCACAATTAATAAAGGTG 125716 36 100.0 30 .................................... CTATTTCTGACAATGGTTGAAATTGTGTTC 125782 36 100.0 29 .................................... CTTTTTTTAAATTAATTTATCGTAAGCAA 125847 36 100.0 30 .................................... AACAAACTTATGAGAACGGTTGAACGGCTT 125913 36 100.0 30 .................................... AGCCCGCTTATTGCTTCAGTTGGTTTATAT 125979 36 100.0 30 .................................... TGGAGCAACAAGAATGATTAACTCTAATGC 126045 36 100.0 30 .................................... TTTGATGGATATCATTGATAAACTATACGA 126111 36 100.0 30 .................................... TAACGAAAGCAATACCAATCGTGCTAAAGC 126177 36 100.0 30 .................................... TATTCCTATGGTCGATATTCGAACAGTCAA 126243 36 100.0 30 .................................... CAGGGGACAAGGACTTTGACCCAACAGAAG 126309 36 100.0 30 .................................... AGAAACACCTAATGGTCTCTTAGAACCCGA 126375 36 100.0 30 .................................... AAGAAGTTAAAGACAACTTTGTTAAAGACT 126441 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 126507 36 100.0 30 .................................... CGGAATGGTATAAAGAATACAAAGAAAACG 126573 36 100.0 29 .................................... CCAAGTATCACGCAAAGAAATCAACGAGA 126638 36 100.0 31 .................................... TTGACCTGTTTATCCTTGTTAACTAGAATAG 126705 36 100.0 30 .................................... AGAGCACTAGCATACTGTTTAGTCCGAACG 126771 36 100.0 30 .................................... AGGCAAGGTATTTGATCCAACAGAAGCCAA 126837 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 126902 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 126968 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 127034 36 100.0 30 .................................... TAATAGTTTACCAAATCGTCCTTGTTCCAA 127100 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 127166 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //