Array 1 286470-282834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYPD010000005.1 Bacillus sp. FJAT-50079 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 286469 32 100.0 35 ................................ AATCTCGAATTGATCAGCAACGACCACTTGTTGCC 286402 32 100.0 33 ................................ TTATGGTTGTTATTTAACAGAGATAGCTTAAAC 286337 32 100.0 34 ................................ CTCAACTGTGAATCCTGGATAAACGATTTACGAT 286271 32 100.0 35 ................................ AAAAGTCCAATAAAGCTGACCATTCTCATTAATCG 286204 32 100.0 35 ................................ TCCTCAATTTGAAACATCCCTTTAAGAATTGATTG 286137 32 100.0 35 ................................ TGCGTGGGTATTACTACCCCACGCAATACCTGTCC 286070 32 100.0 34 ................................ ATGTGGATTCAATCAAAGAAGAAGGTGAACGTAA 286004 32 100.0 34 ................................ AAATAAATATTCGAGTTTACCTGGACGAAAAATT 285938 32 100.0 34 ................................ TGTTTTAGTCCTTTCAAGACGATTGTTAGTAGGT 285872 32 100.0 36 ................................ CTAAAAGCAATTGAAAACAATATTGGCGGTGCGGCT 285804 32 100.0 34 ................................ GTAGTAATTAAGGTATCATATTTGTTTTGTTTGA 285738 32 100.0 35 ................................ AAAAGTCGTGTATTTTGATAAATGGTTAAAATGAT 285671 32 100.0 34 ................................ CTTCATGCTACCCCTCCTGCTTATCCATCTTGTC 285605 32 100.0 34 ................................ ATCGCAAAGCTTCTTTAAGAAATCCCTATCCTCT 285539 32 100.0 35 ................................ CATGTTATCCCTCATTGATTTTGGTCAACAGCTCC 285472 32 100.0 38 ................................ GGTAAGAGTTTCAGCACGAGCATTGATCATCTTATAGC 285402 32 100.0 35 ................................ GTATCAAACGTAAGGAGAAACGAAAAACGAAGTAC 285335 32 100.0 35 ................................ AAGGCTATTCGACAGATTGGCGCTCCTACCGTGGA 285268 32 100.0 33 ................................ TTCGGAGACCTAGTAAGACTTAGAAGCAAACAA 285203 32 100.0 35 ................................ TAATGACTTTATTGTTTGTAACAGTTCGAGTAAAT 285136 32 100.0 35 ................................ CTATGGCTTCGCGCGCAACCTGAATAGGTGGTTTT 285069 32 100.0 35 ................................ GCATAACAGTCTTAACACAAAGGCTATTCAAGAAC 285002 32 100.0 38 ................................ TTTTGTATGTCATCCTTTTGAGATTTCAGAGCTGTTTT 284932 32 100.0 34 ................................ TTTCCGTCGCACCAATCAGAAAGAAGGCGGGCGC 284866 32 100.0 36 ................................ TAAATATGCAACAGGCGAAAACATTCCGGCATCTGT 284798 32 100.0 34 ................................ TATATAGAGTGCTTCGATCCATCCCAATTCCTTC 284732 32 100.0 35 ................................ CATTTTGGGTGAGTCCCGTTAATTTTTGCTAACCA 284665 32 100.0 35 ................................ CATGTTATCCTTCATTGATCTTGATCAACAGCTCC 284598 32 100.0 34 ................................ ATTTCAGGTACGCGTAAGGGGAAAGGATGAGGCA 284532 32 100.0 33 ................................ TTCTGGATTGGTTACTGGGTCAGGTGGTAATTC 284467 32 100.0 35 ................................ TATCAAAACTACTAATAATAAATTAGATGGATTAG 284400 32 100.0 36 ................................ AATCCTCTTTGACAGCTATCAATAATTTTTAATAAC 284332 32 100.0 35 ................................ TTTCTGGCTTGATCTTCTGTTTTAAATTGCATTGA 284265 32 100.0 34 ................................ AAGGAAATAGCAATGGAAGATAGCAGCATTTTAG 284199 32 100.0 36 ................................ ACTTTTCCCTAATATGTTATAATTTTGATCCTTATC 284131 32 100.0 34 ................................ CCCCTTTTATAGCCTTTGCTCTTCGCAAAACATC 284065 32 100.0 34 ................................ TTCCTTGCTGTACTTGCTTTTGAAGCCCTTTTTA 283999 32 100.0 34 ................................ ATTTGGACGATCAATACCGGAAACCCTGCATCAG 283933 32 96.9 34 ......................A......... AGTTTCTAGGGCTTTCAACACATCTGGCACTTCG 283867 32 100.0 36 ................................ CGGAAAAAATGGTTCGTAAATAATGCCTGTCTTACT 283799 32 100.0 37 ................................ TTCGATGTGTCTACTGATTATTTATTGGGTCGCACAG 283730 32 100.0 35 ................................ CGAAAATGGCTTACCATGTTTTCTAACATGATTAA 283663 32 100.0 35 ................................ ACGGTAACTACAAAGTAGCGGAAAAAGCTTGGGAT 283596 32 100.0 33 ................................ GTTGGGGCTTGATCCCGAGTTGGGCAAAAGATG 283531 32 100.0 34 ................................ TTTAATCGCTAGGTGGTCTTATGAAAACATTGGC 283465 32 100.0 35 ................................ TTCTCAATGCCTCAATTGTATACATTAAAAGATGG 283398 32 100.0 35 ................................ AAATGAATCAACAAGTGCATCGGTCGATTCCATTT 283331 32 100.0 34 ................................ GAGTATTCGAGCATCCATAAATAAATAAGGCTCA 283265 32 100.0 34 ................................ ACCCAGACCCATACAACATCAAACACGTTCAACC 283199 32 100.0 34 ................................ GCACAAGGAAAAACATCATAAGTTTAGAGTTGTA 283133 32 100.0 36 ................................ ATCGACAGAGGGGGTTTACTCATAATGTCCCATGGC 283065 32 100.0 34 ................................ TTCTTTCAAATCATGAACAGACGCTTCCAAATGT 282999 32 100.0 36 ................................ GTAAAGGCGTTTCAAGAGGACGCAATCGGAGCCATT 282931 32 100.0 34 ................................ ATCAATAAAAATCCAAAACTCCCCGTCAAACTCG 282865 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 55 32 99.9 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGAAGCATACCCACCATTTTTATGGAAGTAGGTGATCAATCATTTTAGTCTTGATTACGTACGATGTAAGCACAACATCAATTGGCGGTAAGAGAAGGTTGAGGAAAGTGGCGAAGAAATGCGAAGATTTTGGTATACGTGTACAAAACTCTGTTTTCGAATGTGTTCTTGATGCCACTCAACTTAAAAAGTTAGAAATTGAATTAGAACAATTAATTGATCCAAAAGTTGATAGTTTAAGATTTTATAAACTAGGAAATAACTATAAATTTAAAGTCAAACATTTAGGAGCAAAACAAACAATAGATGTAGAAGAACCATTAATTTTTTAGTGCGGACCCGAAGCTCACATAAAATCCCTAGGAGATCCGCACCACGAAAAGTTGTAAAATAGCCTGTTTTTGGATAATATCAGAATGTGAATGAAGGTAAAAATGTATTAAATGGATCATTATTACTAAAAAATTAGTGAAATAGTCCTTATTTAATACAATTTCGCA # Right flank : AGTTTTTGGGGTTGCATCCCTTTGTGTGGTTGCATGTCGCACTCCTCATGAGCAAGACTAATATTTTTTGTGTTACAAAGCAACAGTTGAAAATAGGTTACGTCACTCTTTCAATTTTCGTATGGGAAAAATAAACTATTATGATACAATGCAAATATATGATTTAATAATAGTAGTGATTGTGGCTGTGGAAGGAAAGTTCACACTCTTTCATCGGAAGATCCATAATCGATAAATATGGATGTAAATGCAAATCTAGAACATAGCAAATGATTAAGAGGATGAGCATGGTTACATCCATTTCTAACAATAGTGAAAAGCATGCCGAGAAATAAGTGACACTTTACTTTCTCAAGCATGCTTTGTATTTTATATAATGAGTAGGAAAGGAGAAAAAATACGATGAGTTCGTGTAAACTAGATCATTCATTAGCTGATGTCTTGAAGAAGTTGGAAGATCAAAGAGCCTTTCTACCAACTGGGCTGTATGAGGCAATTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 175170-176335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYPD010000002.1 Bacillus sp. FJAT-50079 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 175170 32 100.0 35 ................................ CGAGGACTATTTGAAGGATTTATTGAGGAAAGAAT 175237 32 100.0 34 ................................ CTCTTGGATTCTCGCTTGCAGCTTGTACAATTCA 175303 32 100.0 34 ................................ GTCAATTTCCTCAATTTTGATACTTTGCAATTCG 175369 32 100.0 34 ................................ AAGGGTGTTGATATTTTACTTTATAGCAAGTCTG 175435 32 100.0 36 ................................ TGTTCGGGTCCAACTGTTAACTGTCACTTCCTTTCC 175503 32 100.0 33 ................................ CGTCCTGGTCCAAGTATCGACAGTGACCTCTTT 175568 32 100.0 34 ................................ TACCATCGCCCCATTCTGTTAAACGTGTTACACA 175634 32 100.0 35 ................................ GAATAATCCTCTAAATTCGCCGAATGTATCTTGAA 175701 32 100.0 34 ................................ ACTTGATGAATGAGATTCTTTTCTAAGTTCTTTT 175767 32 100.0 35 ................................ TATTCTACCCCCCAACGACTCAACAGCTAATTCTA 175834 32 100.0 36 ................................ ATTTTATACACCTACAATTTAAAAATAGGCATGATC 175902 32 100.0 33 ................................ ATCCGTGCAAGCTGTTAAAACGGCAGTTAATAC 175967 32 100.0 34 ................................ ATGCTACCACCTCGAACATTCGTTTGTATTTATT 176033 32 100.0 34 ................................ ATCGTCAGCATCGAAGTAACGCTGCAAAACACCG 176099 32 100.0 35 ................................ ATTGATCTTTGGCAATCAATCAAAGAATCCGGTCT 176166 32 100.0 35 ................................ GCTGGATCCGTTGACTTGGCAAGCAATGCATGGGA 176233 32 100.0 35 ................................ TTCAATCCAGCGAGTGTTGCGTCTGATCCATTCAA 176300 32 87.5 0 ......................CTT...C... | CTTT [176321] ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.3 35 GTTGCACTCTATATGAGTGCATGGATTGAAAT # Left flank : CAAACTTTAAAATGTGTTAAGGTCGATGGGGAATGGTAGCTATTCATGCTATATGAATAAGTATAATATCTATGAAACAACGATCATACTTTTTAAAAACTTTACAATTCAAAGAATATGGCGAGGGAGGCATAGAGAGTAACTAAAGTACAATTAATGGTAAAACACTGTAATTTAACAGGCAAACATACTATAATGATTAAAACTACCAATTAAGCTATTTAATGAAAGTAAAGCGTTGTAGGGCTCTTGTCGATCAGTTGTGGATTAGCATGTAGCAAATAGAAACAAATCTATTATTCATAGTGAAGAGGTTATTAGTGATACAACACCGCTTTTAGGTGCGGATCAGAAGCACACATGAAATCTCTGGGAGATCCGCACCCTAAAAGTGGATAGATTTCTAAATATATCTTGCTTTTCAGCTTAGCAAATGACATTTAATGGATTTAAACAATGCTAACTAAGAAGTTAATAACCTAAAATACCCTATTTTCGCA # Right flank : TTTAATTACAGCGATATATTAATCGATTGAACTAGTAAGAAAATTGCTTTAAAATGACGTTAACACGGATAAACGAGGTGACTTATGAAAGGTCAATGGAACTTAATATTAGCACTACTGATTGCCTTAATCATTGCCATTTTTTCAGTTATCAATGTTGAACCTGTAACAGTTAATTATTTATTTGGTAAAGCCGAATGGCCATTGATCCTCGTTATTATTGGATCAGTTCTATTAGGAGCAATTTTAGTAGGTTTAATTAGTATGATGAGAATTTATCAATTACACCGAACATTGAAAAAGGAGAAAGGGGAAACAGATCACCCTTTAGAATGATGGAAGTCGTCGAAAATATTATATTTTCGACTTAAAGCAATCATTAAACTTTTTAATCATTATTATTCTTCCAAGCTATTTATAGAGCCTGTTTTGATTCATCTTTTTTTCAAAACAAGCTCTTTTGCTTTTTTCTTTAGTTATTAAAGTATCATGCTAGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCTATATGAGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //