Array 1 3320-1708 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKKU020000013.1 Campylobacter fetus strain D4381 NODE_6_length_47951_cov_86.6815_ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3319 30 100.0 34 .............................. TCATTTTTGTCATCAGGACCAGGAGAACTGACAC 3255 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 3189 30 100.0 36 .............................. TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA 3123 30 100.0 36 .............................. TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA 3057 30 100.0 36 .............................. AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT 2991 30 100.0 36 .............................. GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT 2925 30 100.0 36 .............................. TGGGGATTCGATGAAATTTTTAACTATATAGCATTC 2859 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 2793 30 100.0 36 .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 2727 30 100.0 36 .............................. TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA 2661 30 100.0 36 .............................. ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC 2595 30 100.0 36 .............................. CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA 2529 30 100.0 36 .............................. TTTGAAGTGCACGACGCTATAACTAGAACACGGATC 2463 30 100.0 37 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG 2396 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 2330 30 100.0 36 .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 2264 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 2198 30 100.0 36 .............................. TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC 2132 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 2067 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 2001 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 1935 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 1869 30 100.0 36 .............................. CGTTTTATTTCCTTGGAAAGCAAGGTATAAGCGTAG 1803 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 1737 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.9 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : AAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGTGACCACATTATAAGTCAGGCTCAAAACATAGCTAGAGTAAATCAGTCTAGTAAATACGGAGTAAAGCATTACAAAGTATTAGCTAGGATAGATAGCCGTACAAGCGATATCTGTAGAAGTATGAACGGACGCATAATCCCAGCCTCGCATATAGAAGCTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTGGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACTGGGGTTGAGAGAGTAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 619255-617904 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKKU020000012.1 Campylobacter fetus strain D4381 NODE_1_length_635092_cov_86.0928_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 619254 30 100.0 36 .............................. TCGTTAATATTATTTTTGTTGCAATGTTTGCATTTT 619188 30 100.0 36 .............................. TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG 619122 30 100.0 36 .............................. AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG 619056 30 100.0 36 .............................. TTGCGCGGAGATAAACACTCTTAGCACGGAATTTGA 618990 30 100.0 37 .............................. CCTTTATAATCTATACTAAAACCATTTAATATAATAT 618923 30 100.0 36 .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 618857 30 100.0 36 .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 618791 30 100.0 37 .............................. GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT 618724 30 100.0 36 .............................. GATAATCAAAATTTTACAAAGCAAGTTCTTGTACAC 618658 30 100.0 36 .............................. CCATTTAGCATATCATATACTTGATCTGCCATTTAT 618592 30 100.0 36 .............................. ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA 618526 30 100.0 36 .............................. TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC 618460 30 100.0 36 .............................. TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA 618394 30 100.0 35 .............................. TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC 618329 30 100.0 36 .............................. TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT 618263 30 100.0 35 .............................. TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG 618198 30 100.0 36 .............................. TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT 618132 30 100.0 36 .............................. TTAAATCTCCTTATCGCTTATTATATTTATTAATTT 618066 30 100.0 37 .............................. TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA 617999 30 100.0 36 .............................. ATGGAATATTTTTGTTAAACGCATTCATACAAAATT 617933 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : GGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGCCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTAAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATTCCGTATGGAACTATAGCAAGCTGGAAGAGATCTGATGGTTACACAAAAGATATATATCTTTTCTTTAAAAATTTAGACCCGGAATTCTTAATAGAGAATTTTGGAGCCAAAACTCCTATAATTCCTTTACGGGATAAAGAAGTAGTAGGCGCAATAGGTATTTCGCAAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //