Array 1 6207-5380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZC010000003.1 Listeria cossartiae subsp. cayugensis strain FSL L7-0123 NODE_3_length_480081_cov_101.768181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6206 36 100.0 30 .................................... AAAGATTTGGCGAAAGCAGGAACAAATGCA 6140 36 100.0 30 .................................... AAGCAAGCTATTGTCTGCGTCTGTGAAGCA 6074 36 100.0 30 .................................... TTTACAAAATAACGATCCGAATCCATGTGA 6008 36 100.0 30 .................................... TTTTTAGAATTATGGTATACGAAAGATGGT 5942 36 100.0 30 .................................... CGGATAGAGCTGGTGTATATCTGTCTGGTT 5876 36 100.0 30 .................................... TAGGAAAGTTATTGCTTGACATTACCGTTA 5810 36 100.0 30 .................................... CAATTGTTTTAAAATACGGACTTGTAACAT 5744 36 100.0 30 .................................... CTTTCGCAAAGAGGTTCTTTAAGCAGTTGA 5678 36 97.2 30 .............................A...... GGTAGACGCTGTTAGTATTCATATCGCCAA 5612 36 94.4 30 ............A................A...... ATGATTATCTGGATGATATTTACAATTAGG 5546 36 97.2 30 .............................A...... AACAAAGCAAGCTTACATGTAGCACCCATT 5480 36 88.9 29 ............A............A...A....C. ATCTGATGAAGATAACTACGCTGAAAAAA 5415 36 77.8 0 ......A......A......A..G.....A..T.TA | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 96.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTAGCAAAAC # Left flank : TTGATAAGTTGACTGCGACGATTAGTGAGTTAATAGGTTACGAGCTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTTTATAAATATTTATCAAAGAAAAAGTTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGGTAGAATTAAGAAAGTATACTTCTTTGTATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAATAGACGGCTTTTCGCAGGTTATTTTGGATCCAGATTATTTTCTACATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGTAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTCGGAGGATGAAAAAATTCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGTCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATTTGGATTTTTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGATATATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAGGTTGCTATAAGCGAAGGAGAATTACCATTAAAAGGCGAAGTGCAAAATAACGATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAATGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAAAATCTTCTTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACCCCTGAAAGCTTGATTTTAAGCGACAGAGAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 255315-255859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZC010000001.1 Listeria cossartiae subsp. cayugensis strain FSL L7-0123 NODE_1_length_1397946_cov_71.991009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 255315 29 100.0 34 ............................. GGGATAGATTTAATGACATTAATCGATATTTTAA 255378 29 100.0 36 ............................. AATACATACCGCAGAGCTATCATAGAAAATGGCAAA 255443 29 96.6 34 ..............G.............. GAGAAAATCAAGAGCGAGTATGCAACAGCAATGG 255506 29 100.0 34 ............................. CTCCTTTCGCACCTTAAAAAAGTCAATTGCAATA 255569 29 100.0 38 ............................. TCGTCTACTTCCCGAAAAGCTTCAAGCGCATATCTCCC 255636 29 100.0 35 ............................. ATATATAATTTGATTTTGAAACTAACGCTATAAAT 255700 29 89.7 37 .......T......A........A..... TTCGATGGCTATAACGCACGTTTGCATAAAGGCGAAA 255766 29 96.6 36 .......T..................... CTGCGTGTAGCAGAAAATACGTGGAGTCGTGAAACT 255831 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 97.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCTATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTGTCTGTCGACCTTGGGTAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGTTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCATTTCTATTCCCTACACAAAAAAGCCAACCAATAGGATTTAGACTTATTTTTTATCCCCATGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCTAAACCTCCAACTACACCACGCGCCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAACATGAAAGAACTAGCAAGTAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAACCATGGTACTTAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 270799-272516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZC010000001.1 Listeria cossartiae subsp. cayugensis strain FSL L7-0123 NODE_1_length_1397946_cov_71.991009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 270799 29 100.0 37 ............................. AAAAGTGTTCCGAACCAGCCAATGCCGACTAATACCA 270865 29 100.0 35 ............................. TCTTGTTAGCTTCGGATGAATTTTCACCGTATTCT 270929 29 100.0 34 ............................. CGTGGCGTATGGTGAGAACGTTCAGGGCTTTCCC 270992 29 100.0 36 ............................. TATGTCATTTTCGAATATTTCACGACTCATCTGAAA 271057 29 100.0 35 ............................. TCTGGTGCATATGTATTCTTTATTATGCCAGATGA 271121 29 100.0 37 ............................. ACTAAACAAAAAGTAAAAGCCGTAGAAACGTTCTCAC 271187 29 96.6 36 ..................A.......... TCCGTATTTGACTGGATAAGTTCAAATGATGATATA 271252 29 100.0 36 ............................. TTCTCTATCATATTTGTCTAGGAACTCTTGTATATC 271317 29 100.0 36 ............................. AATGAAAAACCGGTGGACGTGAATATCTACAAAGAC 271382 29 96.6 37 ...........C................. AGAGGCTAAAGTTGCAACTTGGATTTTTTTTATGAAG 271448 29 100.0 37 ............................. TCATAATGTATAATTGGAATTCCGGCACTACCTTCAT 271514 29 100.0 38 ............................. AAAAATGCTGATTTAGCTGATTTGGAGGGTATATTTCC 271581 29 100.0 37 ............................. TTGTAACTAATTGCGTACACCAGTAGTAATCTTGAGC 271647 29 100.0 34 ............................. ACTTGCATCGCATAAATACGTAGCATTGCGTTTA 271710 29 100.0 37 ............................. TATCAAAATAACGAAGTCCGTCCAGTAAAATTCTCTG 271776 29 100.0 37 ............................. TCAAGGGACAGGGATTTATGCGGTTGCTGGGGATGGC 271842 29 100.0 34 ............................. ATGAAATTTCTGTTTGTCTCTAAGCACGCTATTG 271905 29 100.0 35 ............................. AGATATAATTCCTTGGTTGATTCAAATTTACCATC 271969 29 100.0 36 ............................. CGACTCATCATTGAGTGCTTTCCGGATTCAATAGAA 272034 29 100.0 36 ............................. GCTCCCTCAATCGTATATGTTTTTTAATGTGTCTTT 272099 29 100.0 34 ............................. TCGAATATCCCTCCAGGAATGGTCATTGGTCCGC 272162 29 100.0 37 ............................. TTTCTTAAATTGAATGTCATCGTTTCTAATCCGCTTT 272228 29 100.0 35 ............................. CAAAAGGAAGTCGTATCTGAAAATAGTGAGGCTCC 272292 29 100.0 36 ............................. TTCGGGTAAAAAGTCATTACATGCGATTGTGAAAGT 272357 29 100.0 36 ............................. GGTGTTAACAATTACCTGACTGGGTTAAAATCAAAA 272422 29 96.6 36 ............................C TAGGCAGAGGTCCCGATTTTGAAATGAATGATTTCC 272487 29 86.2 0 ...............C......CA....C | C [272509] ========== ====== ====== ====== ============================= ====================================== ================== 27 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAGATCATTGGGGGAGAATGAGTTTGAAGTTTTTAAGCGGAAATTTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGTGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAGACCTGGACCCCAACCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTCGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //