Array 1 214049-215338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQCC01000002.1 Pediococcus acidilactici strain DSM 19927 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 214049 36 100.0 30 .................................... TCTTGAAACCAACGTAGTAACCAGTATTGG 214115 36 100.0 30 .................................... TTATCCGGAGCAACGACTCCGCATGGATTT 214181 36 97.2 30 .........A.......................... CGTGGTTTCGATAAAGGCCGATGAAGATTC 214247 36 100.0 30 .................................... GGCTTCTTCCCGGCTTTGCGCAAGGCTTCC 214313 36 100.0 30 .................................... CAGAATAATATTCTGCAAGCTTTGAGTAAC 214379 36 100.0 30 .................................... CTAGATAAAAAACGTTGGAAAGCAATTCTT 214445 36 100.0 30 .................................... ACAAAACGGAGAAAAACACCCAAACCTACC 214511 36 100.0 30 .................................... TGATTGATTAATCAATGTTTTAAGAATCGG 214577 36 100.0 30 .................................... ATGACGGTGACCCATTGTTATTCAAACGTA 214643 36 100.0 30 .................................... TTTCTTCTCAAACGGCCATGTCCATTCGCC 214709 36 100.0 30 .................................... CTCAAATTGTTGAAGCGAATATTAAGTTCG 214775 36 100.0 30 .................................... TCATTGATTAATCAATGTTTTAAGAATCGG 214841 36 100.0 30 .................................... ATAACGGTGACCCATTGTTATTCAAACGTA 214907 36 100.0 30 .................................... TTCAAATTGTTGAAGCGAATATTAAGTTCG 214973 36 100.0 30 .................................... TCTCAATTTTGGGATAGCACCGGTGGTAGT 215039 36 100.0 30 .................................... AAGATTGATTATGCAAGAATGACTGAAACG 215105 36 100.0 30 .................................... TCGGGAATGTCGTCAACTTCCGTGGCGTGT 215171 36 100.0 30 .................................... AAGATTGATTATGCAAGAATGACTGAAAAA 215237 36 100.0 30 .................................... TTACCCGTTGGTTATATCACACCTATGGGC 215303 36 97.2 0 ..................................G. | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : CCAGGACTTAGTTATTCAAAAGTATTTAACTAAGATTGAACGGGTTTTTGCCGAAGGGTTGATGGATGAGCAACGTAACCAAATTCATGATCAGGTAAACCAACTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGGTAACCCATATGGTATAATTGAAGCGATTTTGAAGATTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTGATGTTGCACATTATTTGACAGCGACCCAAATTGAAGAACTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATTGAATTCACAGAAATAGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : CGTGGCTGGTTAGTTTGGGTATCTAAGGGAGTTTTCAGAAGGGGAATAAAGTTAAATGGAAGTCATAAAAAAGAGCCAAACAAGAATGAAAGGTTAACAATATTACTGGCGGTAATACAAACCATAATGAGAACTCTAGATTGGCTCGGGTACAGTTTTAAGAAATAGGATTAAGAGACGTAGATCTTTTTTGCCGCTCTCTATATATATTTTATAACGGAGGAATAAAAAAATGAAAAGAGAAAAAGCAGTTAACATAGTTATTGTATTGCTGTTAATTTCAATCGTGTTATCTATTTTAAATCTATTTAAGTAGGTGTGTATCGTGAGTTTAATAAAGAAGCACCTAGATTCTTATAGGATTGCTAAAGATAATAATATTACCTAGCCAATAATGACAAGGGGAATTAATAAGGACTTGGATAACTTATCGTTTAAGCATCTTAAAGCTATCTCCACTTCCCTAGGAAAAGATATAGTAACTTGTCGCAAAAGAATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //