Array 1 15603-20251 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOX01000074.1 Vibrio cholerae strain 2631-78 NODE_20_length_80399_cov_198.739_ID_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15603 28 100.0 32 ............................ ATTAATGCCAACGGTGACGGTTTTGGTTGTGA 15663 28 100.0 32 ............................ GATAAATTCAGTGGCTGACTTACCGTATTCGC 15723 28 100.0 32 ............................ TACAGCGATGAAGCCAATGATGTGCTGATGGC 15783 28 100.0 32 ............................ TTATAGAGCCCAAGTTTGACCAAGCGGCGACA 15843 28 100.0 32 ............................ TGAAAAAATGGTGCTACGGTAAAGGCTCATTG 15903 28 100.0 32 ............................ ATAAGAGCGAAGTGTTGTTTGACTTTTCCGCA 15963 28 100.0 32 ............................ CAAGCCGCGCAAGCCTGACTGAGTGCCTGTAT 16023 28 100.0 32 ............................ TTCACCATGATCATGCGAGAGTCAATAGAAAC 16083 28 100.0 32 ............................ GATGGTGTAGCTTCGCTTTGGTTAGATGTTGG 16143 28 100.0 32 ............................ AAATGGCTCTGAAGCTGTTCCTGGTTGTGTCC 16203 28 100.0 32 ............................ TCATTTATATTTTGCAATGCGGCCTCTTGCAT 16263 28 100.0 32 ............................ ACTAATCTCAATATCAACCTAAAGGAAATGAT 16323 28 100.0 32 ............................ ACAGCGAAATATTTAATCGATAGGCTAATTTA 16383 28 100.0 32 ............................ ACAACATATCCGTGTCATAGGCGGCTTTTTGC 16443 28 100.0 32 ............................ ACATAGACGAAGGGGATCGCTGGAAGAAAGTT 16503 28 100.0 32 ............................ AAAGTTCACAGTAAGCGTAACCCCAGCAACCC 16563 28 100.0 32 ............................ CGCCAGAGCCAAGCGAAGAAGAGAAAAACGAT 16623 28 100.0 32 ............................ AATTGCCGAACCTACACGGCGCGGAATGTTGT 16683 28 100.0 32 ............................ GTTCGCTGAATGCGGACATGGGTTACATCACG 16743 28 100.0 32 ............................ GGAAGTCATGCTTGGAATGGTGGTGTTAACCG 16803 28 100.0 32 ............................ TGAAAAGGTAGTGCTACGGTAAAGGCTCATTG 16863 28 100.0 32 ............................ TCAAACATTTGAGAAGTGCCGCAGTATTTAGG 16923 28 100.0 32 ............................ TCTCAATGTGATGTTGATGTTTTAAAAACCCC 16983 28 100.0 32 ............................ GTGATGTTGATATGAGAGCTACTTACTCACTT 17043 28 100.0 32 ............................ TTTCAGTTCTTCGGCTTCACTTGGTTTTATTC 17103 28 100.0 32 ............................ TTTTGAACTAAGTTGACGGTATTCCCATTCTG 17163 28 100.0 32 ............................ ACTACTGTCCCAGTAGCACTGGTTGCATGGCG 17223 28 100.0 32 ............................ TTAAGCGGACATTGCAAAGCGGCTCCGCTGGC 17283 28 100.0 32 ............................ ACTCGTAATCGAAATTTTCAAAGACAACGTTA 17343 28 100.0 32 ............................ ATGTAATCAAATCCTGTATGCTCAGAGTTATG 17403 28 100.0 32 ............................ TGACACTTGGCTTCCCGAAGCGGCTCCTGCTC 17463 28 100.0 32 ............................ TTTACAATGACTATACAGCGCCCAATGGAATG 17523 28 100.0 32 ............................ AATTGCATCTAGCTACGGCTTTTCAGGATTTC 17583 28 100.0 32 ............................ TTGAGGTGATGAAGTCTAGAAAGTCAGCGACT 17643 28 100.0 32 ............................ TGATAAATCAACACGTTCACCATCAATGTATG 17703 28 100.0 32 ............................ TGAATAGTGACAGCAACATAACCGCCGTCACA 17763 28 100.0 32 ............................ TTTCTGCCAGATTGGATAGCAGGGATAATATG 17823 28 100.0 32 ............................ TTACACCGTACATACGCGAATTAATTTTAGAA 17883 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 17943 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 18003 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 18063 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 18123 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 18183 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 18243 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 18303 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 18363 28 100.0 32 ............................ TCTTTTTGAGAATTTTTCTTATTTAACTCTTC 18423 28 100.0 32 ............................ TTGAATCGAATGTTCATTTATTGCACAAATCG 18483 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 18543 28 100.0 32 ............................ TTATCCAAGCATACGGTAGACTGCCTGAGTAA 18603 28 100.0 32 ............................ TAAAAACGCGGTCGCCATGGAATCCCCAAGCA 18663 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 18723 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 18783 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 18843 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 18903 28 100.0 32 ............................ AATCACCCGGATGGAATCGGCAATCGCGTCCA 18963 28 100.0 32 ............................ ATAAACATCCATACCCATTGATTTCGTGACAC 19023 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 19083 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 19143 28 96.4 32 ...........T................ GTATTGCAACGGGAAAGGCGCGCCTTTGTCCT 19203 28 96.4 32 ...........T................ TGTATTGACGAAAGTCGATTTAATCAACAAAA 19263 28 96.4 32 ...........T................ AGAGCGAGGACGACCAACAATTGCATAAATCA 19323 28 96.4 32 ...........T................ TTGCTTGTCTGCCTAGCGTGGTTGCTAGGCAC 19383 28 96.4 33 ...........T................ GCTGCGCGGTGTGACCTGTCGCACATTTCGTAA 19444 28 96.4 32 ...........T................ TGTTACGAGGAGCAGCCGTAATGGACAGCAAT 19504 28 96.4 32 ...........T................ ATACGATGCGGTAGGGCGTGCCATGATAACCG 19564 28 92.9 32 C..........T................ TTGGTTCAGCACAGAAACTGGACGTTTGCAAA 19624 28 96.4 32 ...........T................ TGTCTATGAAGTGACAAAGCGAATGATTGTGC 19684 28 96.4 32 ...........T................ TGCCTCGTGGGTGAGCGTTTCCTGCACTAACC 19744 28 96.4 32 ...........T................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 19804 28 96.4 32 ...........T................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 19864 28 96.4 32 ...........T................ CGCTGGGCCAAAAAAGACCAGGATATCTTTTT 19924 28 96.4 32 ...........T................ GAATGCGCACTGGAAGTGGACGGTCAAGTGGT 19984 28 96.4 32 ...........T................ TCCGCCTGAATGTAATGCTGATGAAGTACTCA 20044 28 96.4 32 ...........T................ GCTCTCGATATCGGGCACACCCTACACGCGCA 20104 28 96.4 32 ...........T................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 20164 28 96.4 32 ...........T................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 20224 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 78 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //