Array 1 1049787-1054187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACVCI010000001.1 Pluralibacter gergoviae isolate ECO77-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1049787 29 100.0 32 ............................. GGGTTCTGGAGGTTGTGAAGTTTTGAATGGTG 1049848 29 100.0 32 ............................. AAACTGGCTGTCTTCGGCGTTGAGCCCCATCG 1049909 29 100.0 32 ............................. CTGTATGACACCATAACCTTTTATCATTCTTC 1049970 29 100.0 32 ............................. TCCAAATCTACGGTTAGCAAAACGCAGATGCA 1050031 29 100.0 32 ............................. GTCGAGAGCTGCTCGGTAGAATTGAAGCTCTG 1050092 29 100.0 32 ............................. GCGGTTGCTCAGATATAGCCGATCAGCCGCTG 1050153 29 100.0 32 ............................. TAACCAGTAACGCCAGCGGTAGTTAGTTCGTA 1050214 29 100.0 32 ............................. TAAAATGCCCATCGTGCGGATTTGTTAATGAA 1050275 29 100.0 32 ............................. ATCAGCATTGACCATCAGTCCCACGCCCTGCT 1050336 29 100.0 32 ............................. AACTATGTAGTTAATGGTGAGGTTTTGAGCAT 1050397 29 100.0 32 ............................. TGATCGCGTCACTCGTTCTGCCTCCGCTGTAA 1050458 29 100.0 32 ............................. GCCTGCAACATGGTCGTCCTGAAAGCACCGCT 1050519 29 96.6 32 ............................A CGCTTGCCGATTACGCGAAACTGCGCCCGGCC 1050580 29 100.0 32 ............................. GCTAAAGAGTAGCCCTGTACCATGCCTGCCAG 1050641 29 100.0 32 ............................. AGTTTAGCGTTACCAACAAGCAGAAGCGCATC 1050702 29 100.0 32 ............................. CGTAACCCGGATAACGTTGTGATCCTGGCCGG 1050763 29 100.0 32 ............................. CTCCTATACCGGAGTGTGGCCGTTTAACGCTA 1050824 29 100.0 32 ............................. ATCCGCCCGGCCATACGCCAGTGTCAGGTTGA 1050885 29 100.0 32 ............................. CGCATGTCGCAGGCCAGCCGCAAGGGGAGAAT 1050946 29 100.0 32 ............................. ACCTTAGCCATGCGCCCCGCACCAGCACCGGC 1051007 29 100.0 32 ............................. CGCTGGGAGAGATTGACGATGAGGTTACTGAG 1051068 29 100.0 32 ............................. ATCGTCATCCTCCAGCAGGTCGTTTAGCGTGC 1051129 29 100.0 32 ............................. CTGGACGAGTGGCTGAGCGATGTAGAGTATAA 1051190 29 100.0 32 ............................. CAGGCGGGCGATCTCCTTTTTAGAGATATTAT 1051251 29 100.0 32 ............................. GCCTCCTGTTGGGGTCAACGATGCAAGCTGCG 1051312 29 100.0 32 ............................. ATGTGCCCTGACGTGCCAACGGTGTAATCATC 1051373 29 100.0 32 ............................. GGAGAGGCGGCGACCGTCGAGGGGAAAAAGAC 1051434 29 100.0 32 ............................. GCGCCAGGGAAAGGGCCGCCCCTTCGGGAGCC 1051495 29 100.0 32 ............................. AGAACCTCTTGATGACGAGTTACTTTTAAAAA 1051556 29 100.0 32 ............................. TCACTGTAATTAGACTAATTTGACCAAATAAC 1051617 29 100.0 32 ............................. CCACCTCGATCAGTTCTTTATCTGCCAGCAAT 1051678 29 100.0 32 ............................. GAAAAACAACGGCTGATATAGCCAGCAGGTTA 1051739 29 100.0 32 ............................. CTCGATGACCTGCAAGACGGCCTCGGCGATCT 1051800 29 100.0 32 ............................. GGCGGCAGTAAGGTGCGCCAGCAGGCAGCGGT 1051861 29 100.0 32 ............................. TTGCAGCACGAGGCGCGGGCGGAGGGCGAGGC 1051922 29 100.0 32 ............................. GCTGAATATTTCACCGTCGCGCGTACCGATGG 1051983 29 100.0 32 ............................. GTCCAGCCGGATGACGTATTGAAATTAATGGT 1052044 29 100.0 32 ............................. CGCATCATCGCCGGACTCGGTGATGCAGATAT 1052105 29 100.0 32 ............................. GTACGGTCATGGTGCTCTCCGAGTTAAGGGCG 1052166 29 100.0 32 ............................. AATGGTTGAGCATGGAGGCGCGGCAGGCGTTC 1052227 29 100.0 33 ............................. TGGCATAAGAGCCACGCGGATAACTTTTTGACT 1052289 29 100.0 32 ............................. AGGCTGTTCACCAGGTCGGCATAGTAAACGCC 1052350 29 100.0 32 ............................. TAGCCCAGGAATGCGCCCGTGGTTTTATTTTT 1052411 29 100.0 32 ............................. AATACCCGGACGCCATCGCCGCCAGCCTTTCG 1052472 29 100.0 32 ............................. AACAAGAATGGTGACATCACGGCGCAGGCGCA 1052533 29 100.0 32 ............................. AAACACTACCCGTTCCTGACCACTGAGGAAAT 1052594 29 100.0 32 ............................. GGGTGGCCAGTAGGTCAATTCCCGGCACTGAT 1052655 29 100.0 32 ............................. CAGACGAGAATTTTATCCCCAGCACTCCAGCG 1052716 29 100.0 32 ............................. ACGGTGAGTGCTGTTCCGACCCGTCAATCTCG 1052777 29 100.0 32 ............................. CCGAAGTTTGTGGCGCCGCAGCCGACACAGAA 1052838 29 96.6 32 ............................A CTGGAGCCTTTTAAAACGCGCATCCTTCGGGC 1052899 29 100.0 32 ............................. GCCGGCCAGGGTTGCGCGGGCGCGGTTCTCTG 1052960 29 100.0 32 ............................. ACGAATTTATCCGGCTTGTTAACGGCAAGCCG 1053021 29 96.6 32 ............T................ GATGTGACGGCCGCACCGCGAACGGCCCAGGT 1053082 29 100.0 32 ............................. ATGGTCGATTAACCAGAACAGGATCTGCTGCT 1053143 29 100.0 32 ............................. TCCGGCTCATCGACTATCTGCGGCGGCGGCAG 1053204 29 100.0 32 ............................. CGCCGTTATCCATCCAGTATGCCGCCGGGTCA 1053265 29 100.0 32 ............................. GCGGGACTCCCAATACACGGACGGCAGGCCGA 1053326 29 100.0 32 ............................. TCAGCGCGTCCGGGCGGGCAAACACAAAATCG 1053387 29 100.0 32 ............................. GGGAGAAGCTGATTTTATAAAGCTCCAGAATC 1053448 29 100.0 32 ............................. GTCCCATCAGACGAGTACCCCTTAATGTGCTC 1053509 29 96.6 32 ................A............ CGCCTTGATCCACGGTGATTTAGTGATCATGA 1053570 29 100.0 32 ............................. GTTGGTGGGGAACGGAAGAGAAAATTGATACC 1053631 29 100.0 32 ............................. CCCGATACCCGAATTAAAGACCTGACCGAAGA 1053692 29 96.6 32 ...........A................. CGGCAACCGTCGAGGGGAAAAAGACCTGGTAT 1053753 29 100.0 32 ............................. CGGGTTAGGCTTGATGCCATGACGTTTAGCAA 1053814 29 100.0 32 ............................. TAACCAGAATACGCCGGACTGATAAGGTGATG 1053875 29 100.0 32 ............................. CAAAATGATTTATTCAGAAAACGAGAAATGTG 1053936 29 100.0 32 ............................. GCGGGGTTGGAGCCGTGGCTTGTGCCGGGCAT 1053997 29 100.0 32 ............................. TTGGGATGCGAGAAAACGACGGTCTGCTTGAT 1054058 29 96.6 72 ............T................ GCTGGCTATCACGCCCACGGCCGCGCGTCCCGGTGTTCACCGCGCCAGGCAATCAGCATGGGAGCTTACCGT 1054159 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ======================================================================== ================== 72 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGAAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGGGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGGCTACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATTAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : GATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTGTGATGAGAACGAATATTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGCTGGAAATGGCCGTTATAGCACGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGCATCGAGGCGTTAAACGGTTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCGTTAACACCGGTGATTGAAATCGACCAGATTGAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1064853-1068542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACVCI010000001.1 Pluralibacter gergoviae isolate ECO77-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1064853 29 100.0 32 ............................. CGCGAATATTCATCCACCTTGGAAGAATTAGC 1064914 29 100.0 32 ............................. CAGCACCGCAAAATACCGGGTACATAGGGGGG 1064975 29 100.0 32 ............................. ACAATCGACCCTGTGCAGCAGTAACCTTTGCT 1065036 29 100.0 32 ............................. GCTGAAGCCGCTGGTAAGAAAAAGGTTACTAA 1065097 29 100.0 32 ............................. GTTTCGCCGTTCGGGGTCCAGTACGCCTGCTC 1065158 29 100.0 32 ............................. TACTTTCAGTCGGGATGAAGATGAAATGTCCA 1065219 29 100.0 32 ............................. CATCTTCATAGCACGCGCTCCTTAACCCAGCC 1065280 29 100.0 32 ............................. AGTATGAGCGCATTGAATCATTCATTAATGAT 1065341 29 100.0 32 ............................. TTACTAAATTACGCCATGAAACAAGCTCACTC 1065402 29 100.0 32 ............................. TAAATGGAACACCCGCAACGGCCACCTCTACA 1065463 29 100.0 32 ............................. TTTGCGCGACTGGCTAATGACTTTAAGCAATA 1065524 29 100.0 32 ............................. TTGTTAACAGGGATTTACCGGAGTATCCATAA 1065585 29 100.0 32 ............................. TTAACGACCGACGTTGCGGTAACATGGAACCT 1065646 29 100.0 32 ............................. ATGCCAGGGGTTCCAAAAGAGACGGGTAATGT 1065707 29 100.0 32 ............................. GCCAGTAGTTAACCGGCCTCATCGTCTCGTGC 1065768 29 100.0 32 ............................. CCCCACGACGTTAATCGCAGGGCTTGAATTGG 1065829 29 100.0 32 ............................. TCGGGGGCGGGGTTGTATTTTGCTCTGCCGGT 1065890 29 100.0 32 ............................. CCTCGGCGGGCGAGGTCTTGCTGGCCTTCCAC 1065951 29 100.0 32 ............................. AAGTTTAACCGGTCGCATATTGCGGCCTTTTT 1066012 29 100.0 32 ............................. AGACCGCGCAGTTATGTTTTTAATTTCAGCGT 1066073 29 96.6 32 ............................T GCCTGATATTCGACCACAGCGGCAGCGTTCAC 1066134 29 100.0 32 ............................. CTCATCTCCTTCTTAATGTTGCGGTCGATGAG 1066195 29 100.0 32 ............................. CCCAAACTAAAACCTCCGGGAATCGTTTCAAT 1066256 29 100.0 32 ............................. CCAGTTGCGGTGATATCCCCGGCATTAATCAT 1066317 29 100.0 32 ............................. GAGGGTGAGGTGAGGAAGAAAATCGCAGAGCG 1066378 29 100.0 32 ............................. CCGTTCACCCTGGACGATCACCGCAATCTGGT 1066439 29 100.0 32 ............................. GGAGACTGTGCAGCTATGGAGCTGATAAACCG 1066500 29 100.0 32 ............................. TGAACATTAGCGGCCATAATATGACCGAGTTC 1066561 29 100.0 32 ............................. TGATTAAAGCTGAGCTGCTGCGCAAGGCGCTG 1066622 29 100.0 32 ............................. CGCCACCTGACGATCCTCCGATAATCCTAATT 1066683 29 100.0 32 ............................. GGATTTAATCTTGGTCGGGTTGTTTTTGATGC 1066744 29 100.0 32 ............................. CGCTGATTACCGAGGGCTGGCACCCGATGACC 1066805 29 100.0 32 ............................. GGTCTGCGGGACAACAACGCGGCGCTGCTGGA 1066866 29 100.0 32 ............................. GGATAGGCCACCTGCTTGGTTATGTGAAACTT 1066927 29 100.0 32 ............................. CCCACTCAGGTATTTATCGGCCGCTGGGCGAA 1066988 29 100.0 32 ............................. AATATAACCCCGGAGATCTTCTTGGGTATCAG 1067049 29 100.0 32 ............................. AAAGGCCCGACCCGCGCCGAAGTAACGAAGCT 1067110 29 100.0 32 ............................. AGTCCGCCGACGCTATCATCGCGGAATGGGCT 1067171 29 100.0 32 ............................. CAGGCGGGTATCACCACCAATGAGGATCATCA 1067232 29 100.0 32 ............................. GTCGCCGTCTTCGAGAAGCTCGGGGATTCGGT 1067293 29 100.0 32 ............................. CAGAAAATATGACATGCCGGCATTGGCAATTT 1067354 29 100.0 32 ............................. GAGACTCGGAACTTTGAGGCTAACCAGGCCCA 1067415 29 96.6 32 ............................A GTGCGCGTAGGCGACAGGGTGCGGGATTACGC 1067476 29 100.0 32 ............................. GATGGATACCCAATCCTCACGCGCCTGGGTAT 1067537 29 100.0 32 ............................. GGACCAGCCAGACAGCAACGTCCAATTACAAT 1067598 29 100.0 32 ............................. CTGCCGCAGATTGCGCAAATGGACAACGAAGA 1067659 29 100.0 32 ............................. CGACATTTGCCAGCCATATTTGTACTCATCCC 1067720 29 100.0 32 ............................. TCACGAACGTGGCCAACGGCAATGTAGCTGGT 1067781 29 100.0 32 ............................. CGACAATTTGAACATAACGAGAACCCCGCCAC 1067842 29 100.0 32 ............................. GCGTGCGGAGTGACCGGTATTGAGAAGCGGAT 1067903 29 100.0 32 ............................. TTATCGAGACTAACCAGATAACCAACAGCGAG 1067964 29 93.1 32 .............T..............A CAAAATTATCTACCTGTCTTTTTCAATGCTTC 1068025 29 100.0 32 ............................. CCCACGTCCGGGAAGAACGTCACCTGCACGCC 1068086 29 100.0 32 ............................. CCCACGTCCGGGAAGAACGTCACCTGCACGCC 1068147 29 100.0 32 ............................. GGATTCGTCATAGCCCGTAATGAACGTTACAG 1068208 29 100.0 32 ............................. CTGACGCAGGCGATCTACAGTCTTCTTCGCCA 1068269 29 100.0 33 ............................. CCCGCTCACCAGCCGCTGCGCCTGCTCGCAATC 1068331 29 100.0 32 ............................. CTTGCTGCTCAGTCTGATAAGCGAGTGTCTGT 1068392 29 100.0 32 ............................. GCCGGGCGTTAACCCGGCCATTTTGTTCAGCC 1068453 29 100.0 32 ............................. GGGCGCCAGATATTTCTGCAGGGCGGTGGCCA 1068514 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 61 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGCGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCCGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCGGAGTCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : GCGTACGGCCAGACGGTTCTGGCTCAGTTCCAGCGTGTTCCCCCGTACTTACGGAAACAAAACCAACCTAACCGTGCCGCAATAGCTGACAATGCGCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCCGCACCAGCGGCAGCATTACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTCTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCATGCCAGCTGGTGCCCTCGGGGAAGGTGCGGGACTTGGCCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCCTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCAGGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGGTTGGAGGCGGCCGGTACGCCCCAGCGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3323871-3323464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACVCI010000001.1 Pluralibacter gergoviae isolate ECO77-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3323870 28 100.0 32 ............................ ACACCGCGTTTGCGTATGATTCCCCTGGATAA 3323810 28 100.0 32 ............................ TAACATTCGAGCCAGGTCGGCCTTGCGCGTGC 3323750 28 100.0 32 ............................ TGGCAAAAGACTACGGCGTCGCGCCCGATCCA 3323690 28 100.0 0 ............................ - Deletion [3323663] 3323662 19 57.1 32 ---------TCA................ AAAGAGCCAACAAACGTTGCCTACCGGGGATT 3323611 28 96.4 32 ...........C................ ACCGAGCTTCGTGACGTGAAAGCACAGCACAC 3323551 28 96.4 32 .............G.............. AGTTACAGCCGGGAAATGTTTACATCGAAGTT 3323491 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 93.7 28 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCCGTTAGGCTCGCGCAGCGCGGCCTCCGGCGACGGAAAGGCGATAGAATGACGTGACAGCTGAACCAGACGCATGCTCTACAACTCCGGGCCTGATAATGAAAGAAAGCGTAGCCTAAACTCGCTGTCTGAACTGGTATTACGCCCGCGTCTGCTCAGCTATTTGGCGTGCTTACCATGCGAAAAATTTAGCGTGTTGTCTATCACAATTATGTGGCAACAGCGGCAGTTTTTTGCAGTGCGCGATTTCATCGCCCGGATGGAGGCGCCAGTGGCGGAATCATCTGCGTTTAGCGGGCACATGCAGGCAGGCGCCGGTCAGCCGGGAATTAAATTTGGCAGATTTTTTCTCAGGCGATGCGTTGAGCAGACCTTTTTTTTCCGCTGTTGCTAAGTTATTGATTTATTGATGCCTGATTTGCAACGATGAAAAAAGGTATTGGCGCAAAATTGAGGGTAATTCTTTTTTGAAACAGTGCGCTATAGCGATTACCCTCTA # Right flank : ATTTTCCCCCTGATGGCTTAACTCCACTGAAACTATTGGGGATATGAGTGAGACGTAGCGATCACAGTGAGAGGCGTCAATTTTCAGACTCTAACCTGTAGAAGGATAGTCTGTTTCAGTGTAGTTTGAGTTTGAGGACGCTTATACAATGCATTTGTTAGCCACTGAGAAAATGAGATGACGCTTCATGATTACACCGTTAAGTCTTGCGATGCTATATACATAGAAGATATACCTTGTATCCTCCATCCCAACATCGCATATCGCTATCTGGAATACACCGGGATGCAAAACAGAATTATCCAGGAGTGGGATTTTCCTTCCGGTTATAAGGCGTATGCCGATCAGTATCGCCATTTTCATATAAACCATCCATTTATGGCATATCGCTCTGCTCTTAATGATATTAAATCGGGAAAGATTATACTGCTGAAAAGCCTTCATGGTGGTAAGGAAATATTTAGTGTTCAAACACGATCTGGTAATTTGTGTACAGATCT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3327023-3325555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACVCI010000001.1 Pluralibacter gergoviae isolate ECO77-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3327022 28 100.0 32 ............................ ATTCCCCCTCGATGCCCTGGATAAGCGGCGAC 3326962 28 100.0 32 ............................ AAATGAGAAAGTCACTAAGTTTTACTGATAAT 3326902 28 100.0 32 ............................ TCTGGCTGATGCGTAACATGGGGAGGGTGATC 3326842 28 100.0 32 ............................ GTTATCAGGATTGGTATATAGCTCAAACACCC 3326782 28 100.0 32 ............................ TGATGCGGGGTATGTAGGGGAACGGGACAGTT 3326722 28 100.0 32 ............................ ATTGCGCAGGGCATCGTACAGACCGTATACCT 3326662 28 100.0 32 ............................ AGCATGCAACATTCGTTGATACACAACGTGGC 3326602 28 100.0 32 ............................ GGCTGCTGAATACTACCCCTGAGTTCGACAAC 3326542 28 100.0 32 ............................ GCCCCGGTATCCGTCCGAAATTGCCAGGTAAA 3326482 28 100.0 32 ............................ GTTGGCTGTCGTATGAGGCCCAGGGCTATTAC 3326422 28 100.0 32 ............................ TATTTCCAGGCAACTGCCAGTACCCGGGCGAA 3326362 28 100.0 32 ............................ TATCAAATCGCCAGTCCCCTGCAGGAGAAATT 3326302 28 100.0 32 ............................ TACAGCAGCGGCAGAAACTCTGCCGCCTGATT 3326242 28 100.0 32 ............................ ATTACGCCACCTCCCTGTAACTATGCCTGCGA 3326182 28 100.0 32 ............................ ATCAGCCATCGTTCGCCCCCTCTGAACAGGGA 3326122 28 100.0 32 ............................ AGCAACAGTTTCACAAGAACCTCGCCAATTTT 3326062 28 100.0 32 ............................ TCAAGGAAGCGGTTAAGCCCGCCGAGGCTGAA 3326002 28 100.0 32 ............................ TTCAGTACGCCGGCAGCTTTTGCCTGCTCGTT 3325942 28 100.0 32 ............................ ATCGCCGACAGCCTGGCTGATGAGCGGTTAGG 3325882 28 100.0 32 ............................ CCGCTCGATGACGTAGCTCATGGTGCCGTAGC 3325822 28 100.0 32 ............................ TACCGTTGAGTTCAGCGCCGGATAACCGTCAA 3325762 28 100.0 32 ............................ TACCGTTGAGTTCAGCGCCGGATAACCGTCAA 3325702 28 100.0 32 ............................ AATATGGACGAGGTCGAGTTCCAGCATCTGTA 3325642 28 100.0 32 ............................ GATGCCTTTCCCTTGAGCATTTACGGATATGC 3325582 28 78.6 0 ....T................CCCA..C | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGTGCGGAGATCGCCGCCGTACCTGCGGGCGCCCGGTGGCGTACCGTCAGCCGCGCGCAGGTGAAAAGCAGTCCTCAGCGCCTGATGCGCCGCTCGGTGCGCAAGGGCTGGATTTCGCAGGCGGAGGCCGATCGGCGGCAGGCAGTTACGCCGGCCCGAACGCTGAATCTCCCTTATCTGAATCTGAAAAGTCTCTCCAGCCAGCAGCACTTTCGCCTGTTTATCGCCCACGGCGAGCTGCGCCCGACACCCACGGCAGGAGCGTTTAGCAGCTACGGGCTAAGCGCAACGGCCACCGTTCCCTGGTTTTGACCTTACGGACCGCGGTTTTCGCCGCGGCCTTTTCTTTATTACGTTGCGGTTATGAAAACCCTTTTTTTGAGCAATGATCTAACGTATTGATTTTATTTAACTGAAAACGTGAGGTAAAAAAGAGGGTAAAACATGGTTTTTGGGCGTTAATGGTTTTGTAACAGTGGGATAGAGCAGTTTTACTCTT # Right flank : TCCGGACATAAAAAAGCCGGGAATTGACCCGGCTTAGCTTTTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAATCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGAGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3337402-3336230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACVCI010000001.1 Pluralibacter gergoviae isolate ECO77-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3337401 28 100.0 32 ............................ GTTACGCGGCCGGGACGTCCAATATTGGAACG 3337341 28 100.0 32 ............................ TGAACACAAATACCTAAAACCGACACCGCGCA 3337281 28 100.0 32 ............................ GGCTGGTTAGCAGTGATGTAGTCCAGGATGCG 3337221 28 100.0 32 ............................ GCATATCAGGCGCGAAGGTTGGCGGATGCGAA 3337161 28 100.0 32 ............................ AATCCATCGCACGCACTGGCAATGAATATTTT 3337101 28 100.0 33 ............................ AGCGTTCGCTGACCGCCAGCGGCCGCAGAGGAT 3337040 28 100.0 32 ............................ TGGCGCTGCGGCTATCGGCCTGCTGATGCATG 3336980 28 100.0 32 ............................ TAAATGGCATTGGTCATCCGAAAAAAGAGTCA 3336920 28 100.0 33 ............................ GTCGGTTTCGGGACCTTCAAAGTGAACCACCGC 3336859 28 100.0 32 ............................ CATGGTTTCCCGTCAAAACTGCACACGTCAGA 3336799 28 100.0 32 ............................ GCCCCAAAGAGAGGTGATGACATGCTTTACTC 3336739 28 100.0 32 ............................ ACCATCTCGCAGGCACTGTAGTAATCCGTAAG 3336679 28 100.0 32 ............................ GCCACATAAAAATCACCGAAATGATAATCAAA 3336619 28 100.0 32 ............................ AAGCCGCTTGACTCTCCACGCTTCTGACTTCA 3336559 28 100.0 32 ............................ AGCACGGTGAAAGGCTTCAATGACGATTAGAA 3336499 28 100.0 32 ............................ TCAAGCCAATAAGCCTACTCTTTTCTTAACTT 3336439 28 100.0 32 ............................ GATCAATTCGGCGGGCCGCCTGTTGTGGTTGT 3336379 28 100.0 32 ............................ AGGAGTGGCTCGACAGAATCGGCAGCAAAATT 3336319 28 100.0 33 ............................ TGCAGTCAGGAAAATGCGGACTGATAGCAACAA 3336258 28 89.3 0 .......................CTC.. | A [3336232] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCAGGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTTGGCAAACTGGTGGACGGCGGCCAGGTGACGGTCGATCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAAAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTGACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTTTGTGGCCCGATCCGGCGGCGGTGAAAACGAATATAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGAATGCGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACGTATTGATTTTCAATATGCATTTCAGGTGGTTATAAAAAAGGGTCTGCGGCACCAGAATCTGTTTTTTCTGTTTTATAACAGTGTGATAGAGTGTTCGATGGTCA # Right flank : CATAACCCATTGACCACGTTCCTTAATGAGTGCTACCACTAGACCAAATTCGGGAAGCATTACATCACGCCGCGAGGGAATCATGCAGATCCTGCCATCAGATTTAAAAACCATCCTCCACTCCAAACGCGCCAATATCTACTATCTCGAAAAATGCCGCGTGCAGGTCAACGGCGGGCGGGTGGAGTATGTTACCAGCGAAGGCAGCGAGTCCTGCTACTGGAATATCCCTATCGCCAATACCACGGCGGTTATGCTTGGCATGGGCACCTCGGTGACGCAGGCGGCGATGCGCGAGTTTGCCCGGGCCGGGGTAATGGTCGGTTTTTGCGGCACGGACGGTACGCCGCTGTATGCGGCCAACGAAATGGATATAGATATCTCATGGCTTTGTCCGCAGAGCGAGTACCGGCCGACAGAGTATCTGCAGCAGTGGGTCTCTTTCTGGTTTGATGAAGAGAAGCGGCTGCAGGCGGCAAAGCGATTTCAGCAGGTCAGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //