Array 1 9030-10278 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWU01000024.1 Escherichia coli strain A377 NODE_18_length_102904_cov_81.8783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9030 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9091 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9152 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9213 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 9274 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 9335 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 9396 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 9457 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 9518 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 9579 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 9640 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9701 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9762 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9823 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9884 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9945 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 10006 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 10067 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 10128 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 10189 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 10250 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19267-17651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWU01000160.1 Escherichia coli strain A377 NODE_15_length_124354_cov_87.8406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19266 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 19205 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 19144 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 19083 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 19022 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 18961 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 18900 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 18839 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 18778 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 18717 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 18656 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 18595 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 18534 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 18473 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 18412 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 18351 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 18289 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 18228 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 18167 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 18106 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 18045 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 17984 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 17923 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 17862 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 17801 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 17740 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 17679 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //