Array 1 8954-11857 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHOB01000026.1 Cereibacter sphaeroides strain YL101 NODE_26_length_75964_cov_34.562344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 8954 32 100.0 35 ................................ ATGTCGAAGATCGTGAGCGTCTGCTGGATCGCCTC 9021 32 100.0 34 ................................ CTGATCGGGAAATCGAAGCCCGACGCCGCACCGC 9087 32 100.0 34 ................................ GGATCTGGCTCGATGTCTGCTGCCGGGCTGGTCA 9153 32 100.0 35 ................................ GGTTTGCGCGCCTGTGGATCATCGTCCGGCAGGAT 9220 32 100.0 35 ................................ GAGGATGTCGGCCGCCAGCACCGACACCTGATCGC 9287 32 100.0 34 ................................ ATGAGATCCTCTCAGCGGTAGACGGCGACAGATA 9353 32 100.0 33 ................................ TGGATCCGGCCAGGCACGATCCGGTCAGCGAGG 9418 32 100.0 34 ................................ AATGCGTGGTTCCGCAAGGGCGACCGGGCGCTGA 9484 32 100.0 33 ................................ ATGTCAGCCGCCCCGGCAGAAGGTCGGGTTGAA 9549 32 100.0 35 ................................ ATGAACATGCCTCGAGACAGCCAAGGCCGCATCCC 9616 32 100.0 35 ................................ GATCTGCATCAGGCTGTGACCGTCGGTCTGGTAGG 9683 32 100.0 35 ................................ AACGCCAGCCCAATGAAGAAGCCCCGCACCCGCTC 9750 32 100.0 36 ................................ GGCCACCACATGCGCGCGGTGGCGGCGGAGCTGATC 9818 32 100.0 34 ................................ GGCCGCAGCACCGGCCATGCGGTCGAGGAGCCGC 9884 32 100.0 38 ................................ GGCGAGCACCCGCAGGGTCAGCCGCTCCCATCGCTGGT 9954 32 100.0 34 ................................ CTCCGCCAAGCCCGTCGCCAGCGCTGCCGCTGCC 10020 32 100.0 34 ................................ GCCTGATCCCCGCCCGCCACAATGGCGGGCTCGC 10086 32 100.0 34 ................................ CACCTGTCTGCGGGTTGCCTCGGCACCGAGCGCG 10152 32 100.0 35 ................................ CCGCCGGACGCCAACGCCCGCCTGATCGCCGCCGC 10219 32 100.0 35 ................................ GCTGGCACCCCCGGCACGCCGCTTTCGACCTTCGC 10286 32 100.0 35 ................................ CGCGCAGGTTCCCGAGGGCGCCGACATGGCCGATG 10353 32 100.0 36 ................................ GGCTTCTCGGCCGCGGCCTCAATGTGGGGCAGCCCG 10421 32 100.0 34 ................................ CCGGGTGGCCGATCATGACCGGCGGGACCCCGAA 10487 32 100.0 35 ................................ CCGGCTGACACCGTGATCGAGGGCGTCTGGGAGGA 10554 32 100.0 33 ................................ CACGTCGCATCCGTCCATTCGATGGCGCTGGTC 10619 32 100.0 34 ................................ GATCGTTCCGTTGTGTTGGCCCGGGCATCGCCCT 10685 32 100.0 34 ................................ CCGGTCGGGGCGCGCTCGTGCTCCAGCAGCCAGC 10751 32 100.0 37 ................................ GCATGCAGTGACATATCCCCTACCCGGCAAATGACAC 10820 32 100.0 35 ................................ CGCCGCATCAGCTGGCTGCTCGCCCAGCTCGCCGA 10887 32 100.0 36 ................................ GTTCTGCGTCCGCTGCCAGGTCGCGCGGTCGCTCCA 10955 32 100.0 35 ................................ CGCGCGTGGTATCGCGACAACCCGCAGCACCGCGC 11022 32 100.0 35 ................................ TCCGGCACGAACAAGGTCGAGTTCAAGCTGACGCA 11089 32 100.0 35 ................................ CCCGAGCTGGACCGCACGGCCGCGCAGGCCGAAGC 11156 32 100.0 36 ................................ AGGACGGAGATTCCGAGCCGCGGAGCACCCGCGCCA 11224 32 100.0 34 ................................ GCAGCCCACCGGGCGCTGGTCGGCATGGGCAGCA 11290 32 100.0 36 ................................ CGCATCGTCCATCGCACCTTCGAGGACCGCGCCCAC 11358 32 100.0 34 ................................ ACTTCCCAGTCGATCGGATCGCGGAACACGCCGT 11424 32 100.0 35 ................................ ACCATGCCCATGCCGCCCTTGAAGATCGGGTTCGC 11491 32 100.0 36 ................................ TCATTCTCATCCCGGGCAGGCACCCGGGAGGGCGCC 11559 32 100.0 35 ................................ GACATCGGCAGCGCGGCGCACGAGCTGATGACCGG 11626 32 100.0 34 ................................ CACTTCCCTCTGCGCCGCCTCCAGCGCGGCCAAA 11692 32 100.0 36 ................................ GGAACATACCACACCTGGAGCGCCGGGGGTGGCCGG 11760 32 100.0 34 ................................ CTGCTGCGCCTGCTGCTGTTGCTGCATCGCGGCG 11826 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ ====================================== ================== 44 32 99.9 35 GTCGCCCCTCACGCGGGGGCGTGGATCGAAAC # Left flank : CGCTTATCCGCCCTGGTTCTGGAGCTGACATGCTGGTCCTCGTCACCTACGATGTGAACACGCTCGAGCCAGGCGGCAAAAAGCGCCTGCGCCAGATCGCGGCCAGTTGCGAGGACTACGGGCAGCGGGTTCAATATTCGGTTTTCGAGATCGAGGTTGATCCAGCACAATGGACGAAGCTGAAGTCCCGGCTTGAGGCGATCATCAAACCGCAGCACGATAGTCTGCGCTACTATTACCTCGGCTCGAACTGGTCGAGGAAGGTCGAGCATGTTGGCGCCAAACCTGCCACGGACCTCAATGGCCCGTTGATCATCTGACCTTGCGAACCCCAAGCGTGCCCGCAAGGCACCCGCGGTTCGCACCTGAGCGAGCTCTTTGAAATCGTTCGGAACCTGACGGAACCAGAAAAATAATCGGCGACACAGCATTCCGTTGGGCCCTCCTTCGCATTGTTGACCGAATTTACACATCGTGTGGAACGTTCTATTCGCACGGCA # Right flank : CCAGTAGGTCTGGTCGGCCTGCTCAAGCGTCATGGTTGCCCCTCACGCGGGGGAGGTCTACCATCTTCGCCACCATCTCCTTGAACCGCGCCGGGCGTGCCCCGCGCAGCATGACGCCAAGCGCCGGCACGCCGCGCGGAAAGCCGACTTGTAGCGCTGCTGCGCGGCACTCGCAGCGAAACTCGGCAAGAGGAGAAGATTCTCGCTTCTCGATGTCACAACCGCCTTCCCTCGGCCGTCATGGGGGTGTCAGTTGCAAAAGGAGAGAGCGATGACGCCCCGCATGACCGACCATTTCAAACGCATCGGCCAAGCCTTCCAGGGACTGGTCACCTTCGAGACCGAACTGCGCAAGGGTCTCCTGGAACCAGCGCTGCTGCATCTGGTGAAGATGCGCGCCAGCCAGCTCAACGGCTGCGCCTTCTGTCTGCAGATGCACGCTTCCGAGGCGCTGAAGGACGGCGAAACTCACCTGCGGCTGCACATGCTGGCGGGCTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7813-7579 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHOB01000027.1 Cereibacter sphaeroides strain YL101 NODE_27_length_21137_cov_36.346737, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 7812 29 100.0 54 ............................. TGATCGGCCTGCGGGTTGCTGATGCCATCCCCGAGGATGGCAACGGCCGCCAGC 7729 29 100.0 32 ............................. GTAACGGCCTACCCGCTGCACCCCGTCGCCGG 7668 29 96.6 32 .........A................... TACGCCCAGCTCTCGGACAAGGTCGCCGAGGT 7607 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ====================================================== ================== 4 29 98.3 40 GGTTCCCCCGCGCCCGCGGGGATAGGCCC # Left flank : GACGGAAGCGGCTAAACGCTCTGATCCGATAGAGCGCGTGGCGCGGCGCCTCGCAGGTCGGGAGATCACTCGGCAGCAACTCATCCCCAAGATGATCGATCGCATCAAGTGCCTAATTGAGGCCAAGGAGGACTCCGGCTGATGCCACTGACGATCATCGTCACACGCGACGTCGAGTCCCGCTACCGCGGATTTCTTGCATCGGCCATGCTGGAAGTCGCACCCGGCGTCTACGTAGCGCCTGAAATGAGCGCCGGAGTTCGGGATCGGATGTGGACGATCGTAACAGGTTGGTGGGAAGCGTTAGGCAACGGCGCGATTGTCATGGTCTGGCGAGACAGCCTCGCACCTGGCGGGCTCCACATATCCACGCTTGGCGAACCACCGAAGGAAATTGTGGATGTCGAAGGGGTCTTGCTCGTCAAGCGAAAGTGAAGGCTGCGCTAACTCGCCTTCTTGTTCTTTCAAATCGTAGAAAGCTCATGTACTTGGGCGGCAGA # Right flank : GTCCTCTCAGCAGCGGCAGGGTCCACCTCATCGAGTTTTCGGCAGAGGGCAGCTTTGCCGCGGTGGTTACGCAGTGATCTAGCGCTTCTTGCTCGCGGTCACCGTCACGTCAGGTCCCCCTCGGGGTCCAGCGGGCGCGTCTCGACCATCGACGGCACCTTCGGTGGCACGATGACGATGCGGGCCTTGTGCTCGTGCTGGATCGGCCCGCCGTTCCTCCCTGCCACCTCGACCTGATCGGGCATATTCCAGCCCTGGGCCTTCATGATGCTGTCCAGCGCGGCCTTGCGGTCGGCCATCCTGATCTTGATGATGCGGACAGGTTCCGCGTCGGGACCGTCACCGGGCCGAACCTCGACATCCATGCTTTGAATGGCAGCTGCAGTGTCTTCGTCCAACTCCGCCGAGGGCTTGATGCGCCCTGCTTCATCGAAGAGCTTGCGGATGTCGCTGAAGCCGATGCGCTGGTATTGGCGGATCACCTCCTCCCGGGCGAGATC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGCCCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 2228-1573 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHOB01000092.1 Cereibacter sphaeroides strain YL101 NODE_94_length_44016_cov_39.666801, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 2227 37 100.0 33 ..................................... AAACGCCTTGGGACCTTTCAAACCATTGGCCAC 2157 37 100.0 33 ..................................... TAAAGATCCTGCATACCATCCGAGGTATGCACC 2087 37 100.0 34 ..................................... TCACCGCCTCCTTGCGGAGGGCGTCGAAGTCGGC 2016 37 100.0 32 ..................................... TCAGCTCGAGCCACGGCCCGACGTCATCCTCG 1947 37 100.0 31 ..................................... GAATTTCGAGAAATGGCGACGAGCGACGGAA 1879 37 100.0 31 ..................................... AACAGGAGAGCGGGCCCCCAGGACATCGTGC 1811 37 100.0 30 ..................................... GCCGTTGCCGTCGAACATGCCAGCGGCGAG 1744 37 97.3 31 .......C............................. ACGAAGCTCTCGACGATGTCGAAGCCCCGGA 1676 37 100.0 30 ..................................... TGAGAAGTCGTTGACTTCCGGAGCGTAGGC 1609 37 94.6 0 ..................................G.T | ========== ====== ====== ====== ===================================== ================================== ================== 10 37 99.2 32 GTTCCACTGACCTGTCCGCATGACGGCGGATTGAAAC # Left flank : CATCGGCGCCAGCGCTGCGTGGGAGGCCGGCTTTTCTGTCACCGGCGGCGCGCTCGATCCTTTCGTGCAGGCCTTCGGCGACCACATGCGCCGGACTGAACCCGCTTGGCCCGACGTGGCCCCGGTCACAGAGTTGCTGGGCTCCGCCACCCCGTCGGCCAAGCCCCGACACTATCTCCCGGTCAAGGACTACATGGTCAGACGCCGCGAGGCCTACGGCCAAGGCACGGGGCATTCAGCGCCTGAGAGGCTCCTTAACACGCGAATAGCAAGGAGCGGAACAGGTCGGAAAGGGCCTGACGAGCGGCCCCGGCCCCAGAACCGGGGCTGAAGAAGCCGCATTCAGCTTCAGAAGTTGGCTATGACTATGATAAGACAATTGAATCCGACGGGAGGTGCCGACAGACTATCAAGAGGTGCGTGTGAGCGGGGCGGCATGAAACTCGACTTCAGACATCGGCCGGAAAAAGTGTTTGAAAACAAAGCAGAACCCAGAGTAG # Right flank : ATTACGCCGAAGAGCCGAAGCGGATGTTGTTTCACTGGCGGCTGCCCATACTGGCCAGCGCGGGCGCCCACCTAGCTGAGCTTGACCGACCCGGGCGCATGGATCACCGAATTCGCGGCTTCGCATGCTCGTCGCGGGGATAGGCAAGGTCAGTAAGGCCTATCACTCGCCCTCAGAAAATCCAGCTTTCGTCGCTGCTCTCCAGCGGCAAAGCGTCGCCGAAGACGCGGCTGCGGGTCTCGCCGTCATGGCCAAGCACATAGACCCGCAGACTGTCACCTTGGCCGAGTTCCGCGGCCAGACGCTGCGAGAGGGCAGCGCAACGGGTCCGGGTCATACGGGTCTCGAAGACCGAATACTGCACCCGCGTCGCCTCGTCCTCGAGCAAGCGGGCGATCCGGCGGCGGCGGCGGTCGTTGCCGACGTCGTAGCTGAAGACGGTCAGCATCTCGCCACGGGCCATTCAAGCCTCCATCAAATATGGGCGGAACAGTGCGGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCACTGACCTGTCCGCATGACGGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 26465-27190 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHOB01000092.1 Cereibacter sphaeroides strain YL101 NODE_94_length_44016_cov_39.666801, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 26465 37 94.6 31 TG................................... GAAGCCGGGGATACGACGGGGAGCAGTGTAA 26533 37 100.0 31 ..................................... GGGCGATAGTGGTGTCCGTGCCGTCGGCGGC 26601 37 100.0 34 ..................................... GAAGTACAATGACCAGGAGGGCCAGGTAAGCCCG 26672 37 100.0 32 ..................................... CCTGTTCAGGTCAGTGATAGGGGTGAAGTCAG 26741 37 100.0 32 ..................................... AGCCACACACCAGTGGTGCAGTCAGCCCCAAG 26810 37 100.0 30 ..................................... CCGAGAGCGCGGTGAAAGAAAACGCCAGTG 26877 37 100.0 31 ..................................... TCCCCGGCCAGCGCGCGGAGGGCGGCGCGGT 26945 37 100.0 37 ..................................... GCGGGGAACGAGAACGACCACCGGCTGCTCACCCGCG 27019 37 100.0 32 ..................................... GCCGAAGGCGCGGACTCTTTAGCCTCAGGCAC 27088 37 89.2 29 .....G........C..............G.....C. AGCAGGGTCTCCGTTTCGCCCTCGTTCAG 27154 37 81.1 0 ..T..G....G..T............G....C....G | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 96.8 32 GTCCCACTCACCTGTCCGCACGACGGCGGATTGAAAC # Left flank : GTGCGGCACCATGGCCATGTGGACGTGCATCTCGAGCTCTCAGTGGTAGGGCAGCGCGAGGTGCCCGCGTTCAGTGTCTCAGTAGAACTGGATCCGAACACGCGGGCAGTCCTATATTCTCGGTCGTATCCGGAGGCCCGGGTATTTAGGACACACGCGGCCCTGCGCCGACTGCTTATGCAGATGGGTGTCGAGGCTGCCCATGTGCCGCTCACGCCCGGGTCCGTCCGGTGCTGGGTGGGAAAGACGCGTGCTGCACCGCGCCCCAACGCGAGCAACCTGATCGCCTTCCCAGCGGTTTCGGGTGTGCAGCCTGTTTCTATGGAGCAGTCGTCGGCTAGACGGGCCAACACTCAGCTCTAACAGCGCGCTGAAAATCAATGGAAATCTTGTCACATGAGGAGACGGCTCGGCACGAGATACCTCCTTGAGCGACCTGCCAGGAGCCAGCTTCAGAAGCAATCTAAAATTGGCGAATGGAATCAAGGCGATCCACGGGA # Right flank : GTCGGCGGCTCCTTTCTCGATCTCGGCGGTCTGCAAGACGTGGGATCGAAGCATGGCGGGCCGGCGCCCCGTTCTCCCGTCCCGCGTCGGTAACTTGGCTTGTCGAGCATGACCGCGACGGAATGCTGCGGACCGGGTGCTTGACCGAGATGGGCGAGGGGCGTGACATGCGGCCGTGACACTCGACGCCTCGTTCCATCCCACTTCTCCCTTGACCGGCCTCGCGCGTGCGCTGGCAGGGGCCGAGGTGCGCGAGCGACCGTCCGACCTGGCCGAGGCTTGGGTCGAGCAGGGCATCACGCTTCGACTCGACGGTGCCGCGCGCGTGGCGCCCGGCTTTGGCGCACACCTGCGGCGATCTTTCCTCGGCGCGCTCGGTTCCGGCGCCTCAGCCGAGGCGCAGACGGGGCGGCCCTGTTCGTGGGAGCCGCCTTGCGCGCTAGATGTCTTCTGCCGTGAGCAGTTGCGCGGTCCGGCTGGCGACGGGCTGCCCAAGCCAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCACTCACCTGTCCGCACGACGGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA //