Array 1 1555694-1552167 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFI01000001.1 Streptococcus equi subsp. zooepidemicus strain NCTC4676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 1555693 26 100.0 39 .......................... AAAAATCTGTTAATGATTACCGAGCATACTCTTGTCTCG 1555628 26 100.0 41 .......................... CGTCTATTGTGGTTGGTGATATTAGCAACAAATTGGTCTCG 1555561 26 100.0 39 .......................... AACAACGTAAAGATTTTGACCCAGAAACAATGAGTCTCG 1555496 26 100.0 39 .......................... AAAAGGCATTTAGCAAAGAACTTAGAGGTTCTTGTCTCG 1555431 26 100.0 41 .......................... TTTTTCTGCATTGTCAAACATACTATCAACAAAACGTCTCG 1555364 26 100.0 40 .......................... ACAATTACAATCTTTGAAGATACTTTAGAAGCCTGTCTCG 1555298 26 100.0 40 .......................... AAAATAGCAAAGAATATACTGCACCACAATTCATGTCTCG 1555232 26 100.0 40 .......................... AAGGTCATATTACGGCAGGGCAATATCATACCCTGTCTCG 1555166 26 100.0 40 .......................... ACAATCGTATTACCCTGACCGTCGATATTAACAAGTCTCG 1555100 26 100.0 40 .......................... TTTAGAATATGGAGAGGGAGAAAACCCTATCTCCGTCTCG 1555034 26 100.0 40 .......................... TTTTTGATACGTTTATTCATTTCGTCCCTCCTGTGTCTCG 1554968 26 100.0 40 .......................... AGCTCCCCAATTGCAGCTATTAAACATTGCCCAAGTCTCG 1554902 26 100.0 41 .......................... GTTTTTTTGGGTCAGCATAAGACCCTCGAGATGTCGTCTCG 1554835 26 100.0 39 .......................... AAATTGCTGTTGATTATTAGTAATAACCTTTTGGTCTCG 1554770 26 100.0 41 .......................... TTCTTCGCGCACCTTGTCAGCAAGCAGCTTATCGTGTCTCG 1554703 26 100.0 41 .......................... CTTAAATTCTTGAGTTTTTGAGTAATCAAACGATTGTCTCG 1554636 26 100.0 40 .......................... CTGCAATCAAATCATCGAGATCAACCACCCTATTGTCTCG 1554570 26 100.0 41 .......................... TTTTAATAATGGAGGCACTTGTAGAAATAGAAAAAGTCTCG 1554503 26 100.0 40 .......................... TGACCCATCGCTATTAGAGCCTATAACCGTCATTGTCTCG 1554437 26 100.0 42 .......................... ATCACTAAACGTAAGCTGTACGCCTTCAGAGACACGGTCTCG 1554369 26 100.0 40 .......................... CGTTGTGATGTTATCACGATGATACTCACGCAACGTCTCG 1554303 26 100.0 39 .......................... CTCGATTTTTAGCCTTAAGTGACCTGACTCATCGTCTCG 1554238 26 100.0 40 .......................... AGAAAACGTGGAGATGTTTGGGAATACAGGATAAGTCTCG 1554172 26 100.0 39 .......................... TGTAATGTTCCCACGTCCTTTGTCTTGTTGTAGGTCTCG 1554107 26 100.0 41 .......................... AAAATTGATCGGTCACAAAGATGTGTTAGAGACACGTCTCG 1554040 26 100.0 39 .......................... ATATCAGCTTTCACAAGATGATATGAAAGTAAAGTCTCG 1553975 26 100.0 40 .......................... TGGCGTTAACTCGGGGATCTCTGTTAAAGCCATTGTCTCG 1553909 26 100.0 40 .......................... AACAAGCCAGTCTCGTGCAATTTGGCAGTTTGCCGTCTCG 1553843 26 100.0 41 .......................... TTTGTTGCTGTATTGGTTTGTTCCGTATAGATTGTGTCTCG 1553776 26 100.0 40 .......................... ATCTTAGCTTTGGTAGGTGTCAGCACTAGCTTGAGTCTCG 1553710 26 100.0 39 .......................... AGAGTTACTGATTAAATCATAGCGCCATGAGATGTCTCG 1553645 26 100.0 40 .......................... ATTTTTACATTTTCCTTTTTTATTTAAGTATGTTGTCTCG 1553579 26 100.0 40 .......................... CTGTTCTTCGCTGTCCCCGTTGTTCCGAATAACTGTCTCG 1553513 26 100.0 40 .......................... AGCTCGCTTAGGGTTAATGCCAGACTCTACTCCAGTCTCG 1553447 26 100.0 43 .......................... CCCAGTCGTTGTGTTGCTTGCTAATGCTACGTCTCTGGTCTCG 1553378 26 100.0 40 .......................... ATAGTAATCTTTAAAGTCGGAGTGTTGGCTATCTGTCTCG 1553312 26 100.0 41 .......................... TGATGATGCTTCTTTTAACAAACGGAATAATAGGAGTCTCG 1553245 26 100.0 40 .......................... AATGTTAAAAACCTCTTCCTAGAATGATTGTTTAGTCTCG 1553179 26 100.0 40 .......................... AGAGAGACGAGATAAATCAGAATTGTGTTTTAAAGTCTCG 1553113 26 100.0 40 .......................... AAAACTAGCTTGGTCCCAATCATTGTTTTTGACCGTCTCG 1553047 26 100.0 40 .......................... TAAACTTGATGTTTCTAAACTGACTGATAAAGACGTCTCG 1552981 26 100.0 39 .......................... CGCTTTTGCCTGCTCATTACGCTGGCGAATAGCGTCTCG 1552916 26 100.0 41 .......................... TGGTTCATTTACCGGTGCTGTTTGAGTAACAGGTGGTCTCG 1552849 26 100.0 39 .......................... ATTCCATAAATTAGCAACAGGGTACCAACCAATGTCTCG 1552784 26 100.0 41 .......................... GTCAATGGCGATAGGATCGTTATTTCCAAATGCTTGTCTCG 1552717 26 100.0 39 .......................... TTTGGCAGCTGTCATCCCTTTATACTGATCAAAGTCTCG 1552652 26 100.0 39 .......................... CATTAAAACAACCGCATCTGCAAGGATTGCTTCGTCTCG 1552587 26 100.0 40 .......................... GGTAGTCACTGGCGTTGAACCATCAAACAAAGCAGTCTCG 1552521 26 100.0 39 .......................... GAAGTTGAAATTGTCGAAAGGTACTTGAATCTCGTCTCG 1552456 26 76.9 41 ..TTTC.T.......C.......... GATTGCTTTTGGAGTAAAACCGATCGGCTTAGCTTGTCTCG 1552389 26 80.8 41 ..TTTC.T.................. GTTTGAATCAGAAACACGTGATACAAAGCTTGGACGTCTCG 1552322 26 76.9 40 ..TTTC.T.......C.......... CTGAAATTGCCCCTGCTGAAAACATGAAATTAAGGTCTCG 1552256 26 80.8 37 ..TTTC.T.................. GCGATACGTGCCTTTACGATGTTGCGACTCCGTCTCG T [1552232] 1552192 26 61.5 0 ...TT.GT...T.C....T.C.T.T. | ========== ====== ====== ====== ========================== =========================================== ================== 54 26 97.7 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACACTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAATAAAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : CTTTGTTTTTCATGAAGGGGTAAATCATATTGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGTTGATAGGACTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGGCATTTTGTTAGATTCTGATGATTCTAGGTCTATTACTATTTTTGGCAAGAAACTATATTGGTA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //