Array 1 40785-41019 **** Predicted by CRISPRDetect 2.4 *** >NC_017472.1 Lactobacillus amylovorus GRL1118 plasmid p2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 40785 36 100.0 30 .................................... CTTTAATTTTATCATCATTTGGAATATACT 40851 36 100.0 30 .................................... AAAATACTGATAAATCAATGCTTAGTTTAG 40917 36 100.0 31 .................................... TAAGCTCATTTCTGCATCTAATACCCGATTG 40984 36 97.2 0 ..............................G..... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 99.3 31 GTTTTCGGTGGTTGTCATTTCAAGCAGGTAAATACC # Left flank : CGGGGTTATCAGCAATTCATGGAATATTTATGATGGTATCTTAAAAGACCCAGAAGAGGGCGAAGTATCCGTTGAGATCACTTTCTTCAAAGAAAAGGCATTTCTTGTTAATGTATTTGATTTAATGAGAAAAAACGGTAAGACTTTACTACTAACGAAAGACGACATAGAAAACTTAAAACGATATATTGAGGTGCTAGATGGCTCTCAAGCTTTAAGGAAAAAATTTGAGGCTTACGCAACATTAAGCGATGAAATGGTTAAAACACTAAGTGATGCCGGTATTCTTTTAACTAGACTTGATAATCATTATCGAACTAAGCCTTATCGTTGGGATTATGCTCGAACAACAGACATAAAGTCATAAAAACTCACAACTATCAGATCAGAAGATAGGCTTTGTAAGAACAAAGCTTATTTTTTTGCTTTGAAAGTTTTGTTTCAACAAGTATAATTGGATTAGCAATCATCAGAAATTAAAATAATATGATAACACATCC # Right flank : CTAAATTAAACAAAAAGCATCCCTGAAAGATGAGACTTGATTAGATGTCTTATCTTAGGGATGCTTATTTTTTTGATTTAAAAGTTAAAATTTTAAATAAAACAGGTACACGGTTTAAGCTGTTAAATAATACCCACGTAAGTGGGGATGACCCTTATCCATCAAATCAAACGTACACGACTACAGAATAATACCCACGTAAGTGGGAATGACCCCTGTTTTAACGCACTATCACGATAAGGAATAAGTTTTAAGAGATGTACAAAAGAATGATTCTTAATTTATAAAAAAGGATCGTTCTTTTTTATACATAAAATCAAGTATTATCAGTAATTTTCTTGATTAATTTACACTATATTTAATAAAACTGCTTGGGCAGCAGACTATAAAAGTAGTCAAGCTATAAGGAGAAAAGAACTATACCAATTGACTAAGGTCAATGACAATTAGAGGCTAGCACCTGATGATCGAATAAACAAACTAAAAAAGAAAATACCATG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGGTGGTTGTCATTTCAAGCAGGTAAATACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1001645-1002708 **** Predicted by CRISPRDetect 2.4 *** >NC_017470.1 Lactobacillus amylovorus GRL1118, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1001645 28 100.0 33 ............................ CAAAAACAGCTTTAGCACCAGCACTATGGTAAG 1001706 28 100.0 33 ............................ TACTCCCCGAGCTTTTAACCGACGTCGCTTTAA 1001767 28 100.0 33 ............................ TCATCTATTCGTTGCTTAAAAATTTTTCGTTGT 1001828 28 100.0 33 ............................ TATTCGGATCGTATGGTCAATTTGCGATTTATA 1001889 28 100.0 33 ............................ TTATTCCGTCTGCGTAGTCATAGCCACCAACAA 1001950 28 100.0 33 ............................ TAATCAGATTCTAGGAAGGAGGAAAACATGGCA 1002011 28 100.0 33 ............................ TAATCAGATTCTAGGAAGGAGGAAAACATGGCA 1002072 28 100.0 33 ............................ TATCAGTAACATAGTTGTCCGTGATAGCAGATT 1002133 28 100.0 33 ............................ CGTGGAACGCTTACGGTAACACCGTCAATCGAG 1002194 28 100.0 33 ............................ TCGGCATTGTGGGATGCCAGCGCTGGGCTTTAT 1002255 28 100.0 33 ............................ CATGGACCACTTGGTTGAAGCCAGCACTAAGCT 1002316 28 100.0 33 ............................ CCAGTCCGACTACCACCAGCTCAAAACAGTGGG 1002377 28 100.0 33 ............................ TGTTTGACCAAGTTTTACAGACTTTAATAATGG 1002438 28 100.0 33 ............................ CGTGCGGCGCCACTCGTTTGGCGTGCGGTAAAA 1002499 28 100.0 33 ............................ TATCCTGAATATTTGCCTATTAATGGGGAATGG 1002560 28 100.0 33 ............................ CGCATTGCAACGCTTGTGGAGTGATACGGCAAC 1002621 28 96.4 33 ..........................T. CTATTCAATTATCAAGCATAACTAGTTGCTAAA 1002682 27 71.4 0 ..........TAA.T...A....-..TA | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 33 GTGTTCTCCACGTAAGTGGAGGTGATCC # Left flank : GATCAAAAGAAGTTTGATGAACTAGGCGAAAAGCTGTTTATGAAGGGTGTTTTGCAAAACTTTGAGCAAAAGCATGGTCCAATTAAAGGCAGAATGATGGTTACCGAAGGTAAAATTCCACCTGAAATGCTTGTTAAGTTGCAACCAGAACTGATGAAAAATCCAAAATTTATTGTAGTTGAAGGTAGCTTTGACTTTTCAAACTATATGATCGGAATGGTTATTGGCCTTAACCCTGTTCGTCCACTAGCTAATGGCTGGTTGATTCCACAATTGAACCATCCTGGTATTAAGCCTACTAAGAATTGGCAAGAATTCTTTATGGAAAAAGTTATGGAGAAAACTGATGATAATGGAAAGATCGATTTGCCACTTTATAGTTGGATTTCTGATAAGAGTGATATAACTTTGAGCGATAAGGAAAAATAATTTGTGCTTAAAGTGAATAAAAATCTAGTTTTTGTTTTTAAAGAATGGCTTTGTTATAGGGATCTTTTAGT # Right flank : ATTTTAAAATTTAAAAATCTTAATAGAGGGAAAAATAATGAAAAAATTATCTAGGTATGCAAAAAATCTTTGGGGTAAGAAGGCCACTCAAGATGAAACTGAATTATGGTTACCTTTAATTGCACATATGATAGATACTAAGAATGTAATTAATTGGCTTTATAATCATTGGTTGAATCAAGGACAACGTAATCTATTTCTGCAAAACATGTCAGATATAGATGTACAAAAATTAGTTAGATTTTTAGGCTATATTCATGATATTGGTAAAGCAACACCAGCTTTTCAGACGAAGGAATCTTATAATCATGATCGTGATTTAGACTATGATTTGCTTGAGCATCTATTAAGAAATGGCTTTACTAATTTAGATCAATTGCATTTGGCGAATGCTCGTAGAACACCACATGCATTGGCTGGTGAAGCTATTCTTGAAAGAGAAGGACTAAATACTTCTGTAGGAGCAATTATTGGTGGTCATCATGGAAAACCTCAGAATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTAAGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1012143-1013268 **** Predicted by CRISPRDetect 2.4 *** >NC_017470.1 Lactobacillus amylovorus GRL1118, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1012143 28 100.0 33 ............................ CACCGTACACCATATTAAACCGTTAAGACTTGA 1012204 28 100.0 33 ............................ CGAAGACGGCACTTATACGATTGATCTTTGGAA 1012265 28 100.0 33 ............................ CATTTTTCCGTCGCATTTACGAAAACCATGTAA 1012326 28 100.0 33 ............................ TACATCGACAATAAAGACCCCAAGGCCCGTATT 1012387 28 100.0 33 ............................ TAACTATGTAAATCAAACGTTATTAACTCGTAA 1012448 28 100.0 33 ............................ CGATTGACCGCCAGTAACACGATTTGCCATTCT 1012509 28 100.0 33 ............................ TTAAACAATACATGCGAACAAATCATTTATTTT 1012570 28 100.0 33 ............................ TCAATCTATTTAATCTATACTCATAAGCTTTAC 1012631 28 100.0 33 ............................ TATAAAAAGAATGATCCAGACTACTATAGATGG 1012692 28 100.0 33 ............................ TGCTGAAGTATTTGACCAGTCTGTACCAACTTT 1012753 28 100.0 33 ............................ CATTCCAGACGGTGTCGAAGCCTTTAAACTGTC 1012814 28 100.0 33 ............................ CGCTGACCAGTACGAAACGGCGTTAAGAAGTCG 1012875 28 100.0 33 ............................ TTAGCACTAATTCGAGCCAGTAATCGAAGTTCT 1012936 28 100.0 33 ............................ ACAGCGCTACGAATTAGAGCAGAAACAAGAATT 1012997 28 100.0 33 ............................ TAAGAACTGAAAAAAAGAAAAAAAGCTTTAAAA 1013058 28 100.0 33 ............................ TTGCCAAACATACATAAAAGCAAATTTTTCGCG 1013119 28 100.0 33 ............................ TGAAACATCATCAGATAACTTTGCTAATTCGTC 1013180 28 100.0 33 ............................ TAACTCCCGCATAAATCTAACCGTAATAGAGCG 1013241 28 78.6 0 ....................A.CA.GTT | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.9 33 GTGTTCTCCACGTATGTGGAGGTGATCC # Left flank : AGTAGGAGTAAAATAATCTCTATTGGAGCGATTAAGGAAAACTTAAAAGGTGAAGAAGAACAATTTTATCGCTTGATAAAGATAAATGAGGCTATCCCAGAGAAAATTACTGAATTGACAGGATTAACTTCGAAGGTTTTAAATGAACGAGGTGTTACTTTAGAACAAGCTTTAAATGAATTTCGAAAGTTTGTTGGAAGTGAAATGATAGTTGGATACAATTTGTCATTTGACAATAATTTTTTATTGAAAGCATATTTAAGTATTGGACAAAGGGCTCTTGTAAATTCAATGAAAGATCTCATGGGTATAGTTAAAGAAAAAGATATTTTCCTAGATAATTATGACCTTGAAACTGTTTTAAAAGAATATGGGATAAAAAACGATAATAGACATAATGCATTAAGTGATGCTCGAGCCACTTTTAAATTGGCTAAAGAACTGAATAAAAAAGGTTATTTGCAAATTTAAGGATGTTGATATATCAAGGATCTTTTACT # Right flank : TTTTAATATGTCAAGTGAGCAACTAATCTACAGGATTTTGTCCTGTAGATTTTTTAATTTTTGTTTGACAATTAAAAGTTTCGAGAGTAAGATAATTAAAAGATTTTGAAAAGCAGATGAATCAATAAGATTTTATTACAGAGAATTGCTGTTAGATGAGAAGCATATAAATGAACTTGATGAACATGGGCTTGGATATCAGTGTTAGCGATATTTAGCTAACAACGGCGTTGTGAACCGTTATACGTCACAAACTATTATTGTAGTTAATGAGATCTGCTGTGTGAGCAGTAGATGAAGTAAAGGTGGTAACACGAAGCACTCGTCCTTTGGGATGAGTGCTTTTTTGCTTTTATTAAAAAATGAGAAGGAAGTGGGTAGAATGAGTTTAATTGAAGATGCTAAATCAGGAATTGTTTTAGATGGTGCAATGTCTGATGAATTGGAAAAACAAGGAGTTGAAACTGACAATAAGCTATGGACGGCAACTGCATTAGTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //