Array 1 135431-130241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKV010000012.1 Acinetobacter baumannii strain AB77 NODE_12_length_147335_cov_11.274408_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 135430 28 100.0 32 ............................ TCTGTCATGCTGCAAACCCTCCGTTATGTTTA 135370 28 100.0 32 ............................ CTAACGCTTCGCCCCAAATCTTTGCACCATTC 135310 28 100.0 32 ............................ AGTAACATCACCAGTTGTTGGGTTTTGGTTGC 135250 28 100.0 32 ............................ TGTTGCAGGTGGGCTAGACAGTTTGATAATAA 135190 28 100.0 32 ............................ AATTTCCCCAGATCAAGGTCTTTTAGCTTCTC 135130 28 100.0 32 ............................ AACCATTTCGTATTGCGGGATACATAGAATCA 135070 28 100.0 32 ............................ ATAGAGAATCTATTAATCGCTTTGAAGAGTTT 135010 28 100.0 32 ............................ ACCCATCAAATGAATTACGTTTTTTTGTTTAA 134950 28 100.0 32 ............................ GCGATCCTCAGGTGTTTCAAAACCACATTCAC 134890 28 100.0 32 ............................ GTGAGTCTGAGAAAGGCAAGCGCCCTAAAGCA 134830 28 100.0 32 ............................ TCAGCTATCACAAAAGTCGAGCAAGTATTGGC 134770 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 134710 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 134650 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 134590 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 134530 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 134470 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 134410 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 134350 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 134290 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 134230 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 134170 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 134110 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 134050 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 133990 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 133930 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 133870 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 133810 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 133748 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 133688 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 133628 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 133568 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 133508 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 133448 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 133388 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 133328 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 133268 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 133208 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 133148 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 133088 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 133028 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 132968 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 132908 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 132848 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 132788 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 132728 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 132668 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 132608 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 132548 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 132488 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 132428 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 132368 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 132308 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 132248 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 132188 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 132128 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 132068 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 132008 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 131948 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 131888 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 131828 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 131768 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 131708 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 131648 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 131588 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 131528 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 131468 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 131408 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 131348 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 131288 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 131228 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 131168 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 131108 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 131048 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 130988 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 130928 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 130868 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 130808 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 130748 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 130688 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 130628 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 130568 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 130508 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 130448 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 130388 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 130328 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 130268 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 87 28 94.7 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACAAAAATCCTAAATAATTGATTTTATAATTGCTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCAAGTCCGACTATAGGAGTTGAACTCATTTTGAAAAATTCTAGGCTCTTCCCACTTTTATTTTAGCTTACTATAAAGGTCAATATAAAAATTATGATAGAAACGCGTTCTCTTTCTCTTAATTTTAGGGCTTACAACTGAGCTGTATGTAACCGAAGTTTCCTCTATTTCTTCCTCAATTAATCCTACAACTTCTAAATCTTTGAAGTCACTAACTAAAAGATTTTCAAATTCCCAATATTTGTTGTAATCAGTGGCATCTTTTGGCAATCCTTCACAAGGTATGGATTGTCCGCGGAGCCT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 140521-143003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXKV010000012.1 Acinetobacter baumannii strain AB77 NODE_12_length_147335_cov_11.274408_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 140521 28 100.0 32 ............................ GGACTCATTGTGCTGGAACCATTCTCGATACT 140581 28 100.0 32 ............................ ACTTCGTCACGGATCTTTTGTGCTAATAATTT 140641 28 100.0 32 ............................ AGTGTCTTCACAATCGCACTGTGCCTTGCTTT 140701 28 100.0 32 ............................ ACAAACCATTTATGATAGTAATGATCCTAAAA 140761 28 100.0 32 ............................ TGAAGCTAAGCAATTTAAGAAATGGGTTACTT 140821 28 100.0 32 ............................ TTTTGCAGTAGCTGCTCCTACAACTCAAGCAA 140881 28 100.0 32 ............................ TTGTCGCGGGTCGCCCATGTTTTCAATGGCCT 140941 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 141001 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 141061 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 141121 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 141181 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 141241 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 141301 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 141361 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 141421 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 141481 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 141541 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 141601 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 141661 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 141721 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 141781 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 141841 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 141901 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 141961 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 142021 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 142081 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 142141 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 142201 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 142261 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 142321 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 142381 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 142441 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 142501 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 142561 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 142621 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 142681 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 142741 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 142801 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 142856 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 142916 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 142977 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 42 28 98.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //