Array 1 829-81 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYY01000139.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 contig139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 828 28 100.0 32 ............................ TGAATATAATTTAACTCTTAGCTTACCTTTTT 768 28 100.0 32 ............................ CATTTTATCACAATGATTAATAAAACATAAGA 708 28 100.0 32 ............................ CTCGAATCTCAGCCAAGAGAATACGGTCAGGT 648 28 100.0 32 ............................ TTTCGTTGTTTTCTAATTTACAAAATACGATT 588 28 100.0 32 ............................ TGTATATTGTAAATATAATTTACAGTTTGCTT 528 28 100.0 32 ............................ ATCAGATCCATTGCTTCCATTTGAACCGTCGC 468 28 100.0 32 ............................ ACCTGCAAAGCAAAGAACAGCTTGGCAACCAA 408 28 100.0 32 ............................ CCCTACACATTTCTATCATCTCATTACTAGGA 348 28 100.0 32 ............................ AATCTGGCAATTGTTGGCTGAAGTCGATTTCT 288 28 100.0 32 ............................ TCCCATAGATGAAACCTGTAAGGGTGGAGATT 228 28 100.0 32 ............................ TTCAAAATGGTGTGTTGGTCGCGGTGCTGGCA 168 28 100.0 32 ............................ AAAAAATCAGAAATAAAAAGAAAATCTAGAAC 108 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTATCCATCGTGTAGATGGTTTAGAAG # Left flank : AGTACTAAAGTAGAAACTAAAGATAAAAAGCATTTCAAAATTTCTGGTAATTTGACTGTGAAAGGTGTAACAAAACCAGTGGTATTGGATGCGACATTGAATAAACAAGGTGCGCACCCAATGACTAAAGCACAGTCAATTGGTTTTAATGCTACAACTTCATTTAGTCGTTCAGCATTTGGTATCGCAAACTATGTTCCGAATGTAGGTGATAAAATCACTGTAAATATCACAACTGAAGCTTCTGTTAAGCAATAAGTTTTTATAAATCATAGCCTGCATCAAGTTTAATAGCTTGATCGCAGGCTTTTTTATTTTTATCTCCATACAAAATATTGATTGCATATGGATGTGAAATCTTCATGTGAAGCTTTAAAAATGATTATTTAAATTTATTCTAATAAAATCAGTTAACTGTAGAATGTGATAAAAATGAAAGTAATCTGATTAAAGTTGTGTTATCTTGATGATATTAGTCACATTATTGTACGGTTTATCGA # Right flank : GTTTAACAAATAGTGGAACAAGTGCGGGGGTAATCCCCCCTAAAAATAATAGGATCTAAAAGTAGAATTTTCTCTTAAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCATCGTGTAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTGATCCACCGTGTAGGTGGTTTAGAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1002-494 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYY01000167.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 contig167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1001 28 100.0 32 ............................ AAGATCACGAGAAAGTTTTACATTTGAATCGA 941 28 100.0 32 ............................ AGTTTTTTGATCAATAACTTTCAAATGTAAAA 881 28 100.0 32 ............................ ACCATCTTTTGTATGATTAATAATGCTTTAAA 821 28 100.0 32 ............................ CAAGGCATACCACCACCACCAGCACCAGCAGC 761 28 100.0 32 ............................ GTTGGCTTTCAAATCACTGTATTTTTGTGCTG 701 28 100.0 32 ............................ TTTTGAGGATATTTTAGAAGAAGATGGTAGCT 641 28 100.0 32 ............................ TATAACGGCTTTGGCGATCTACTCGATATAGA 581 28 100.0 32 ............................ GTTGGTGCTCAAATCATAGGTGATGCGGAAAG 521 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTATCCATCGTGTAGATGGTTTAGAAG # Left flank : TAATGGCTGCTTAACCTCTACTTTTAACTTCAGTTAGTTATGGGAGGATTACCCGGGTACA # Right flank : GAGTCCAAGCGATGCTAATCAAAAGAAATATCTGCGAGAACGTAAAAAGTGAATAGTACGATAGTTTTTATAAGATTTTCCCCTAAATTTGCCAGTAAAGAATAAACTTAGATATAATGGAATAATAATGTGAATAATGAAATAAATCAGCTCATTTATAACAATTGATCATTAAGCTAATCAAATAGGACATAAAATGAAATTTTTTAAAAGTATTGCTATGGTTTCTATCTTAGTGCTTCCTCTATTAAATGCTTGTACATATTTAAAACCTAATAATGTAGTGGAAGTTCCCAATTTGACGCCTAAAGTCTTATTAGCAGCAACCCCGTGGTTAACGACAGAGGCAAAAGACCAAAATGCTCAAGCTGTTGCACTGGATGATGCACGTGCTAAAAACTATGTAGGTTATGCTTATTTTAAAAAAGACGGTTCATTTAAAATCGCAGATTCAAATCCCAAGTGCAACACACTTGTAGTTAGTTGAAAAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCATCGTGTAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTGATCCACCGTGTAGGTGGTTTAGAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9037-10264 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYY01000004.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9037 28 100.0 32 ............................ ATGTTCGGCATGGAATCATAAAGGCAATGTTT 9097 28 100.0 32 ............................ TATAGTTGAAACAGCTCAATCATACAAAGATA 9157 28 100.0 32 ............................ TTGAGTTGTTTCCAAAATACAGGAAGCCACTC 9217 28 100.0 32 ............................ TTACAACCAACTAGGTGAAACTGGCTCAATCA 9277 28 100.0 32 ............................ AACCACAACATATAGTGTTTAAGCCATTCCAT 9337 28 100.0 32 ............................ TCACTAAATGATCCTGCTTCGACATAACTAAT 9397 28 100.0 32 ............................ ATCACCTGTAAGTAACCAATCTACATTTGCAT 9457 28 100.0 32 ............................ AGAAAAGAAGCCGATGGGTATGTGGTTCATTC 9517 28 100.0 32 ............................ AATTTCGGTTGAAAATTATGAAAAAATAAACC 9577 28 100.0 32 ............................ TCAATGGCGTTTAAGAGTTGGTGATTATGCAT 9637 28 100.0 32 ............................ CTGCAAGACAGCTATATAGAACAGTTGGAAAA 9697 28 100.0 32 ............................ CTATTGATTTTGAATATTATGCATGGTTAAAA 9757 28 100.0 32 ............................ AAACGGCAGAAATTGAAGTGGATTATGAGGAA 9817 28 100.0 32 ............................ TTATAGTCATCATGTTCGTGATAATATTGTTG 9877 28 100.0 32 ............................ ACAAACATTGATTGCTGGCAACACGCTTGCTT 9937 28 100.0 32 ............................ CATTATCATAGGTGGTCTAGTACATGCCTTAA 9997 28 100.0 32 ............................ TTTTGATCAAATGCTTAATTTCATCAAGCCTT 10057 28 96.4 32 ..................A......... GTGTAGTGTTGTTCCTAAATTTACTGAAACAT 10117 28 100.0 32 ............................ ACATGTTTCCCTCAGAGGTTCATGTGGTTTTT 10177 28 100.0 32 ............................ TCCTAAACGCAGGCATGCTCCTTGCCCTGCAT 10237 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.7 32 GTTTGACATCGTGTAGATGGTTTAGAAG # Left flank : GCTTTAGATGCAGGTTGTATCGATGCTGCTTTAAAGCTATGTAAAGGTGTTTTTTTGGCAAAAACGGAAAGTCCTTTTTTATGCGCTTGGCGTGATTTTATTGAATCTCGTTTGAGTGAGGCGATTTTTAAATCCAATGAAACAGATATTTTATTTAAACATTTGGCACGTTTCCCTGATGCGATTGACGCAGTGGAGCGTTTGATTGAATTGACACCTTTGCACCATCCTGCACATCAGATGTTGATTAAGTATAAAGATGAGCATTGAGATTTAAATATGAATGTAGTTAAAAATCTGTAGAAAAATAATTATTTAGATTTTTATTCAACATTATCGTTAATGGGATCATTTTGATTGGTCTTTGTTATTCTTCGATTTTTATTTATATAAAATATTAATTTAATTCAATGGTTTATATTTCTGTCTAAGAATGAAGTTTTTCAATGTATTTTGTGCTATCTTTTTGATATTGGAACATTTGTATAACGTATGTTCTA # Right flank : AAGCAGATGAAAAAATTCATCAACATATAGCCAACTCATCAAATCCAGATAAATGAACTAAATAATTCTATATAGTGGGTGTGGGCACTTTAAAATCGAGCTATTGATACACCTAGAACTTTATATTGACCAAACCAAAGCATTCGACAGCCTTGTTTTATACCTAAGTTTTCTAATTTTTTAGTGTATTTGATTGTTTTTAAAACGCTTGTTATGTTTTTTTCTTTTTTGGCTTAAAATCTAAACAAATGCAATCGAAGGGGGATTGCATAAGATATGGTTTGCGACTAGAATTCCTCTCGTACCATTGATAGAGAATATTTAAATAGGTTAAAGCCTTAAATACTCTGCCAAAAATATAAAATATCACGAAAGTGGTTTTTTATCGGGGGCGTGGCGAAATTGGTAGACGCACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCGCCCCCACCATATTTTAAAAGCAAGGTTTGAAGCCTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACATCGTGTAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTTGTCATCGTGTAGATGATTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22982-22593 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYY01000052.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 contig52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22981 28 100.0 32 ............................ ATTGGGGTGAGAATGTTATTCAGCTTAAAACG 22921 28 100.0 32 ............................ TGCACAGATTTTAAATAGTTTACGGTTATCAA 22861 28 100.0 32 ............................ AGTACCACCCGAACTCTGATAGCAATTGGATA 22801 28 100.0 32 ............................ ACTACCTGCTGAATAGTGATACATAGTGTTTT 22741 28 100.0 32 ............................ CGAAAAAGGCATATCAATCCACATCGATCCAC 22681 28 100.0 32 ............................ TTAAAGGATGTTATCTAATTGGCTTAAATAGG 22621 28 96.4 0 ...........................A | A [22596] ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACCATCGTATAGATGGTTTAGAAG # Left flank : TGCGCTAGGCAGTCATATTTTTGATGCGGATATTCGAGAGCTTAGTGAAGATGTTCGCTCACTGGTCGAACATGATGCCTTCCTGTTCCAAAAAGTACGATTCTTACTTGATACAACATCTGGGTTCATTAACACTGAACAGAACGATACGATTCGTCGATTCTCGATTTTACCAAGTATGCTTGCACCTCCAATGCTGATCGCCAGTATTTACGGGATGAACACTGAAATCCTGCCTTTTGCACATGGGCATTGGAGCTTTTATGTGGTTATTTCAATTTTAATCGCGACCTTTTTTGGACCACTCATATACTTCCGTTGGAAAAAATGGATTTAATTTCCACCCTATTTTCACAAAGCCAAGCGATCTCGCTTGGTTTTTTGTTTTTATAAAATAGAATGTAAAATCAAATACTTATAAGACACTTAAAATATGATCTTTTTCTCTTTTTAACACACTATCTTATTGATAATAGACGTGTTAATTTGTAATAGTTCTC # Right flank : TTAATCAGGACAATAAAATGGAAATACACAAAATCATTGATAATATTCGTCTTGATCTCAACCAGCTTGGCGATGAAACAGTACGTCAATCTTCTCAACGTTTTTTTAAATCTGATCAAATGACCTATTTCTACGGCGTAAAAAGTCCAGATGTTAAAACCCTCATTAAAAAATATAAAAAACAGGTTTTAGCTTTATCTAAAAAAGAAATCTTTGAGTTATGTGAAGAACTGCTAAAAACAAATTATCTAGAAGAAGCGAGTATCGCCTGTGCTTTTACAGCATCCATTAGCAAACAATTTATACCGACTGATTTTAAAATTTTAGAAAAATGGATCAATCTATATATTACAAATTGGGCGGCTTGTGACACGCTTTGTAATCACACCGTTGGTGATTTCATCATGATGTACCCTGAATTTATCCCTGAACTGAAAAAGTGGACAAACTCCCCAAATCGTTGGATGAAACGTGCAGCTGCGGTCACTCTGATCATTCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTATAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55467-57235 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYY01000098.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 contig98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55467 28 100.0 32 ............................ ATGTTCGGCATGGAATCATAAAGGCAATGTTT 55527 28 100.0 32 ............................ TATGACCGCACTATTGCATTATCTGCTGAAAA 55587 28 100.0 32 ............................ TCTTTGGTCTGTTTAACCATTGGATCAGCAAG 55647 28 100.0 32 ............................ GATCCCTTCAGATGCTCCTAGTCGGTCGGAAC 55707 28 100.0 32 ............................ CTTGTGTTTAGGGGCGGTTGGCTGTCAGACGT 55767 28 100.0 32 ............................ AAATACTGTACGGTTATAAAGAGATTCATCAC 55827 28 100.0 32 ............................ TAACTTTACACCCTGCCCCACTTGAGGTCTAA 55887 28 100.0 32 ............................ ACGATTCAGGGTGCGCCTTAGTGATTGCATGT 55947 28 100.0 32 ............................ TGAGTTGTCAACTTCTGAACGCTTACTTTCAG 56007 28 100.0 33 ............................ AAACAACATGCAACAAGCAAGCTAGTTTTTTTC 56068 28 100.0 32 ............................ TGTCATTTTATTGGATTTGTGACACAACTAAT 56128 28 100.0 32 ............................ TAGAATTTTCAATTGTGGTTAATTTATTTGCA 56188 28 100.0 32 ............................ CACCACTGGTTCCTGGTGGAAAGTTCCGAGTT 56248 28 100.0 32 ............................ GAAACTGATTTAATGTAAATGTTTTTGATCTA 56308 28 100.0 32 ............................ AGGTGCGGCAACTGATTTTAACCGGATAGAAC 56368 28 100.0 32 ............................ CACAAAGACAGCTTCGGACAATTATGGCAAAT 56428 28 100.0 32 ............................ GGTGTACTTAATCACTGTGGATGCAAGCTTCT 56488 28 92.9 32 ....A......A................ AAATCGACACCAGTTTTTGTATTGGTTTTTGA 56548 28 92.9 32 ....A......A................ ATCTGATAACTTTTTAACTTTATCAGGGGCTT 56608 28 92.9 32 ....A......A................ CATCTGCTGCTCAATTCTCTCGATCGGAAACT 56668 28 92.9 32 ....A......A................ AATACACGGCAATCTGTGAGCCTGTTTTTTGC 56728 28 96.4 32 ....A....................... GCTTTGTGTTGATCACCAGAAGCGTGGATACA 56788 28 96.4 32 ....A....................... ACGATCCGAATGTCGAATCGTGGTATCACGTA 56848 28 96.4 32 ....A....................... TTTAAAAGGTTTAAACTTGCCACTTAACCGAC 56908 28 96.4 32 ....A....................... TTTGCAAAAAGTTACTGAAATTGAAGATAGAT 56968 28 96.4 32 ....A....................... ATTACGACATAATCATAAACGCCGTCAGCTTT 57028 28 96.4 32 ....A....................... TCGAGCCAATCCAGTCCAGTGATCGTATCTGT 57088 28 96.4 32 ....A....................... ATAAGCAACCTGTAGGCGGTGTCTACCGCCAC 57148 28 96.4 32 ....A....................... TCCATTTTCACAAAAACACCTGCAGCAGTACC 57208 28 85.7 0 ....A.......C...........T..A | ========== ====== ====== ====== ============================ ================================= ================== 30 28 97.6 32 GTTCCCCATCGCTTAGATGGTTTAGAAG # Left flank : GGTCGTTGGGCAAAATCTTTATATCGGCAACTTGCCCAAGGCTTTGGTTTTGAGTTTAATCGTGAAGAAGGTAAATCTTCACATGATTCGATGGCTGATACTGCCAATAATTATCTCGATCATGGCAATTATATTGCTTATGGTTATGCGGCTGTGACATTGAATGGCATGGGAATCAGTTTTGCCTTACCCATTTTGCATGGTAAAACCAGACGTGGTGGTTTGGTATTTGATATTGCAGATTTAGTCAAAGATGCTTTTGTGATGCCTCAAGCATTTGCATCAGCAAAGTTCGCTCATAACCAAAAAGAGTTTAGGATGCAGCTTATTGAAACGTGTCAAGATCAGGATGTTTTAGATTATATGTTTGGCTTCATTTCTGAGCTTTGTAATAAAATTAAATAATTCAATGTATTACAAACAGCATCTTTTTTGATGTATTTTTATTCTTTAATAGCTTATCTATTTATTATCTAGGGTATTTTTATTAAAATACTCTA # Right flank : AAACATAAAGCATATATCCGATCACTAAATGCATTTCGGATATACGCTTTATTTTTAGACTAAATATTGACTTTTGATCTTGGGATTTTATTCATCATTTAAAGAACATTCAAAATTACTCGGATTTTGAGAGCAACGAACTTTCTTTAAAATACGCATCATTTCAGGATTGTAATACCCCTCTTTGGTCATTTGAATACGAGCTTCTCGCATGATTTTGATATATCCCGGCTTATCCGCTTCACGAATATCCATCCAATATTTGGCAGGTATATCACGCTCAAGTTTATCTACAAATTGAAATGCAGGTGTCAATTGTTTTGAAATAATCTCTCTGGCAATCGAGCCCATTCCTGCAGGGAATTTGCCACGATGCATGATCAAAACACCTGTCAATTGCACGATTGGAAATTTGATAATCCCACCAACCACTTTTTTATTTTTATCTTCCATTCCCTTATGTAGTTCTAAAGGATCAAAAAGCAAGGCAGGTCCTGCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCATCGCTTAGATGGTTTAGAAG # Alternate repeat : GTTCACCATCGCTTAGATGGTTTAGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //