Array 1 343743-343514 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYK01000001.1 Nakamurella sp. YIM 132087 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 343742 31 93.5 37 ..................T....A....... GTCGCACACCGCACAGTGGGAGCCGGCCCCACCGCTC 343674 31 100.0 34 ............................... TCGGCCCACCACCGCGGGAGCCGGCGGATCACCG 343609 31 100.0 35 ............................... TTGGCCCACCACGACGGGAGCCGGACCTACCGCTC 343543 30 90.3 0 ...........T.......-.......A... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 96.0 36 CGATCCGGCAGGCCTGCCCCGACTCCTGAGG # Left flank : CGACCTGGCACCTGTTCTGCTCGGCGGGATGGACGTGCTCCCCTACGGTGCGCTCGAACTGATCCACGCCGACCCGGTGGACCCGATGCCGGGACACGAGGCCTCCTCGGTCCTGCGCGAGTTGACCGCCGACGACGTCGAGACCGTGCTCCGGTCCGCCGGGCCGGAGGCCGACTGCCCGCAGGTGCTCGTCGAGATCCGGCACCTGGGTGGCGCTCTCGCCCGGACACCGGCCCACCCGGACGCCTTCTCGCACCGGGACGCCCGGTACCTGGTGTCGTTGATCGGGCTGGGGGTGCCACCACTGATGCAGGCGGTCGCCGATCACGCCGACGGACTGATCGCCGCTCTGGCGCCCCGATCGTGCGGTCGGCTGCCGAACTTCGCGCCCTCGACGGCACCGGCCGAGGTGCGCCGCACCTACTCCCCCGAGACGCTGCGCCGGCTGGCCACACTTGCCGCGACCTACGACCCGGCCGGGGTGCTGGCCGATGCGGCTC # Right flank : TCTGCAATCCCGGGCGGGCACCGGCCGCCGCGGGTCGGCAGGCCTTCCCTGAATCCAGGGACCCGACCGTCAGGCCGGCACCTGTCCGGACCTGGCGGGACCTGGCGGGACCTGGCGGGACCTGGCGGGACCTGGAGGGATACGGTGCGACCGGGACATCCGGCACCGGCTTCCAGCGCAGACCCGCGGTCCGCCGGACACCACCGAACACCGCACGTCGAGCACACCGGAGGGGATCGTGCAGTACCGCGTACTCGGGCCACTGGAGGTGGTCCGCGACGACCATGCCGTGGACCTGGGCGGGCCGAAGCAGCGGGCCGTGCTCGCCGTGCTGCTGCTGTCCGCCGGGCGGGTCGTGCCGACGGACTCGATCATCGACGCGGTGTGGGGCGAGGATGCGCCACCGAGCGTGACAGGCAGTCTGCAGGCGCACATCTCGAACCTGCGACGACTGCTGCGGGACAGCAGCACCGCGACCTCCCCGATCGTCCGACGGGCAC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATCCGGCAGGCCTGCCCCGACTCCTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 469114-468887 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYK01000008.1 Nakamurella sp. YIM 132087 Scaffold5_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= ============================================== ================== 469113 45 100.0 46 ............................................. CATCGAGACGGCGCCGACCGAACCGCCCAGACCCCAAGGCCAGCCG 469022 45 95.6 46 .........................G........G.......... CGGAGAGACGGCGCCTCGCAGACCCCCACTCCCTCCCTGCCTGTCC 468931 45 95.6 0 .........................G................C.. | ========== ====== ====== ====== ============================================= ============================================== ================== 3 45 97.1 46 CTCCCGGTCCGTTCACCGACAACCACTGTCGGCAAACGGCCCGAA # Left flank : ATGGGCGAACAAGGGGTGGAGATGTTCGATCGTGCGCTGCTGCGCGGTCTTCCCCTCGACCTGGTGGCGGCCGCCCACGACGAGTGGGGTCGCCGCCGTGGCAGCCCGGCCGCCACACGTCTGCTCGCGACAGCCGCGGACGGCGCCCATGCGGAGTCGGAGCGGATCTGTCACCGGCTCCTCCGAGCCGCAGGTATCACCGGGTGGCAGATCAACCCGGAGGTGCGATTGGCGAACGCCACCTACCTGCCTGACCTGGCATTCCTCCGCCAACGCGTGGCAATCGAGATCGACGGATGGGCCTTCCATTCGGATCCTGAGCGCTTCGAGAAGGACAGGTGGCGACAGAACGCCTTCATGGTGGCCGGCTGGACGGTCCTTCGGTACACCTGGTACCAACTGACTCGCAGCCCCGAGCAGGTCGTCGCCGAGATCAGTACAGCGGTACTGCGTTCTTCGGTCAGGTGATCCTGAGCGACATCTCTCCGACTGCCGCCGCC # Right flank : GTAGAAGGACGGCGCCTCGCAGACCCCACTCCTCCCGGTTGGTCCCCCGCCGCAGCAGAAGTCAGGCGGAGGGGTCGAGGAGGGCGATGGCGGCGGGGAGGTCGAGGGACTTGCCGTCGGCGTAGAGACGGTCGAAGACGTCGGAGGCAAGGACGGCGAGGAGTCGGGTCCGGACATCGACAACAGCTGGGTCACCGGCATTGTCACTCCCCCGGATCCGGGCGGAAGCCCCGAGCGCCCGCGCGGAACGGGAGGCGTCACCGAGGGCAAGGAAGTAGCCGGCGATGGCGACACCCACGGCGGCGATGACCGGCTGGTCGTGGGTCGGCACGCCCTCCCGATAGGCGAGACGCAGGTCGGCCGACGCGGTGTCGAGGTCGCCGGCCGCGGCGGAGATGGTGGCGGCGGTGGCGCCGAGGATCGCCGCCATATGGCCGTACATCGGGTGGTCACGACCCTGTCCGGCGATGGCGGCGCGCAGCCGGGTCATCAGCGCGACC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCGGTCCGTTCACCGACAACCACTGTCGGCAAACGGCCCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-20.80,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //