Array 1 176920-175562 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQM01000004.1 Lacticaseibacillus rhamnosus strain LR2 LR2_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 176919 36 100.0 30 .................................... TGACAGGCAGTGTTGTTGATTGGTTTAAAA 176853 36 100.0 30 .................................... GATATATTTGGAATGACACCTGTACAAGCT 176787 36 100.0 30 .................................... TGATGACTGTTTGGAGTTTCAGCAACGGAT 176721 36 100.0 30 .................................... TGTGTCGATGAGTTGGCTGCAGGCGATTGC 176655 36 100.0 30 .................................... GTTTCAATTGATTTGGATATAAATTTGTTT 176589 36 100.0 30 .................................... AACTGTTGATACTCTTGAATATAAAGGGGT 176523 36 100.0 30 .................................... CTGATTCGCAAAATCCCGGGCGTGGGCTGA 176457 36 100.0 30 .................................... TGGCTGGCAAATTGTTGGAGATGCTTTTGC 176391 36 100.0 30 .................................... GGGTTATGGGGCGTTAAGCCCATTGATTTA 176325 36 100.0 30 .................................... CAAAAATGTCAATGTGTCGATGACCTGGCT 176259 36 100.0 30 .................................... TTTGGCTACAAGCATGACCCAACGGCAGGG 176193 36 97.2 30 ........C........................... GTGTCCAACTTAATATCTGACCACTTAATA 176127 36 100.0 30 .................................... ATGCTGGTGATGACACCGACAACCAGAAGG 176061 36 100.0 30 .................................... GTCGTTTAAGTTGTTTCGTCGCTCTGAGTT 175995 36 100.0 30 .................................... ACGATGAAGAAACAGAAGAACTTGACGGCG 175929 36 100.0 30 .................................... CGATTATTGCGCCAATCACCACTGGGTTCA 175863 36 100.0 30 .................................... GACTTGGCGGATCTCGTTGTGCTTATTGCG 175797 36 100.0 30 .................................... TGATGGTTTTGCCGTCCGGCTTGACAATCC 175731 36 100.0 30 .................................... ATTTCGGCGATGGCCGTCTATCTAAAGATA 175665 36 100.0 30 .................................... CTTAGAATAGCTTTATTGATTTGGTTATTT 175599 36 83.3 0 ....T..................AA.C....G...A | T,C [175565,175571] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.1 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGATGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAGAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTAAACAAGCTGTTAGATCAGGTTAAGGACACATCGTTAGAATTACTTCTCATTGAATTTTCAGATGTCGAACGTGGAAAGTTTTTTGAGAAATGCCAGTATATCTATATTGACAAAGATTTCATGGATAACCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCATTGTCAAAAGCAAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //