Array 1 106838-106136 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFE01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2198 NODE_1_length_278639_cov_4.75278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106837 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 106775 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 106714 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 106653 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 106592 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 106531 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 106470 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 106409 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 106348 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 106287 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 106226 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 106165 29 96.6 0 ............T................ | A [106138] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124467-123097 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFE01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2198 NODE_1_length_278639_cov_4.75278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124466 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 124405 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 124344 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 124283 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 124222 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 124161 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 124100 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 124039 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 123978 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 123917 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 123856 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 123795 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 123734 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 123673 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 123612 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 123551 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 123490 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 123429 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 123368 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 123307 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 123246 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 123185 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 123124 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //