Array 1 8897-7344 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWP01000072.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5067 NODE_72_length_14228_cov_76.922652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8896 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 8835 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 8774 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 8713 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 8652 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 8591 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 8530 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 8469 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 8408 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 8347 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 8286 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 8225 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 8164 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 8103 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 8042 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 7981 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 7920 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 7859 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 7798 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 7737 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 7676 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 7615 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 7554 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 7493 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7432 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7371 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8726-9243 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWP01000004.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5067 NODE_4_length_159621_cov_76.030697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8726 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 8787 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 8848 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 8909 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 8970 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 9031 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 9092 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 9153 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 9214 29 93.1 0 ............TC............... | A [9241] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //