Array 1 551904-552093 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053287.1 Thermus thermophilus strain HB27c chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 551904 36 100.0 40 .................................... CTCTTTCAGGATCCACGCAAACTCCCTTCCTTGGGGCTTA 551980 36 100.0 42 .................................... GCCTCCACCATGGGGAGGAGGCCCTCCTCCCTCGCCACATAC 552058 36 88.9 0 ................................TCGT | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 96.3 42 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGACCCGGGCCCGCAGGAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGAGCTGACAGAGCTCCAGGCCCAGCGCCTGAAGGCCGCCCTCTTGGGGCGGGGGCGCTACACCCCTTTTTATCTCTGGCGGTAAAACGAGCCTTTGCTACACTTGTCAGCAAAATTACGATGCGACTGGCTTTCTTTGAGCTTTGAAAAACAAAGCTCAGTCCGGTAGCCCTTTCTTCGCCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATGCTCCCCCTAACCCGGACTTCCGGGTGGGGACCTTGAAAGCCAGTTTCTCCCTTGTGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCTGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCGGGACGGGGTTCTTTGGGGGGTACC # Right flank : TAGGTGAAGGCCTGTACCTCTCGCGCTAGGAGGCTTCCACGCAGGTCCCGGTGCGCCTTCCCACCCACCTTCCGGGCCCTTTCCCGAAGGGGCGCTCCCAGAAAAGGGGCCCGGGTGGTTCGGTGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCCCTGGTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTTGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGGAAGTCCCGCAGGACCACCTTCAGGGCCT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1153882-1153400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053287.1 Thermus thermophilus strain HB27c chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1153881 36 100.0 35 .................................... CAAGGATGACGGTGCGAGTCAACCCGTCCACTTCC 1153810 36 100.0 35 .................................... GCCGATGAAGGCGGCCAGTACGCGGCTGTCGCTTA 1153739 36 100.0 47 .................................... TGGACTGCCTCTACGAGCTCCCTGAGTTTCAGCGCTTCCAGCCACTT 1153656 36 100.0 37 .................................... AACCTCTCCCTGTCCTGCAGGACGCGGAAGAGGTTCA 1153583 36 100.0 39 .................................... ACGCGAACACGACCATAGGGAGTGTCCTCAAACCCCACA 1153508 36 100.0 37 .................................... CCCAAGAAGCTCCACCAGCTCCGCCACGTCCTCCTCG 1153435 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =============================================== ================== 7 36 99.2 38 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGCGCTTGTTGGAGGGGGTGAGCCATCCTCTGGGGTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCCCAGCGGCTGAAGGCGGCCCTTCTGGGGCGGGGGGAGTACACTCCCTTTTACCTATGGCGGTAGGGGCAACTCTTGCTATACTTACCCGCAACATTGCGATGCAACTGGCTTTCTTTGCGCTTTTTAAAACAAAGCTCACTTTGGGAGGCGTTTCTTCGCCGATATTTTAACCTGGTGCAACGTTGCGGTGTGTGCTATACTCTTGCCAACCCGGACCTCCGGGTGGGGATCTTGAAAGCCGTTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCTGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCGGGACGGGGTTCTTAGGGGGGTACC # Right flank : TGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTGCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATTTCCGGGTCATGGCGCACTGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGGGGTCCTTTCTTGGAGAGCCGACTCCTCTCCACGCGCTTTCCCGACTCCTCCCGCTCGGGGGTCAGCCCCGCGTAGGAGGCCGCCCTCTTTGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCCGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGGCCTCCGCCTCCGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCAAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACTTCACCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 127286-128686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 127286 36 100.0 38 .................................... TTTGGGTGCGAGGGGGTGGACCGCTAGTTGCGCCTCTA 127360 36 100.0 40 .................................... CGGACTCACAAGGACGGTGCGGAGCTGGCGGTCCTCCCCA 127436 36 100.0 36 .................................... CGGGAGCCGCCGCCTCGAAGAGGGTCTCCCACCACT 127508 36 100.0 43 .................................... CCCCCCACACCGCGCCCCACTTCACAAAACATAGCGCTATAGT 127587 36 100.0 43 .................................... CTGTCCTTGGCTTCCCTGAGGAGCCTTTCAGCCTCAAAAAGCC 127666 36 100.0 34 .................................... ATGAAGATGCGGATGATTGCAAAGAGCCAGATAG 127736 36 100.0 39 .................................... GGCACCGTGGCTTGTGCCTTGCGCATGGGCAAGCGGGGT 127811 36 100.0 41 .................................... CCCACCCAGCCGGGGCACCGTAGCTTCTGCCTCGCGCATGG 127888 36 100.0 42 .................................... GCGCCCATGAGCACCTCTTTCGCCGCGGTCCTAGTCATCCTA 127966 36 100.0 39 .................................... GACACCTGGGAGAGGCGGAGGGAGTGGATTAACTTCGGG 128041 36 100.0 42 .................................... CCCCGTATAGTTCCCGCCAGATGTTGGCGAGTTCCTCCGCTG 128119 36 100.0 40 .................................... CGCTGGACCTTCCTCGCCACCTGCCTCAAAACGTCCCAGG 128195 36 100.0 42 .................................... CCTAGGGGAAGAAGGACTCGAGGTGCTCCTTCACGACCTTGG 128273 36 100.0 38 .................................... TCAGCCCCCCTAGCCTCCTCGAGGGCCTTCTGCCCCTC 128347 36 100.0 42 .................................... CCTCTCGCACAAGGGGACGGATAATCTCCCCGTTGAGCGAGA 128425 36 100.0 41 .................................... CAGTATGCGTAGGCCTCGGCTATCCTCTCGTACAGCGCCCA 128502 36 100.0 36 .................................... CCAGGGAAATCATGAGAACCGACACGGTTGGACAGG 128574 36 100.0 41 .................................... CCCTAGGGTGCGGGCTAGGGGCTAGGCTAAGCCTAGCCCTA 128651 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 19 36 100.0 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CTCATCCAGCTCTTTGAGGAGCGCTTGTTGGAGGAGGTGAGCCACCCTTTGGGCTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCTCAGCGGCTGAAGGCGGCTCTTCTGGGGCGGGGGGAGTACACGCCCTTTTACCTTCGGGGCTAGGGGGTACTTGACACGACGGAACAGGCATTTTTCTCGCTATCGCAAAGGGAAGTAAAGTAGCGAAGGTTCTTTTTGAGGCACATTTGGACGGGGTACACCGTTTCAGCGAGATGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCAGCTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCTTGTGGCTTTCTATCGGTGTAAACCCTCAAAAACCCCCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CCGGTGTTTGCGGCTAAGTGCCCTCCCCCAAGATTTTCAACTCCACACCCCCCAGGGCTTTCAGGGCCTGCGCCACCGCCTCCTTAAGCTCCTCCACGCTCCCGTAGTGCCGCCTCGGCATCAAAAACCCCTTCACCCGCCGCCAGACGCTCTCCATGGGGTTCAGATGCGGGCTGTACCGCGGCAGGTAAGCCACCATAAGCCCCCGTTCCCGCCACGCCTCCTTCCTCCCCTCCACCTCCCGGGACCGGTGGAAGGGCGCGTTGTCCATGAACACCTTCAGGGGCTTGGCCAAACCTTCGGCCACCCGGTCCAGATACCCCCGCACCACCTCCCACCGCACCGGCCCCTCCAAAAGGGCAAAGAAAAGCCGCTCCCCCTCCCGTCCCCGCACCAAGTGCCCCACCACGTTCACCCGCCCCCGGGAACCCCAGGCCCGGGGCACCCCCTTGGCCTCCCCCCTCCGACCCCAGGCGTAGGTAGGGGGAAGGGTCAGGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 129786-130052 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 129786 36 100.0 38 .................................... CGCGATGACGATGCAGGGCGCCGAGTGAAACGTTAAAG 129860 36 100.0 41 .................................... ATCACCTTCTTAGGTGTCGGGTTCCTTTTTGCCGTTCTAAC 129937 36 100.0 44 .................................... ACCAAGATGTAGTCATCCCCAAAGTCCTTGACGAGCTTAGTCAT 130017 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 99.3 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGGCTTTCCCAGAGGCACGTACCGCGTCCGTCGCCACACGTACCCCATGGCCCTCAGGTGCCGGGCCACCACCTTGGGGGCCAGGCGGACCCCGAAGCGCTCGGCTAGGGCTGCCGCAAGCTGCGGGGCGGTCCAGACCCTATCCTCGGCCAGCCTTTCCTCCACGAAGGCGGCCATCTCGGGGGTGAACTTCCTGGGGGCTCCCGGGGGTTTGCGGTAGGCGAGGCCCTGGAGACCCTCCCTCACGAAGCGCCTGAGGACGAGGTAGACCGTGGTGCGGTCCTTGTGGAAGTGCTGGGCAATCTTTGGGGCGGTCCAGCCCTCGGCCGCCAGGCGGACCATCATGGCCCACAGGCGGGTCTTCTTGTGGGTCCTTGGGTCCAGGGAGAGCTCCAGGAGGAGCCGGTCCTCCTCAGGGGTCAGCTGGATCCGAAGTGGGGCCGCCATGTTGAGATGATAAGGGGTTGGCACTTAGCTTCCTGGCCTGCGGCTTCACTGCT # Right flank : CTCGCGGGGGCCTTTGGCTAGCCTTTTCCCATGGGAAAGCGTCTCTATGCCGTGGCGTACGACATTCCGGACGACACTCGCCGGGTGAAGCTGGCCAACCTCCTGAAAAGCTACGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAGCGGCTTCTGGAGGACCTGCGGCGGAGGGCCAGGCGGCTTTTGGACCTGGGCCAGGACGCCTTGCGCATCTACCCCGTGGCGGGCCAGGTGGAGGTTCTGGGCGTGGGGCCTTTGCCGGAGCTCCGGGAGGTCCAGGTGCTGTGAGGCCCCGCGTGCACACTTCACACGGGTCCTGGGGAGGCCCGTTTATACTCGGGCCATGCTTGGGGACGGCCTGAGCGTGGCCCTGGCGGGACTTTTGCACGACGTGGGCAAGCTCTATTCCCGCGCCCGCTGGGGCGAGCGGGACGATCGGGTTCCCGACCGCACCCACACCGCCTACACTGCCCACTTCTTCCGGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 138082-139171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 138082 36 100.0 41 .................................... TGGGGTATATCCTCTTTATCCCCGGTATTCTTGACAGGTCT 138159 36 100.0 37 .................................... TTCACAAAATCGTACTTGAGGCAAGCGAAAGCGACGA 138232 36 100.0 38 .................................... CCCTGAGGGGGAGGAGGAGGTGGCTTGCGGGTAAAAAA 138306 36 100.0 42 .................................... TTCGAAGCGCCCCGCCCCGAGGCACTTCCCACACCCTTTCCC 138384 36 100.0 44 .................................... GTGCTCCTTCAAACTCCTCTCCAGAGCCTCCTGGATCAGTTCAT 138464 36 100.0 40 .................................... ACTCCCTCTACGCCCCCTAACTCGCGGTACGCGAAGAGGG 138540 36 97.2 36 ........A........................... GACAGGTAAGGGTGTAGAGGTCGTCCAGCTTCATAA 138612 36 97.2 37 ........A........................... AAGTGAGGATGTACCCCCGCCCCTTGAGCTTCTTCTC 138685 36 100.0 37 .................................... CTTTGCGCCGCGCGGCCTAGCGCCGACCGCGTATCCC 138758 36 100.0 37 .................................... CTTTAAGGGAGTCGCCTTCGCCCACGTCTTCCTTGGT 138831 36 100.0 38 .................................... GCGAGGAGCCGCCGCACCCCGATGATGCGCCCCTGGTC 138905 36 100.0 40 .................................... TCCTTCTTTGGGCCAGCTGATGCCCCAGGCAAGCCCCGGT 138981 36 100.0 41 .................................... GCTTCTCCGTTGCGCTGAGTTCGCCGTTGCTCCAGACATGG 139058 36 100.0 42 .................................... GTGTGGCCGCGGCTGCGCGCCGCGCGGCCCTTGCGCCCATGC 139136 36 91.7 0 ..............................G..CT. | ========== ====== ====== ====== ==================================== ============================================ ================== 15 36 99.1 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CGGCCCGGTCGGCCACCTCCAAAAGCCCCTCCTCGGCCAGGGCCAGGAGCAGGGGGCCTCCTCCTCCGGGAGGAGGTCTAAGGCCAGGCGGAGGACCTCCGCCTCGGTGCGCCCCGTGGCGCGGGCTAAGCGCGTGCGCCTTTCCTCCGGGGCCAGGGGCCACTTGACACGACGGAACAGGCATTTTTCTCGCTATCGCAAAGGGAAGTAAAGTAGCGAAGGTTCTTTTTGAGGCACATTTGGACGGGGTACACCGTTTCAGCGAGGTGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCAGCTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTCTATCGGTGTAAGCCCTCAAAAACCCTCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CGGGCCTGGGCTTGTATCCTTTCCCTAGGAGGCGTCCATGCAAGCCCCGGTGTACCTGTGCCTTCTGGGCAACGACCCGGCCCCGGCCTACTTGGGCTTGAAGGTGGTGGAGCGGGAGGCGGGGAGGGTGGCGAAGGCCGTCTTCTACTCCTTCCCGGCGTGGAACGAGGAGTACGGGAAAAAGCGCCAGGCCTTCTTCCGCCTCCTTTCCGAAAAGGGCGTCCTCTACGAGGAAAGGCCCCTAGAAAAGGGACTGGAAGAAGCGGAGGCCCGGGAGGTCTGGGTGAACCTCACGGGAGGGGCCAAGTACTGGGCGGTCCGGTTCCTCGGGCACTGGCGGCGGCCCGGCGCCCGGGTCTTCCTCGTGGAGGGCCACCGCGCCCTCGAGGCGCCCAGGGCCCTTTTCCTCTGGCCCCGGGAGGAGGAGCGCTCCCTTGAGGCCGAGGCCCTCACCCTGGAGGAGTACGCCAGGCTCTATCTGGAGCCCCTGGGGGAGGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 169764-169209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 169763 37 100.0 37 ..................................... CCGGAGGAGGTCATAGGTGAGAAGGCCGTCTTAGAGG 169689 37 100.0 38 ..................................... CGCCGCCACCACGAGGAGATCCTCGCCGAGCTCCGCCT 169614 37 100.0 37 ..................................... TGCGGCGGGGCCCTGGTGGAGGACCCACTAGGGGGGG 169540 37 100.0 37 ..................................... GTGGAGGGCCTGCGGGAGATCGTCCGGCGCGCCCCGG 169466 37 100.0 38 ..................................... TATGGGTGGTTCTATTGGGTGGTTAGGGGCAACTGGGT 169391 37 100.0 34 ..................................... AGGTCCTCGGCCTGGACCTACAGGCGGAGAGCGC 169320 37 100.0 38 ..................................... CACCAGGTGCTCCAGCTCATTAAGAGCCAGGCGGCCAG 169245 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GCCCGAAGGCTTCCCAACCCTCATGCTGCCCTGAGCCCAGGGCTACGTAAGCCAAGGCCGCACCCCAGACGGCATGGGGCACGCTGTTTGTCCTTTTTCCCTCCGCCGCGACCTTGAGGTAGGCCTGGAAATCCCGAGTGGCCTTCCCAAGGTCGTGAAGGAGGGCCAGGGCCTGCCCCAGACTTGGGGTGCCAAAGTGCTGGGCAAAGCCCCCGGCTAGGCGGGAAACGGCCTCGAGGTGGTCTTTGAGGGCGTGCCAGGCTCCCTGGGGGTTAGGGGTGTGGGCTTTGGGGTCCATACATCCTATGATGAGGGCAATGCGCGAACCCCAAGTGCGCGCAGAAACCCCGGGGGGTTCGCGCAAAGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTTGGGCACTCTGTGCCAAGCCCCTGGGCGAGGGTCCCGAGAGGGGGGTCGCCGCGAAGGACCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : CCCCAACGCCTGGCCCGGCTCAGGTACCGGGACCGGACGGGGGAGTAGCCCCAGGAGAGCAAGCCAAGCGGCGTTGCCGCCTACGCGGCCCCTCAGCGGATCTGCACCCGGTAGCACACCTCCCCCGCCTCCCCCGGGCCCACGTTGCCCACCTCCACCCTCACCACCCCGCCCGAGACCTCCCCGGCGTCGTCCCCCTGGGAGGCGGTGAGGTAGAGGGTGGCGCTCCCGTGGCTCCAGCGGATGGCCTTTCCCCCGTAATCCGGCACGGAGGGGAGAGGATCCGTGAAGAAAGGCACCGGGTCGGTGAGGACGAACTGGCTCACGGGGGCCGTGCCCAGGTTGCGGTAGGCCACGCAGTACTCCAGCACCTCCCCGGGCCTCCCCTCCCCCAGGGTGCCGAACCCCGTGCCCTGGCTGACGTTCCGCACCCTCTTCTCCAGCCGGACCTCGCCCCCCGAGACCGTGGTGGTGTCGGCGAGGCTTCGGAGGTCCACCAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 5 176196-176751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 176196 37 100.0 34 ..................................... CCCGCGCACCCCTCCACGGGGCATAGCAGGTCAT 176267 37 97.3 42 ......T.............................. GGGGCGGGCCGCCATATCTGTACCCGCTCTAGAGCAACTGGA 176346 37 97.3 35 ......T.............................. CGGGAGGAGGCGCTGGAGGTGCGGAGCTACGAGGC 176418 37 100.0 38 ..................................... CCCTCAGGGTCCGTTACTTCCACAAAAGTTTTAAAGTG 176493 37 100.0 39 ..................................... GCACAGCTTTCGGACGGTGGCTGGCGAAACCCCCAACTC 176569 37 97.3 39 ....................................T ATGCCCAAGAGGTTGAGCACGCTGCACCTCCTTGCCGAT 176645 37 97.3 33 ............T........................ CCGCCCGGTCCCTGGAGCACCAGCCTGTCCCAC 176715 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 98.6 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : TGGCTCGTCCGGCCGGAGGGCCTCGAGGACTTACCGCCCCATGTGGGATGAATCCATCCCCATTTCCGCCCTCCAGCACTTCGTCTACTGCCCCAGGCAGTGTGCGCTCATCCACCTAGAAGGAGTCTGGGAGGATAACCTCTACACCCTTCGGGGTCGCCGGGCCCACGAAGGGTTGGACCTGCCGGAAGGGCTGGTGCGGGAAGGGGTGAGGGTAGAGTACGCCCTCCCCCTTTTCTCCGAGCGCTTAGGCCTAGTGGGCCGGGCCGACGTGGTGGAGTTCCACGGCGGAGTGCCCTACCCGGTGGAGCACAAGGTGGGCCCCCGGCGGGCACGCAAGGCGGACGAGGCTACCTCCGCGCAAAGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTTGGGCACTCTGTGCCAAGCCCCTGGGCGAGGGTCCCGAGAGGGGGGTCGCCGCGAAGGACCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : CAAACTTGCCATCCTGGTCATGCGTAGTCCCCACGCGTGTGGGGATGGGCCGGCGCTAAAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTCTCGGCCCGCACCGCCACCTCTCCCCCGTCCAGGGCTTCCACCTTTCCCTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCCGGCATGGAGCGGGGGGCGAGCTGGCCGTTTCGCAGGTAGGCCCTTTCGGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCCTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : GTTGCATCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 6 190656-191149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 190656 36 100.0 42 .................................... GGCCCCTGACGAGGTTCCTAGGTGAGGTCGGTCTCCTTCTGG 190734 36 100.0 37 .................................... CCCCCGTGTGGGAGGTGGACCTGGGGGGCCTCGAGAT 190807 36 100.0 40 .................................... GCTCCGGGTGGGCCCCGTCCTCCTCGGGCCCGAGAGGAGA 190883 36 100.0 37 .................................... TGATGCTGATCATTGCTCACCTCCTGCCCGGAGGTGG 190956 36 97.2 42 ...............G.................... AAATGCGGTCCTGGAGTGGGAATACAACGAAGTTTCCGTTCA 191034 36 97.2 44 ...............G.................... ACGGTACCGGCGAAGGACTTGGCCACACCTTGAATGACCGTCAT 191114 36 91.7 0 ...............G................AT.. | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 98.0 40 GTTGCAAGGGATTGAACCCCGTAAGGGGATTGCGAC # Left flank : GGGATAGGAAAGTGTTGCCGGTCCTCAAGGAGTCAGCGATAGGCCGCCAGCCCCTTGGAGGGCATGGGCACGGGCCAGCCCGTAGGCTGAAGGCGGCCCTTCTGGGGCGAGGGGAGTACACGCCCTTTTACTTACGGAGGCACTAGTCACTACACTTATGCGCGAAATTGCGGGGCGAAGGCACGTTAATCACTTTCTCATCTCCTAGTTTCCCTTTTCAAGGGATTTTCCGCTAAAAAATAGACCCGGTCCACCGTTGCCCTGAGATGCTATAATGCCCTTGTCCGGACCTCCGGGCGGGGATCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGTGGTGCCGTCCGGGACGGGGTTCTTAGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTGCCCACCATCCGCCTGAGGAGCTTGTGGGCCACGGCTAAAAGCGCCTGCCTCGCCGCCCGGAGGGACAAGAACCCCCTTTGGGGGCCCCTATCTTCGCGAAAGCTACGTTTCGCGAAGAAGAGACCCCACTGCCCCGCAGTTTCTTGGAAATCCACCGGCACTAGAAAGGACGAAGAAGCCTTTCGGGTACCCACCCCTTCCCCAAGGACCCGCAGCCCTCCCTTCAAAAGGGCGGAGTTCCTGTCGGTTATCCGGCAGGAACCCCCAGGCGACCCGGGGCCGCTTACCGCCGCCTTCACTTCCGTCCTTCCGAGCGGGAGCGGAGGGCCCGGGAGGCCATCGCCCTCGTGGGCCCGGAGGGATTTGAAGAGGCCCTGCCCAGGGAGCTCTTCCCGAGCACCTGCTTAGACGGGTGCCCTTGGTAAAGGAGATCCACCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAACCCCGTAAGGGGATTGCGAC # Alternate repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 7 229909-229438 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 229908 36 100.0 37 .................................... CTTCTCCAGCACCCGCCGCAGAGCTGTGGTATACTGA 229835 36 100.0 37 .................................... GTGTCGGAGAAGTTCCAGAGGCGGAAGACGAGATAGG 229762 36 100.0 37 .................................... GGGGACCGGAGGGGGCACCGCATCCGGCCCAGGGAGA 229689 36 100.0 36 .................................... CCGCTACCCCGGCATGGAGTCCTACCAGCCTCCCTC 229617 36 100.0 36 .................................... CTGGCCCGGGACCTCAACGTGGCCGTCCTCGCCATC 229545 36 100.0 36 .................................... AGGGATGCAGGGCGCTTGGATCTTGGCGGTGGCGGT 229473 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 100.0 37 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCCGATGACCGTCGCCGGGCACGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAGCAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTCTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGACTGCTCTTTTGAATTGCATACTTGTCCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTAAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : TGCAGCCCAATAGGGGCTTGTCTTCACTGGACCAGGAGGCGCACCCCCCTGGCCGGGGGCTTGGCCTCCGCCTCCCCCCGGGGCTCCTCCGGGTCCAGGGCCCCGTCCCCGTCCCGGTCCAGGAAGGCGAGGAGGCGGTAGGTCCCGGGGGAGAGGCCTTCAAGCCGGAAGGGCCCCCCTTCCGGGGGCAGGGCGAGGCTCCGGCAAGCGCCTCCCTCGGAGCAGGCGGAGAGCACCACCCGGGCGGGAAGGGCCTCCACCTGGACCTCCGCCGTGGCCCAGTCCCCACCCCCTTCCAGGCGCACCCGGTAGGCCCCGGGGGCCGTCCCCGTGGGCGCCCGCACCCGGAGGTGGGCCGTGCCCTGGGCGGGGTTCGGGGCGAGGTAGGCGGCAAGCCCCCCTTCCGCCGCCACCCGCACGGGGACCGGGTAGGGGCTTAGGACCTCCACGGGGAGGCTCCCCTCCTCCCCGGGCTTCAGGGCCAGGCGGCCCTCCACCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 8 240776-241749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 240776 36 100.0 36 .................................... TCCGGCTCGTGAACGGCGAGATTCAGATCATTCCCG 240848 36 100.0 35 .................................... CATCACCTCGGCCCGGGCCAGGACCACCCCCACCC 240919 36 100.0 38 .................................... CCGCCTGGCTCGCCGGCCCCATCGCCCGCCTCTGGCAG 240993 36 100.0 36 .................................... CGCTATGGACCGAAACGACTGCCCACTCGCGAGCGC 241065 36 100.0 37 .................................... AACACAGCGTAGACCGTAACGGCCCCCAGCGCGATGC 241138 36 100.0 37 .................................... CCGAACCGCCGCCTCAGCGCGGTGAGGACCTCGCCCA 241211 36 100.0 34 .................................... GTGCGGCTCGTGACCAAGTAGCCATGGGGTACTT 241281 36 100.0 36 .................................... TTCGGAACCCGCCTGGAGTACGCCCCATATCAGCAG 241353 36 100.0 35 .................................... CGCTGGGCGGGGATCGCGGCGAGCGTGGTCCTCCC 241424 36 100.0 37 .................................... TGTACGCCCTGCGAAACTTTGTGCTCCAAAGCGTGGT 241497 36 100.0 38 .................................... AGGGCCTCGAGGCCCTTCACCAGGAGGCCGAGGCGGCG 241571 36 100.0 35 .................................... CTGAGGGAGCTGGTAAACGAGCTTGGGAACGCCTG 241642 36 100.0 36 .................................... ATTCGCCGCCTCCCAGTAGCCGCGCCACCACCTCAG 241714 36 94.4 0 ............T....................T.. | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.6 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : TCCTTACAACCCAAAGGAAGAGGCCGCCTTGCGGGGGCTTTTTGAGTTGGACCTCGAGGTGGCGGGCTTCCGCAACCTGCGCTTCCACCGGGTACAGGCGGGGAAGGGCTTTTTCCCGGGCTTCACAGGTGAGATGACCCTGAGGCTTTGGAGCCAGAGCCTCGAGGCCCGGGAGGCCCTGGGGCGCCTCCACGCCCTAGCCTTCTTCAGCGGCGTGGGGGCTAAGACCCCCTACGGCATGGGCCTGGCAGTCCCCCTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCGATATGGCATCGGGGGTTTGCGCCTTCTGGAAGGTCTTTTCTTGAATCGCATACCCACCTTATCCCCCCAATCGCGCTCGCACCGCTCCAGGACGGGAAAAACGCCCTTTTCTCTCGGGTCTTTCCCTTGCGCGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CTGTCTCGCCTGTCAAGCGACCCCTTGGTGCGGCTGGGTCGCGTAGTACTCCCTGAGCCTGCCCATCATCCGCCCGAGGAGCTTGTGGGCCACGGCTAAAAGCGCCTGTTTTTTTCTCTTCCCTCGGGAGAGCAAACGGTGGTAGAAGGCCCGCATCTCTGGGTCATGGCGCACCGCCACCAGGGCCCCCATGTAGAGCTTTCGCCGCAAGAGGGGAGGCCCTTTTCTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATCAGCCCCGCGTAGGAGGCTGCCGCCTTCGCCCGGCCCCAGAGGTGGGGCGGGAGGAGGGCCAGCACCGCTGCCGCCGCCAGGTAACCCCATCACGGGGTCCAGAAGCGGAGGGCGGGAAAGGCCCCCAGGTCCCGGTAGTTCAGCGTCCAAACGGGCGCCCCAAGACGCAGGGCGAGGAGGGCCACGCCCGCGTCCTCCAGGGTGCCCCCCCATCCGGGCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 9 250925-250199 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053288.1 Thermus thermophilus strain HB27c plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 250924 36 100.0 40 .................................... CTCTTTCAGGATCCACGCAAACTCCCTTCCTTGGGGCTTA 250848 36 100.0 41 .................................... CCCGGGCGAGAGGGGCGGCCTCGGGGTCCGACAAGGCCTCC 250771 36 100.0 40 .................................... GCCGCCCCAAGTCCGAAAAACACGCTTCTTAACACCTTAC 250695 36 100.0 42 .................................... TTTCTGGACTGCCTTCTGGCCTGAGTGCGAGGATCGCCCTCG 250617 36 100.0 37 .................................... ACTTCAGCTTACGCCTCAAGGCTCACCTCCACTAGGG 250544 36 100.0 45 .................................... GATTGCGACCCAGGGAGGAGGGCCCTGGTTTCGCCTCTTTCAAAT 250463 36 100.0 41 .................................... CGTACGTGTAGAGGGCTTCTTCGCCCGTGTAGAGGGCTTCT 250386 36 100.0 41 .................................... TTGAAGTACTGCTCAAGCTTCTTGCCGAACTCCCCTGCCTT 250309 36 100.0 39 .................................... TTGTAGGCAACGGGTTTGTCCTGGGCCTTAGTTTCCTGA 250234 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ============================================= ================== 10 36 99.4 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGCGCTTGTTGGAGGGGGTGAGCCATCCTCTGGGGTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCCCAGCGGCTGAAGGCGGCCCTTCTGGGGCGGGGGGAGTACACTCCCTTTTACCTATGGCGGTAGGGGCAACTCTTGCTATACTTACCCGCAACATTGCGATGCAACTGGCTTTCTTTGCGCTTTTTAAAACAAAGCTCACTTTGGGAGGCGTTTCTTCGCCGATATTTTAACCTGGTGCAACGTTGCGGTGTGTGCTATACTCTTGCCAACCCGGACCTCCGGGTGGGGATCTTGAAAGCCGTTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCTGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCGGGACGGGGTTCTTTGGGGGGTACC # Right flank : TGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCTCTGAGCCTGCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATTTCCGGGTCATGGCGCACTGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGGGGTCCTTTCTTGGAGAGCCGACTCCTCTCCACGCGCTTTCCCGACTCCTCCCGCTCGGGGGTCAGCCCCGCGTAGGAGGCCGCCCTCTTTGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCCGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGGCCTCCGCCTCCGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCAAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACTTCACCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //