Array 1 145512-147126 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVPI01000063.1 Escherichia coli strain sheep13 sheep13_contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145512 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 145573 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 145634 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 145695 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 145756 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 145817 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 145878 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 145939 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 146000 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 146061 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 146122 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 146183 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 146244 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 146305 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 146366 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 146427 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 146488 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 146549 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 146610 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 146671 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 146732 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 146793 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 146854 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 146915 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 146976 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 147037 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 147098 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 162628-163328 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVPI01000063.1 Escherichia coli strain sheep13 sheep13_contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162628 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 162689 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 162750 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 162811 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 162872 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 162933 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 162994 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 163055 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 163116 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 163178 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 163239 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 163300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //