Array 1 6294546-6295245 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050219.1 Escherichia coli strain RM-096-WU chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6294546 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 6294607 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 6294668 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 6294729 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 6294790 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 6294851 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 6294912 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 6294973 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 6295034 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 6295095 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 6295156 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 6295217 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6320900-6322514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050219.1 Escherichia coli strain RM-096-WU chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6320900 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 6320961 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 6321022 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 6321083 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 6321144 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 6321205 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 6321266 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 6321327 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 6321388 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 6321449 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 6321510 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 6321571 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 6321632 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 6321693 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 6321754 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 6321815 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 6321876 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 6321937 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 6321998 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 6322059 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 6322120 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 6322181 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 6322242 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 6322303 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 6322364 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 6322425 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 6322486 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGCTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //