Array 1 14256-13204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000108.1 Sphaerospermopsis sp. FACHB-1094 contig108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 14255 36 100.0 36 .................................... AGGAGATGTTATTTCTACTGCCTTAGATGCTTTACA 14183 36 100.0 36 .................................... AAAACTCACCTTCAACGTTATGGTTGATTAGTTTAA 14111 36 100.0 38 .................................... AACACTGGATATCCTATTGAAGAAAGATCAGGAGTTTT 14037 36 100.0 36 .................................... AAGTGAATAATTCTCGTTTGTCGCCTGTGGGAACGA 13965 36 100.0 35 .................................... GCTGATATTGGTGTCGTTCCAGGAGTTTCATATTT 13894 36 100.0 34 .................................... CGCTCTACGGTGTAATAAACTGTTAGATTTATCA 13824 36 100.0 32 .................................... TCTATCAAGCAACGCTTCTTTTATGCGCTTCT 13756 36 100.0 35 .................................... TTATCGCGAATAACATCATATTGTTCTTGTGTTAA 13685 36 100.0 39 .................................... CTACGCTCGGCGTGCTTCTGCTCCACAGTAGGAGTTGCA 13610 36 100.0 35 .................................... TCATCTAGCGGGATGGTTTCGTATAACTCAGCGTG 13539 36 100.0 40 .................................... ACTTCGGGAGCAGTGGAATAGTAGTCGTTTTCATCTACAA 13463 36 100.0 40 .................................... TTTCTGGTTATTGCTTGCTATTTTGTGCTGCACGTAAGCA 13387 36 100.0 36 .................................... AGTCACCCAAGTTTCAATTCCTTGAGAGTTTAGTAG 13315 36 100.0 40 .................................... TTAGTAAAACGTACACTGGGTAAAAAGTCTAAAATGGTCC 13239 36 75.0 0 ..................T.....C.AC..AACC.A | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 98.3 37 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TTGCTGATGTTTATGTTATGTTTTTGTATGTGATTGCTTACGATATTCCTGATGATAAACGACGGAAAAAGATAGCTGATGTATTGGAAGGATATGGACAGCGTGTACAGTATTCTGTGTTTGAATGTCAGTTAAATACAGAGAAGTACAATGATTTACGTCGTCGGTTAAGGAAGATTGTTAAGTTAGAGGAGGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTCTTTCTCAGGTGGAAGCGTGGGGAGTGGGGATACCAGTGATTGAAACGCCGAGTTCGATTATTGTCTAGTTGTTAGGGAGGCGCGGCGTTAGCCGAAGGTCAGGTAAAATGGCTGAGATGTTGATTATTCCGTTGCGAGCTTCGGTTGCTTGCTGGGTAAGGGTTATGGGGATTTTTGAACGCTGTGGGAAGGCAATCTGTCCACCTTTTTTCGTGACCTTCGGAAACCGCCTCTGGACTCCTTGCACTGTCTGGGTTTAAAATGGAGGG # Right flank : TTACCGTAGGGGTTTAGCACTGCTGAACCCCTACTTAATAACATTTGAGTATCAACAAATCGGCATAAAAATACACAATTTGCAATTAATGTCAAAAAATAAACAATATTTTTAATTAAACTAAATAAACACCTCAAAGCCTTATACACAAAGGATTTCAAGGTGATTTATATTGAAAATTAAATATTGTCAATCAATAGACAAATACTAAATCCCGTCATTACAATATAAATATTGGCTACACAGGGGAATCACCGATGACAGCAGAATATTGGCGAGCTAAGATTTGGGGGTTACTGCATGACCCTATACTAAAGGCATTACATAACAATAGCGGACGGGGTAAAAATAGCTTCTATAAAAAGCTAAAAGTAATGCAGCCTTGGGTAGAAATTGACAAAACCCCCGAAGATTCCCGTGGTAAGGCATTAGCAAACATACTGTTAGCAGATCATGTTGCTTCAGCGAGTGATAGATCCGCCATTGGTGGGACTACAGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 7469-7795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000027.1 Sphaerospermopsis sp. FACHB-1094 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 7469 36 100.0 38 .................................... TCCCGGGATAAACTGGGCCAGGTTGTGGTCACAACCAC 7543 36 100.0 33 .................................... TGCTGACGCGCTTTGGCAATTCGCCATCCTTGG 7612 36 100.0 37 .................................... CCATCAACGGAGCCAACAGCGATGATTTGATTAAATA 7685 36 100.0 39 .................................... TCTGTCTCCTTGGTCGTATGCCAAATGCCGTGACTCTTA 7760 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 100.0 37 CTTTACAAATCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : CTTCGCCAAAATCAAAAATATCTTGATTTGTAGGTTGGGTTGAGGAACGAAACCCAACGAATACGTTGAGTTTACAGCAGTTTTCATGTATTTGTACCACATCCTTCTTGTTATCTTCCTTTCTTCCTTTGCGCCTTTGCGTCTTTGCGTGAGATTAAAAAATGTGGTTCATTTACCTGAAAATCGCTGTAAGTTGGGTTTCACTTCGTTCAACCCAACCTACGGGAAAATGGCAAAGGTATTGTCATCTGTCAAAAGCTTGACATTTATGGCGATGTGTTGTATATATAAAAAGTGTATCGAGAACATCGACACACGTCCCCCGAACCTTGAAAACCTAATAAATTCGTTGACCTGTGTCGATTGCTTTTGTAGCAAGGCTTTTGACTCTTGAATGAGTCAGTTTTTTCTCAATAAGCACTGATTTTTTCTCAATAAAAAAAGGTGTGTCGATTGGGGTATGTAAAACCCTTGCTCTGTAAGGTTTCTAGAAGTAAACT # Right flank : CAATTATTTACCAAAACCTAAACCAAAGCTTTGAGTAATGCTTGCAGTTTAAGCTGCACTTCAGCAAATTCTTTTTCAGGATCAGAACCGGCGACAATACCAGCACCTGCATAAAGTCTAGCGCGATCGCCATCAATTAAAGCTGAACGAATACCGACAATAAACTCACAATTTCCCTTTGCATCTACCCATCCCAAAGGTGCAGCATATAAACCCCTTTCAAATTTTTCATAACAGCGAATTTCTGCACAAGCAATATCTCTATCTGCACCGGCAACCGCTGGTGTAGGATGTAATTGGGCAACGATTTTTAAAGGGTGGACGTTAGCAGGTACTACCGCAGTAATGGGTGTCCATAAATGTTGAATATTAGATAATTGTCGCAGACGAGGGGCTAAAATTTGCGGAAATAAACCGAGTTGTGATAACCGTTGGGTGATAAAATCAATTACTAGGTTGTGTTCGTGTTTTTCTTTGGTACTATTAACTAAGTTGTTGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAATCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 26940-25758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000021.1 Sphaerospermopsis sp. FACHB-1094 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 26939 23 100.0 53 ....................... AATTGGTAAATTCATCAACGATAACCTGAACCTTATTGTGTTTCCACATAACT 26863 23 100.0 55 ....................... GAGAACCACCTCAAGAAAGAATTACTGTAGCGGGTCGCGGCGTTTCCACATAACT 26785 23 100.0 47 ....................... AAAATGCTCAACTCTCCCATCCCACTGCCCAACGTTTCCACATAACT 26715 23 100.0 50 ....................... TTGAATTTCAAAAAGCGCAAATAACCTTGCAAAATAGTTTCCACATAACT 26642 23 100.0 50 ....................... TAGAATGTACCGTTCCATCCTCCACTATAATCAGTTGTTTCCACATAACT 26569 23 100.0 49 ....................... GCACTATCACAAGTCATGAGTTTGTAGTCTAGTTTGTTTCCACATAACT 26497 23 100.0 50 ....................... ATTTTTGTTTGGCTATTTCTATAAACAGCCTCTCAAGTTTCCACATAACT 26424 23 100.0 50 ....................... TCTGTTTCCACATCCCACAGAGAGATAGTGCATTGTGTTTCCACATAACT 26351 23 100.0 48 ....................... GACCAGCTTCAGGCTGGTGATGGTCGCATCACCTGTTTCCACATAACT 26280 23 100.0 53 ....................... CAGTCTTGGCTTGTCTGTGTTAAGTGTGTAGTATTTTTGGTTTCCACATAACT 26204 23 100.0 51 ....................... ATTAAATGTTACTTGATCTGAATATCTTGCTGTGATTGTTTCCACATAACT 26130 23 100.0 56 ....................... AATCATATAGATTCCCGATCTGATTGTCCCAAAGGTTTCCACGTTTCCACATAACT 26051 23 100.0 52 ....................... GTCCCATACGTCAAAAATAGAGTGATATAAAATAATTGGTTTCCACATAACT 25976 23 100.0 48 ....................... AATCTTTCCACCATTCCAGCAAGTCTCCATCTATGTTTCCACATAACT 25905 23 100.0 47 ....................... TTATATCTGAACCTGTATGATTTTGTCACACTTGTTTCCACATAACT 25835 23 100.0 32 ....................... AAGTGCGATCGCCAAAAAAACCAATGAAAATA Deletion [25781] 25780 23 87.0 0 .......A..........A...G | ========== ====== ====== ====== ======================= ======================================================== ================== 17 23 99.2 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : AGGATTCGATTAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATTACTTATGGTTCGGAAACCCCTAGACAAGAGCAAGCTATAATCATATAATTGATACATGAGCTTGAATTTTTGGCAAACCGAAGCGGGGGCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTAAATACTTTCAGCTTTTTGTTAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCCGCCAAAATCACTCCTGGAATCTTCCCCCAGACTATGTTTCAGATGGCGGGGTCGCCAGGTTAAATTTGATGTTTCGTTTCCACATAACATTAAATATAACACATATTTATATATGTGTCAAGCATTGTCGCCAGGTTAAATTTGATGTTTCGTTTCCACATAACAAGTAGTGTAATTGTTTTGGCGAAATGAATAATTTTGTCGCCAGGTTAAATTTGATGTTTCGTTTCCACATAACT # Right flank : AGAGTAGAATCAATGATAATCACAAAATATAACTCAAAATAATGCCAAGAGCAGCAGCATCTAACAGACGAAAAGCCCCAGCCAAAAACACACCTTTAGAATGGGCAGAAAATACCGAATTAATTGGTTTAGTATTTGACTTAGAACCAGCTACTTCCGCATCTTTATATTCTCAATATACCATTGCCCTCCATGCTTGGTTTTTGGATCAAGTACGCCAAATTAACCCAACACTTTCAGCATATTTACATGATGGGGAATCAGAAAAACCCTTTAATATTTCTGCCTTAGAAGGTCAATTAGTTCCTACTGGTAAACAACTACAACTACAAGCAAATAACACCTATCATTGGTATGTTAACGTTTTTTCTCAGCCAGTAGTCCAGTTTTTAAAACAATGGTTAACCCAACTGCCATCAACCATAAATTTAAGAGATGCGGAATTACAAATCAAACAAATAAATATTGTTAACCCACCAACTACTTATCAGCAAATTTTA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 50233-51064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000021.1 Sphaerospermopsis sp. FACHB-1094 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 50233 23 100.0 49 ....................... ATAGTCTTGTCTTTAACAGACTGTTCTTGTGAATAGTTTCTGATTACCT 50305 23 100.0 50 ....................... TACTATAGCCAGCCTGTTTAAAGACAGTAGAGTGTCGTTTCTGATTACCT 50378 23 100.0 53 ....................... TTTCCTAAAGCTTGGTCAAAAGCCACCACCCACTTTTTGGTTTCTGATTACCT 50454 23 100.0 49 ....................... TTGCCACGGAGTATGCAGACTTAATCTGCATAAGAGTTTCTGATTACCT 50526 23 100.0 49 ....................... GAGTCTCACGAACGCCAAAAAGCTGAAGAACTTGGGTTTCTGATTACCT 50598 23 100.0 51 ....................... TTTATACCTGGGCGGATGCTACTAAAAATGGTACAAGGTTTCTGATTACCT 50672 23 100.0 49 ....................... AGTTATGCCAAACATTAAAAAACACCGTACTACAGGTTTCTGATTACCT 50744 23 100.0 54 ....................... TCCAGAGCCGTAATAGCTTCTGGGGAGAGGGATAATTCAAGTTTCTGATTACCT 50821 23 100.0 53 ....................... GTACATCTGTTTTATTTTTGACTGTCTAGCCATGTTTTGGTTTCTGATTACCT 50897 23 100.0 50 ....................... AGATCCGTGCTGGCAACACACGCGGTGTCGTCATTTGTTTCTGATTACCT 50970 23 100.0 49 ....................... ACGCTGGTGACAGCCCCTCAAACCCTTGTGCAGTAGTTTCTGATTACCT 51042 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ====================================================== ================== 12 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTTAGCGGATAAACTGCATAATGCTAGGTCTTTACTAGCAGATTGGCAACAAAGGGGAGATATAATTTGGCATCACTTTAGTTGTGGTAAGGAGAAAACTTTGTGGTTTTACCAATCATTGCTGGAGGTTTATCAACAGACTGGTTCTGATGTGATGACACAAGAATTAGAACGAGTGATCAAAGAACTATTTGAGTAATAATCTGTTTGAAATTGTAAATTTCAGCTTGATAATTCTTAACCGAATTTAGCTTGACAGGTAAAGCAACCAATTTTACCCTTAAATAAGGATAAATTTGGCAAACCGAAGCGGGGGCAAAAACCCCAGGGGGTCCGCCAAATCGACAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCGGTTCACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAATTCGTCTCTAGACTCCGGTTCTAGACTATGTTTCAAAGCGCCGGGGTTTCTGATTACCT # Right flank : CTCTCAAGTACAGATGGAATCTTACTCTATGGTGTAGACATCAAACCAGAGGCTATAGAAATTGCCAAGTTAAGGATGTGGTTATCGCTGGTGGTGGATATTCCTGATATTGAGGATGTAGAACCCCTGCCAAACCTTGACTATAAGTTAATGTGCGGTGATTCTCTGATTTCTACTATCAATGGTGAAAGGTTGATTCCTGACCCCACTAAAGAACAGCAGTTGATATTGGCAGTAACACCGATTCAACAAGCTATTCAACTTATTTTAGGCACTTTTAATTCGTAAATATATTTAGGTAAATCTATGAACATCTCGAAACAAATTATTGTTTTTCTAGTAACAACAATATTAGCCAATCAAATTCAATTCAATGAAACTTTTGCGAGGGAAAGCTCTAAAGATAGTGTCAAACCATCCAAAAAAGACGCAATTTCTATAATGCAAGGAATATGTGGGAAAAATAACATTAATAAATATAATCCAGAAGCTTGTGAAAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42504-45668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000034.1 Sphaerospermopsis sp. FACHB-1094 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================== ================== 42504 37 100.0 34 ..................................... ATGGACAACTCCTCTAGCAGCGCCTCGTTTACTG 42575 37 100.0 36 ..................................... TATACGTATATAGATAGCAAACTAGATAAGGATGTA 42648 37 100.0 39 ..................................... CTACCAATCATTGCAACCGCACTGATATATAAACATAAA 42724 37 100.0 40 ..................................... TACGAATTTTTGAGTATTGCTTTTTGATACGATCAATCAG 42801 37 100.0 34 ..................................... TTGCCTGCACCGCATCCAGCAACTGCTACAGGCA 42872 37 100.0 34 ..................................... ATTCAATCATCAATTACTACTCGCAAAAATTGGG 42943 37 100.0 36 ..................................... TAGAGAACCGTAATCATGTATTTGATCAGCTTCGCG 43016 37 100.0 34 ..................................... TACCAAGTGCAACTGCCATGAGTAGCCAAAGAAT 43087 37 100.0 36 ..................................... ATTGCTTACCCATATCAAGATGATGTATTCCCTGTT 43160 37 100.0 36 ..................................... TCGATTTTGCTAACTTCCCAATTTAACTCTAATTCT 43233 37 100.0 35 ..................................... CTCTAGAGAAGTAATTGCTATTGACGCTCAAATAG 43305 37 100.0 32 ..................................... TTTTCAATTGTGAAAACTTCTTTATCGGGCGC 43374 37 100.0 37 ..................................... AGAAGTTGATCGAGACAAGAAACTGAAAGCAATAGAA 43448 37 100.0 36 ..................................... TCCAAAAATAGATGACGACTTGCTGGAATGGTGGAA 43521 37 100.0 33 ..................................... TTCTAGCTTCAAAGAAGCCAAACTCGCCACAAA 43591 37 100.0 33 ..................................... TCTCGCACACCCCTAACTCTTCACTAACTGTTT 43661 37 100.0 36 ..................................... AAAAGACTTAGATTCTGATTCTGACCGAAACTTGTA 43734 37 100.0 37 ..................................... TCTATAAATTTTGTTTTCCATGCTTGTTTAGCATCTT 43808 37 100.0 34 ..................................... GATATTCGTGGCGGCTATTTTCTGCCTTTTTATC 43879 37 100.0 35 ..................................... GCATATTCATTGATCACTTTTAGCGCGAGAATTAT 43951 37 100.0 41 ..................................... AGGGGGAAAATAGCCCTATGCGGGGATTGCATAGCCCTTAT 44029 37 100.0 35 ..................................... TTTGTATCTTGTCTGCACATATAGGCTTTTATAGT 44101 37 100.0 39 ..................................... GAATTTTGCAAAAAGCGGTCGCACTTGATTGGTAGTTAG 44177 37 100.0 33 ..................................... AGCAGTAGAGATTGCTCTCCCAACTTTACCCAA 44247 37 100.0 35 ..................................... ACTACGGACAAAATGCCGTAATCGGTGGAAATCCT 44319 37 100.0 38 ..................................... ATTTAATGTAGTTTGTGAGGTTTCCGCAAAAATTTCTG 44394 37 100.0 31 ..................................... CCAAAACTTCCCCAAAGTCTTTAATAAAATA 44462 37 100.0 46 ..................................... TCATTTGTGAAATGACCGGCTAATTTAGCAGCGTGTAACATTTTAG 44545 37 100.0 38 ..................................... TAGGAACGATTAAAAACCGTGTCTTGTTACCTTTACCA 44620 37 100.0 34 ..................................... TTCTTTAAGATGAATATCTGCTAATTGTTTAGCT 44691 37 100.0 34 ..................................... CTTTTATGGTCATCTTCCTTCTGTTTCAAATCCA 44762 37 100.0 35 ..................................... TAACTTGGAGGCGATCGCGTCGGAACACTCTCTTT 44834 37 100.0 34 ..................................... AGCGACATTTCCACCGACTTGCCGGATACTTTCT 44905 37 100.0 33 ..................................... AATTTCCCCCGCAAGTTTTATGTCTTGTCTTTC 44975 37 100.0 34 ..................................... TTACCAGAGCTACTTGTGATTCTAAACTTTTAGC 45046 37 100.0 41 ..................................... GCTTGTTGACCACGAAAAATGGCTACAGGATGCTGTCGGAC 45124 37 100.0 35 ..................................... CCTGAAGGAACGGCAATTATAACTCTAGAGGGGAA 45196 37 100.0 40 ..................................... TTTCTGATGACTTTCTAATTTTTTGATTGTCGTCCAGTGA 45273 37 100.0 34 ..................................... TAGTTTTTCTGTGGGATTAGATCCGGGCGTGCGT 45344 37 100.0 38 ..................................... ACAATGTAGGTCAGCTAATTAAAACTCCTAAAATTAAA 45419 37 100.0 45 ..................................... CTCTCAAGTTGAGGACGCGGTAACTTCCCGCATTATGGCACGGTG 45501 37 83.8 94 G..AA......AC.......................A ATTATTTTAACAGTGGTGGTTGTGGTGGCGGTTGCAGTTAAAATTACTCATAATCCTGTAAATCCTAAAATCCTGGACATCCTGATTCAGACAA 45632 37 83.8 0 G...A........A..A.......G...A........ | ========== ====== ====== ====== ===================================== ============================================================================================== ================== 43 37 99.2 38 ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAGCGGCGGACTAAAATTCACAATATCCTCAAGTCTTATGGCCAATGGGTACAGTATAGTATTTTTGAATGTGAATTGACTGATACTCAGTATGCCAAACTGCGATCGCGTCTCCATAAGCTGATCAAGGCTGATACTGACAGCATCCGTTTCTATTTCCTTTGTGCTTGCTGTCACGGTAAGATAGAAAGAATCGGTGGTGAGCAACCCCGCGATCACACTGTTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAAATTTTAGGTGAACAAAAAATGGCTGAAATTATCTCTATACAAGGCTTTCATGATTTTTATCCAACTCACCCACCCGCGCACTTTACACAGCAAGAGTTTCAGCCATTTTACCCCTTGACACAATTTCTGAAATCGACTATTATTATCTCATTCGCGCAATTGAACCTTGAAAACTACATATATATAGGCTTTCAGCCGCCCGCT # Right flank : CCTAAAAATCTCTATTTTTGTTTTCAGAAAACACTCTTAAATACTGTCACCTGTCACCTGTCACCTGTCACCTGTCACCTGTCACCTCAAAAATCCCATTTCCTGTAAACCCTGACGCAACCTTTTAGCCTCTTGCGGATTATCTTTTTCATGGAGAGCGATCGCATATTCAAAAGCTGCCAAACTATTCTTCACATCACCCACTCTCAACAACACCACCCCTAAATTTTGATAAGCTTCCGCATAATCAGGATTTAAAAAAACCGCATGATTATAAGCATCAATCGCCTCAACAAACAAACCCATTGCTTTAAACACCATCCCCAAATTATAATACCCAATCACAAAACGATCATCAATTTTCAAAGCAGTTTCATAAGCATTTTTCGCCCCTGGCAAATCTCCCATCGCTTTCAACAAATTACCCAAATTATTATATCCTCCCAATTTCAACAAAGGATAAATAGGTAATTTAACCGCCGCTTGATAATAAGAAATCG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 77489-78660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000003.1 Sphaerospermopsis sp. FACHB-1094 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================= ================== 77489 36 100.0 45 .................................... TGTTGAGTTAGCCGATATCTCCAATAATGGCGAACAAAATTACAT 77570 36 100.0 38 .................................... GAAATAATTATTGATGGATTGTACCAATACAGTGCTGC 77644 36 100.0 34 .................................... TACTGAGCGCCCCATACAAACAGACCATCAAAAA 77714 36 100.0 125 .................................... CTACCAGAGCCCCTTGAGACAAGGGCAACTTCAAACCGCCTTGGCAGTAAGAAGTCAGCGCACAGCTATCTTGCGATAACCGCGTACTCTTGTAGGGTAGACCTAAAGCCTTCCACTAACAGAAA 77875 36 100.0 35 .................................... ACAACGCGAAGGGAGGAAAAGTGCAAAACGTACCC 77946 36 100.0 48 .................................... TGTCAGGAAGAGGAGGCAAGAAACCTAATCAGGTCTTACTCCTACAAA 78030 36 100.0 38 .................................... ACTTCCCTCTACAAAAGTGATTAAGCTGTTCGCTTATG 78104 36 100.0 38 .................................... GTGAATCTAGCTCCAAAACCATCTCAGGAATGAATCCA 78178 36 100.0 39 .................................... GAACAATAAGCTTGAAACTCTTGTAAAGTCAACAAAAAA 78253 36 100.0 40 .................................... GACAAGTGGTTGCTGGTCTCCTAGAGACAGCTACATAGTT 78329 36 100.0 35 .................................... TAAGGAGCAAATTTACAATGGCTGTATTAATTCTT 78400 36 100.0 37 .................................... GAATTTTTGATAGGTAAGCCCGTCGCAAGTATCCGAT 78473 36 100.0 37 .................................... CATTTCTCTGTTGCTGCTTCCTCTTTTTCTAAATCAT 78546 36 100.0 43 .................................... CACGATTCCCGCGTTAGCCCGACAACCCCACCCGCAAGAGGGT 78625 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================================================================= ================== 15 36 100.0 45 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Left flank : CTTTTATTAGATGATGTTTTAGCAGAATTAGATTTATCCCGTCAAAATCAATTACTTGATGCTATTCAAGATCGGTTTCAGACTTTAATTACTACTACTCATTTGGGTGCTTTTGACTCTCAATGGTTAAAATCTTCACAAGTTCTCTTTGTCAAATCAGGAGAAATAGAGTTTCCTGAAAAAGTCTTTTCGTGAGGGAGTTAGGAGTTCCAGAAATTTTTTTATTTTGAAATTGTCTAAATAGGGGTTGCTGAGAAAGTCTTTCCGTGAGGGCATAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGGAGATTGGAAAATTTCTTTGCCATCTCTTGAAATCCCAAAAAATGCACACTTTTTCCGGTATACCCTTCAAAACCCTTGCACTAATTTCTGTGTTTATCAGCCTCTAACCTTTGATATATCAAGGTTTTAGGTTTATTCAGCAAACCCTAAATATCAACAAGGTGCAAGCTTTTTTAGCTTTAC # Right flank : CCCCTCCATTTTAAACCCTTACCCAGTAAAGTGTCCAGAGGCAGTTTCCGAAGGTCAGGAAAAAAAGTGGTGAAACAACTAACCAACAGCGGTAAAAAATCCCTGAAACCGTTACCCAGTAAGCGACCGAAGTTCGCAACGAAAAAATCAATATTTCAGCCATTTTACCTGACCTTCGGAAAAACTACACAATAATCAAGGAGTCAGAAGTTCCAGGAGTTCCTCACTGACTACTTCAAACCTTTGATTTATCAAGGTTTTAGTTTTATTCAGCAACCCCTATTGAGCTAAAAACCGTATTATATCTTACTTGAATTAGTAATGTAATTGTAAAAACTCAATTTTTAATAATATTTATTTATATAAGATATTTATATTTATTGCTTTGAAATAGTGTATTAAAGAAATAATCAAAAATGTAGCGTTTGTATCTTACCATAAAAACAGTAGGTCGATAATTGACAAATAATACGTAAAACTTGCACAAATGACACCTAACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 9350-11265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000039.1 Sphaerospermopsis sp. FACHB-1094 contig39, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================================================================================================== ================== 9350 36 100.0 35 .................................... GCGCGTCCTGATCTTCCAGCGTGGATGGCTGGGGT 9421 36 100.0 35 .................................... GGCACATTTGAGCCGAAAGATTCTCTCGTAATTCA 9492 36 100.0 164 .................................... TCTGCAGAGAGCTTGGTAGGCTGGGCTGCAAACCCGGCCATTTTTTGCTTGCCGACGGCGGCGTTTAGCTGCTGCCAAGCGATGTTGAGCCTTGCGGGAAGCTTTAGCAATTTTGTTTCTCATAGACACAGAAGGAGCGACCTTCTTAACGCTCTTAATTACTA 9692 36 100.0 38 .................................... CTTCATAGGTATTGACTGTTAGTAAACCACTAAGGACA 9766 36 100.0 38 .................................... TGCGTCTTGCCGCGCCAACTTTAATCTGTAAATATAAC 9840 36 100.0 41 .................................... TGTCTTTGCTAAACTTAGCTATTGAAGCAGGAGTTCCTCAA 9917 36 100.0 36 .................................... TTGAGCAGCGCATTGCTGATCTTGAGCAGGAAGAAC 9989 36 100.0 39 .................................... TTTCATGGTCTTCAGGAAATATTCTCAAGTAGAAAATAC 10064 36 100.0 43 .................................... GAGAATTGCTGCTCTAAAACAAGAGGAGCAAGAAAACCTCCAA 10143 36 100.0 47 .................................... GTCCCCATCTCTGATATGAGTGCTAGTAATTTTTTGCTACTAGCTTG 10226 36 100.0 38 .................................... GAGTGCCCCTACGGCACGACTTAGGCGACCACGTAGCT 10300 36 100.0 40 .................................... AAGAAATTCAAGAGTCTATTAACAAAGCAAATCTTGCTAA 10376 36 100.0 39 .................................... AGAGCTTGTTGTTGGTGTACCAGTAAGAGTTACCCAAAA 10451 36 100.0 39 .................................... GACATGATTGAACGGATTTATAAAAGTAGTTCACCTGAC 10526 36 100.0 34 .................................... TTACACAAGGATGCTGATCACGCGCCACTATGTT 10596 36 100.0 72 .................................... TTGCGGGTAGGCTTGCATCCCTGGTTCAATGCCAGCCTGCTCCAGCCCCTGCTCCAGCCCCTGCTCCAGCTC 10704 36 100.0 39 .................................... ACAAGAATTAATCAACTATATAAGCTTTTGTGAAGGCTT 10779 36 100.0 39 .................................... TCAGTTTCTATAGAGGATGTACTCAACATCTCTTTAGGA 10854 36 100.0 44 .................................... GGGCTCAGGAGTGGTTTCTACCCACTCCTTTAGGTAGTGATACA 10934 36 100.0 36 .................................... TAAGCCGGGCTGAATTTCCACACCCAAAGCTTCACA 11006 36 100.0 38 .................................... GCGGTGGCACCCCTGCCACTGCAAGAGGCTTGGTTAAA 11080 36 100.0 39 .................................... AAGAATACTCTTCCCTAGCTCTCCGCACCTTGTCTCCTT 11155 36 100.0 39 .................................... ACAACAAATAGAAGAACGTATTTCCTTACCTGCTCAGGT 11230 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================================================================================================== ================== 24 36 100.0 46 GTTTCCATTAATTCCACTTCTTGTTAAGGAAGCGGT # Left flank : TTTTAGCACGGGAAATAGCTAAACCATTATCAATAGGCGCAATTAAACTAGCAATAGAACCAATAGCAAAACCTCTTTCCATTGCTTCTTCTTCTGTAGAGGAAGATAATCCAATTATTGCACCTGTTACACCAAGACTCAAACCCAGCCACAACAGTGCTTTCCAACGTCGTGTGTAACAATATCCAGCAAGGGGAATCAATAAAGATAATAAAACTGCAATGGTTATATTTAAACGAGAAAGCCGCACAATTTTATCTGCTTTTTTCCGTTCTTCTTGTTCATTAATTGCATCTAAAGATTGACGCAACAGTTTTTTATTGTCATTATTTTCTCCCATAACAGATATTCCTTCACCCTGGCGGTAGTTTTGTTTACATCTCCTGTAACAACATACTCGCAATTTTCTCGTGATTCAATGCTTCTCATGCGAATGAGGAAAATCTTCATTTAAGCAGTAGATCCCGGACTTCTCAAAGAAGTCCGGGATCTGATAGTGG # Right flank : TAGCCACCATTATAAACCCTTACCCTGCCTACTGTCTAGAGGCAATTTTCGGCCGGGTCTAAAAAAAGAGTCAACCAGCACCATAAACCATGATGTTAAAACACCTGAAACCCTTACCCAGCAAGGGATCGGCAGGGTCAACGAAAGAATCAACATTTGCACCCCCTCCCCTACCCGGCCGCAAAAAAACCATTACTAACAAAAAAATTCCTTATTCGCATGAAACCCCCTTACATTACCTGGCAATTAGGTCTATTTTAAAAAAATCATCAACTCACAAAAAATATGTACATTTCTCATCGTGCGGCTTTAGTCAGAAATTTAGGAGTCGCTATATTTAATGGGTCAATTACACTTATAATCCTATTAATTGCCCCATTAGGATTAGCAGCAGTTATTGTCAATACATTATTAGTTACCTTGGCTAGTTTTATAAATGCTACAGCATCTGATAAAATTGTGGTTTTTTTACAACCAACTCACATCAAAAATATGATAGC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTTGTTAAGGAAGCGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 11659-12722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000113.1 Sphaerospermopsis sp. FACHB-1094 contig113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 11659 37 100.0 35 ..................................... ATTTTGATAATCCCAGTGCAGAAGAAGTAAACAAG 11731 37 100.0 41 ..................................... GATTTTTTTCATCATAAATCGCTATAATCCTTACACTGTAG 11809 37 100.0 34 ..................................... GACGATTTCCTTAATACCTAATAACTCGATAATT 11880 37 100.0 35 ..................................... TTAAAAGAATTTTACCCATTCAAGTATATGCCAAA 11952 37 100.0 38 ..................................... TTTTTGGTGTACTAAAATACCAAGATAGCGCCATTTAA 12027 37 100.0 35 ..................................... CTAATGGTAAAGATTTGAACTTTTTGTAAAACCCG 12099 37 100.0 35 ..................................... TTTGGTGGTGGTATTGAATTGTGCAACCATTGTCG 12171 37 100.0 35 ..................................... TTATAATCCCCACAAGTGGCTTATTTCCTAAGCTA 12243 37 100.0 34 ..................................... TAAAACCTAGCATGGCTTTGCAGTCAAGCTCGCC 12314 37 100.0 35 ..................................... ATTAGTGCTAATAGTGGGTATTTTGTCTATAAATC 12386 37 100.0 36 ..................................... ACTTTTCAAAGTTTCAATTTCTGCCAATAATTTAGA 12459 37 100.0 39 ..................................... TAATGCAACTTCACCGGAGTTTTTAATGTGCTGCCCCAC 12535 37 100.0 40 ..................................... TAAAATCTTCCCACATCCCATATTTTATGCGGAAAGTCCC 12612 37 100.0 38 ..................................... TGGAGATAGTACCCAAAATCAATCTATAAAATTGCAAA 12687 36 70.3 0 ..........G.......TGTG..G.-A...AC..T. | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 98.0 36 GTTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Left flank : TCAATGGTTGCCTTGGATGAAGATGGGTGAACAACCAGGACAACTTATATATAGTGCTATTGGTGGCAAGGTGGGCGGTTTTACAGAGTTACCCCCACTGTTACAAGCGGAAATTAATAACCGTGTGCCTTTGTATAAGCAAGCGCCGAATGCTTTTATGGAAGGGGAAGATATGACTTCTTGGTTATATTTTCAGAAGCATTTTTCTGATTATTTGGCTGGGGAAGTTTTTCCTTTACCACCAGCGGAGGAAGGTTAGTTTGTAGCCCGAAATGCGCGGATGGGTGGGTGTAAATTTTGAGGTGTTGAAAAAAATGCCTGGATCTCTCTCTATGCAAGGATTGGGAGTTATTTGTGTAGAACAACCACCCGCGCACCTTACCCTGTCTTGGTTTCAACGTTTTTCCCTCTTGACGCAATTCCTGAAATGGACTATCATTAGAACATCCGCGCAACCGAATCTTGAAAACTACATATATCTAGGCTTCCAGGATGCCGCT # Right flank : CAAGCAACTCCATAGTCTGTATATTCCCGCATTTCAGGAGCTTGAAAACCTAAAATAATATCTTCCTTTGCAACTCCTCGCGCTACAAGTTCTTCAGCCACCATCATTTCCGTCATATTTTGCTCAATCCAGATTTTTCCCTCTTTAATATCCAAATGTAAAACACAACCATAGACACGCCGATGGCCATCCCATCCAACATTCATGACTTGGTAATGATCTTGTTTAGTATCAAAAACAGTGTAACAATCAATCTTACCATTGGCTATTGGGATGGCAGCATAAGCAGTCAACAACGACTGAATGATATTGCGATAAGATGCTATGGTATCCATTGTAAAATTACCTCTTCAATTGGGTCATAAATAATTTGTTTAATCTGATATCTCTCTATTGAAATTTGGGCAAATTCCCGCTTAAAAAAAGATTCATAAACACCTATTGGTACCTCTGGGAAGTATCTTAGTCCAAAGGTTAGATAAATTGAAACTAGCAAAAGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 6713-6905 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000063.1 Sphaerospermopsis sp. FACHB-1094 contig63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 6713 37 100.0 35 ..................................... TTAATTTGTAACCAGAGGGGATCTGGGTATTCAAG 6785 37 100.0 47 ..................................... CATTTATTTTCTTATCCATTTGTGGCGCTTTCTCAACGCCAGGAATG 6869 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== =============================================== ================== 3 37 99.1 42 CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAACT # Left flank : GAAGCATTTGGGCGATAATTTGACGGAAAAATCAGACATCTAGATATCCCAAATGCTTCGACCTGCCCCCATAAATAAGCCATAATTTCTTTTCTGGAGAAGTCTAATTGATAAATTAAACGCAGATGGACGCAGATAAACGCAGATAATTTTGTACTTCTTGAGATGAGGAAATGCTATCTCAGGATGGAAAGTGGGATTTTTTGGGTGTTGAATGGGTGTTGAAGTAGCTAATGTTTAAGAAATGATAAGTAATATTGTCAATTTCAGGTGAGATGGGTTACTTTAACAAAAATGGTAAAAATATTTCGACACCACAAGCCCGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTGGATCGTTTACAGGATCAGCGTTTCCGGTTTTACAATGCCTTACTTATTGAGAATTTTTTGGCACTTATTGAGAATCAAAAAAGTGGTGTCGAAATGGGGATCTGAAACCCTTGCTCTGTAAGGCTTCCAAAAGTGAACT # Right flank : ACTGCTAAACTAACTATTATTACAACCGGAAAATGCTAAGATTAAGAGTAATCTAGTTCAAGCTAACTTAAACACTATGACTGATATTAATATCACTCTATCTGAAGCCCTAAAAAGTTTTATTGATGAAGAAATTGCCGAAGGTAATTATAATTCAGCGAGTGAATATTTACAACAATTAATTATTCAAGAAGCAAGACGGAAAAGTAAAGGAAATTTAGAAGATTCTGTAATAAAGTATCAAGAATTGGAAAGTGTTTTAGATGAATTAGCTGATGGTTTTGCAGCGTGTGTTGGTGCAAACGCACCTATTTTATCTGATTATGCTGTTAGTCGTGAAAGTATTTATGAAGACCATTATTAAAAATAGAAAATGGAATATTTAGTAGAACCTAAATTCAACACTTTCATAAATTTTACTCCTTAATTTTAAAGACTATTACAAAAATAAAAACATCCCACTGATCTTCCTTCGCGTGAAATAACAAACTAATCACAAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 16312-15541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000072.1 Sphaerospermopsis sp. FACHB-1094 contig72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 16311 37 100.0 36 ..................................... GATAAATTAGGAACTAAAAAATATGCCTAGAGCCGT 16238 37 100.0 35 ..................................... ATCTATCCCCTGATCAATTAGCAATTGCTTGTAAT 16166 37 100.0 38 ..................................... CTAGACAAACACAACTTTATTCTTAGAACAGGTACACG 16091 37 100.0 34 ..................................... TCAATTTCATAGCCTTTTTCTGCCATACGGGCTA 16020 37 100.0 36 ..................................... TTGTTTCTACTAGCGATAATTATGATATTCTCGCAA 15947 37 100.0 36 ..................................... TTACCTGCACCGCATCCAGCAACTGCTACAGGCATA 15874 37 100.0 35 ..................................... TTATTTTATTAACTAAATCCCAAGTATTGCGGGAT 15802 37 100.0 40 ..................................... TGTATAGTCTAGCTGCTGCTGATACTGCTGCTAACGGAAC 15725 37 100.0 38 ..................................... AAAAATACTATGCACAAGTACACAATGGTTAACTAGTA 15650 37 100.0 36 ..................................... CCCCTTATTTTCTGACTCCAGAACAGCAAAAAGTAG 15577 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 100.0 36 GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Left flank : CTGGTTGTGTGAATGAACGGGATTTAGCTTTATTTTGGCAAGCTTTGATTAATGCTTGGGAGTTTGATCGTTCTTCAGCACGGGGTTTTATGGCTTGTCGTGGTTTGTATGTTTTTACTCATGCCAGTAAATATGGTAATGCTCCCGTTCATGAGTTATTTGATAAACTGCAAATTAAGTCTAATGTTGATGTACCCCGCAGTTTTGCTGATTATCAGGTTGACTTGGATGAGGTGTTACCTGATGGTGTGACTTTGACAAAGTTGGTTTGAAAATGCGCGGATGGGTGGGTGTTAAGTCGGAGTGATTATGACTAAGCTGGAAACTCTTACACTGTCTAGTTTTTATCCGTTGGGTGTTCTCAACCACCCGCGCACCTTACGCTGTAAGGGTTTCGGCGTTTTTCGCTCTTGTGCTATTCTCTGGGATCGGGTATTATTTTGGCATCCGCGCAAATCGTTGTGGAAATGTCCTATTTCTAAGGGTTTGCGCGATCGGCA # Right flank : ATTAAGGATTGAAACTAAACTAAAAGATAATGATTTTCACAACAAGAAATTACACAGTAATTGCAGATTGACATGACAAAAACCCATACCACTCATCTAAACCCACACCAGTAATAGCAGAAACCTGAAAAATTTGTATTTTTGGGTTTACCTGTTTTGCATATTCAATACATTTTTCTACATCAAACTGCAAATAGGGTAACAAATCAATTTTTGTAATAATCATAATGTCACTAGCGCGGAAAATATGAGGGTATTTAATTGGTTTATCCTCTCCTTCCGTCACCGACAAAATTACAACCTTAGCCTGTTCACCTAAATCAAATAAAGCCGGACAAACTAAATTACCCACATTTTCAATCATCACCACAGAATTTAATGGGGGGTTAAGTTCCTGTAAACCCTTTTCTATCATCGAAGCATCTAAATGACAGCCTGTTCCGGTGTTAATTTGCACCACTTTACAGCCTGTAGATTTAATTCTTTCTGCATCATTAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 52699-52290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000012.1 Sphaerospermopsis sp. FACHB-1094 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 52698 37 100.0 35 ..................................... GATACTGATCCTCTAAGATAAGAACCCGGCATTTA 52626 37 100.0 35 ..................................... AGCAGTCTGACCCTACGCAACTATTAAAAGACATA 52554 37 100.0 35 ..................................... TAGCGTAAGCAGTCGTCTATGGGTGATAGTTTCAT 52482 37 100.0 45 ..................................... TCAATATGTCGAGTCTTTATTTAAACAGAACGTACTGGTACTCGA 52400 37 100.0 37 ..................................... ATCACTAATAACACCTATTTGGGCATTGATAGAGATA 52326 37 89.2 0 ....................T.CT.A........... | ========== ====== ====== ====== ===================================== ============================================= ================== 6 37 98.2 38 GTTTCTAGAAGTTCTGAGGACTGATTGTTGTTTAAAC # Left flank : GTTTATTTGAAAAATTGCAGCAAGCTGATGTGAATGCTGCCAGAAATCATAAACAACATGGAGGCTTTGAAGTGGGAGAGGTGAAATATAATTTAACAAAATTACAGTATCAAAAACCCAAGAGATTTAAAAAGAAAAAGTTGACAAAGTAATCTATTTCAATTATTATTAGATTACCGCAGTTTGGGCGGGTGATTAAGTGATTAATCTATGGCTTGTAAGTTTTGATCTTTGGATTTAAACCCAGAAGCAAGGGGTGTGGTGACTATCCCCGTAGACTGTCCAGAAATATGGCAGGAACAACTTAATTTTTGGCAAACCACAAGCTCGGCTAAAAATGCCGGGGATCTGCCAAAACCTCAGAACCTAGACAATTTAAGGGTTTCAGCACTTCAAGCCTCAGATTTTAAATGCTCTTTAGCGGCTGAAATGGACTTTTTGATCAGGTCCGCCAAATATGGCTCTGAAACTTAGGCTAATTAAGGATCTCAATGGGCGGG # Right flank : CATCTCTCTAAAAAACCCTCTTCTTCCTCTCTTCCTTCGTTTCTTCGTGTCTTCGTGGTTCAATAAAAAATCATCCTGAAAATCCTAAAATCCTGGACATCCTGATTCAGACAAAAAAAGAGGCAGAGCCTCAAAAAAGCATTCCTAGTCAGAGACTAGGAACGAGATAAACGAGATGAAAACTAACCCAACTTAATAGTTTTCGTAATCACCGATAAACTTTCCTCAAACAAAGCCTCACGCCCCCAACGTTGCACCTGCTGACTTAATAAATATTCCGGCTTTTGTTCAGCAAGAGAACTAACTTGTTGAAATAAACCAGCAGATTGAGCGCCACCTTGAGTTTCCATCCGCATACAACCGCCGGTTTCAGAACAAATTACCGTACCACAATTAGCTTGAGGATTAGTAGAACTCAAACGCAAAGCAATCAAATCACCAACAATTTCGCCAATATCAGCAACAGGAACACCTGCTAACTCTGCATTAATTTGTCTTTG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGAAGTTCTGAGGACTGATTGTTGTTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 8600-7307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000133.1 Sphaerospermopsis sp. FACHB-1094 contig133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 8599 23 100.0 52 ....................... CAAATTAGAAGCTATTAAACAACAATTCTCAGAGTTAGGTTTCTAATTACCT 8524 23 100.0 52 ....................... GTTGCATTTCTTCATTTTGGCAAATTTAGATTTTCTCTGTTTCTAATTACCT 8449 23 100.0 49 ....................... TGCCCAGCCATTAAAGCTGAGTTCGTTTCTACCAGGTTTCTAATTACCT 8377 23 100.0 51 ....................... GCATGAGAGCCACCGTCATAAATGCCATTGTCAAAACGTTTCTAATTACCT 8303 23 100.0 50 ....................... TCTAACTCTCTACAGAAGAAGTTAAACAAACCTGTTGTTTCTAATTACCT 8230 23 100.0 53 ....................... ATAATATGCTCAAGCTGTTCCATGTAGCTAACAGCCTTAGTTTCTAATTACCT 8154 23 100.0 49 ....................... CGGCTACCGCAGATTAGAGAAGCTGGCTACTTCTCGTTTCTAATTACCT 8082 23 100.0 49 ....................... AACCTTCTGATATTCCCGTAACAGCACACCATTAAGTTTCTAATTACCT 8010 23 100.0 56 ....................... GCGAAAAAGTCACCAAGGGAAAACCCTAAAACGCCCTCTCTGGTTTCTAATTACCT 7931 23 100.0 59 ....................... GACAAATCCTCTGGCTTATCCACTAGGTTATAGGTATCGTCGCAGGTTTCTAATTACCT 7849 23 100.0 54 ....................... GCCAATAGCAGCCAAATCATAAAGACTGGACTCCATGACAGTTTCTAATTACCT 7772 23 100.0 51 ....................... AATACCATTTAGGTATACGGATACCTTTTCATCCCGGGTTTCTAATTACCT 7698 23 100.0 49 ....................... TGTATATTTTATTTGCTTTAGATTTCCTCTCTCTCGTTTCTAATTACCT 7626 23 100.0 50 ....................... AATGCGACATAACGATAAAAATGTTGCATTCGGTTTGTTTCTAATTACCT 7553 23 100.0 51 ....................... ATCAGCTTTTTTACTCCAATTTTTATCATATTTAAAAGTTTCTAATTACCT 7479 23 95.7 50 ........G.............. CAGATGATCACTTTTCTTATAGGGAACGGCTAAAAAGTTTCTAATTACCT 7406 23 100.0 54 ....................... TGGCTATAGTTTCCACTGATTGAATCCTAAAAGGTTTTAGGTTTCAAACTACCA 7329 23 82.6 0 .C...........A..A.A.... | ========== ====== ====== ====== ======================= =========================================================== ================== 18 23 98.8 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : TGCCCATACTAGAGGAGTATTTTTAGATGGGGTTTTGCGTTTGCTGGATGTAGCTGTTCTGGGCATGATCTTGAGGCTACATAATGTGATTTTCTGTATTTTACTATGTTTTGGTCCCCTGGTGGGGATGGGGTGAGGAGTGGGGAGTCAGGAGTCAGGAGATCAAGGAGTCAGGAGATCAAGGAGTCAGGAGTCGGGACTTGAATATAAAATAGAAAGAGTGCAGTAATTATTTGTAACAAAAAAACTCTTGACAAGTAGGTTGCTAAATTTTACTCTTGGATCAAGATAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : GTTTAAATGAATCAAATTGAAACAGATATCAATACTGCTCGGTTAAGGATTTTCGTAGGTTGGGTTGAACAAAGTGAAACCTAACAAACCCTTGTCAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCGATTTTATTTTTTTGTGCTTAACCGACAAGTATTGAAACAGATATTACAAAGATAATTAAAACCCAAAGATTAAGTTTTTCAGAACTTTTTTAAATTTAAGGCTGCATAGCTATAAAGTAATAGAAGTAAATTAATTTAACCAGTAATTTACAAGATAAAAATCGAGCAATTACAACTTGTGTGCAGTAATTTAACTGGTAATTTTTTTGGTTCTACCGTACTTGTTATGCTAAATTACCAGTCTGAAAGAGGGAACTCTTAACAGGGAACTCTTAACAGGGTAAAGAGGCAATTTTTGTAAAAATATCCAATATTTGTAACTTATGTCTTATGTATATTAAGCCTTCCGCAGTTTTTTGAGATTGATTT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2039-3681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000152.1 Sphaerospermopsis sp. FACHB-1094 contig152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2039 37 100.0 33 ..................................... TACAGTTTGTAGACAAAAGTAAACAAATAGGCT 2109 37 100.0 36 ..................................... TAATTATTTCCTATTTCTCAATGTCCCAGTTTTCAC 2182 37 100.0 38 ..................................... TTCAGCAATAGTCCCAGACTCTACCAAATACTTGATAA 2257 37 100.0 35 ..................................... CCTTGTTGCTTGTGGTAATTCATTAGCCCTACAAG 2329 37 100.0 33 ..................................... GGGATAAATCAGCATCTGCGACCGTAATGCGAT 2399 37 100.0 33 ..................................... AAAATATGCACGATAATCTGTCGCTAAAGCAAT 2469 37 100.0 35 ..................................... GGCTTTTTCGCGATGGTTTTGATAGCGGTTTTGAT 2541 37 100.0 35 ..................................... GTGCAAAAGTGCAAGATGTCCAGGTTTTCCCGCTT 2613 37 100.0 39 ..................................... CCATAGCTTAAAAGCTATTTCCTTTTCTGGGCTTGTGGT 2689 37 100.0 33 ..................................... GATAAAATTCGATTCAATAGCCAAATAACTAAA 2759 37 100.0 35 ..................................... TTATTTCGGCAATAGCCGCATTTATTTCCAGAAGC 2831 37 100.0 44 ..................................... CTTCAACGCTTTTGATATCCTTGAGTTGTTCGAGTCCTGCGGAA 2912 37 100.0 34 ..................................... AAATAAGCAAAACCCCACCCGGAATAATTCGAGT 2983 37 100.0 36 ..................................... ATACAATCCCCTTCATCCGCTGTATACCCTTCCTTA 3056 37 100.0 38 ..................................... CCATGATTTTGAATAATTAATGCACCCTGACTAGAAAC 3131 37 97.3 34 C.................................... CCAACTACTTGACCATTAACGCCGCTTAACTGTC 3202 37 100.0 36 ..................................... TGTTTTTTTAATTCTCCGGCTAATTTTTTTAATTCC 3275 37 100.0 36 ..................................... GACAATTTTGGTGATTTGTACTATAATTAGTCATAA 3348 37 100.0 39 ..................................... GAGACCTCAAACCCCCCGTCAATCATTTTGATATTTGAG 3424 37 100.0 42 ..................................... CTATTAATCCAATCAGCATAAATATTTTCGGCGCTTTCTGTG 3503 37 94.6 33 ..........C.....C.................... AAAACTTGATTTAATTTCCTCCCTGATTCAGAG 3573 37 94.6 35 ..........C.....C.................... TGCAATTTCAGTATTTTGGTGAGTTTCACCATAAC 3645 37 97.3 0 ........................G............ | ========== ====== ====== ====== ===================================== ============================================ ================== 23 37 99.3 36 ATTGCAATTTACAATAATCCCTATTAGGGATTGAAAC # Left flank : ACATCCGCTGCATCTGCTTCTGCTACTTCACAAATTACCTCACCCGTAGCGGGGTTAATGGTAGCAAATTTTTTCTTGCTGACACTTTCCACCCATTCATTATTTATTAGCAGTTGGGTAGGACCTATTTTCACCTGTGGTTGTGGTCTTGTTGCTGTAACCATCAGACCCTCCTAAAATTTTAAGGCTTTTTGTTAAATGCTATTAAATTGATTCCAGGAGTTACACAATTACGGCTAAATCTTTTATATATGTTTACATTTGCAGGTGTTTTGCGCGGATGGGTGGGTGTAAAAAATTGGTGCTGTAAAAAAATGGCTGTATCTCTTGATAGGCTTGACTTTGGGGTTATTCCGCTTTTCCACCCACCCGCGCACCTTACACAGACTGGGTTTGGGTGTTTTTTGCTCTTGACACGATTCCTGAAATGGACTATGATAGAGTCACTCGCGCAATCGAACCTTGAAAACTAAATATAGATAGGCTTTCAGGATGCCGCT # Right flank : CGGCTTAAATGTAAATACTCAATAGATCCACGATTCGTCATCAAAATTTCGTAAAAGTTAAAGACGGTGATTGGTGATTGGTGATTGGTGATTGGTGATTGGTGACTGGGAGGATGAATAACCCAATGCCCAAAGAATATTAAGATTGTTATAGTGTAAATATATTTTTGTGATGAATACCGTACAAGTTGTTTCTGGTTTAACTGAAATTGCCCAAAAAACCCGTTTAGCTGCTAGTAGGTTGGGTGTACTTGCTACTGAGGAGAAAAATCAAGCGATTAATGCGATCGCTCTAGCTTTAGAATCTGCTCAGGATGAAATATTGGCTGCTAATGTGGCTGACTGTGAAGCAGCTATGGCGGAAGGTATTGCTAAACCTCTTTATAAACGTTTGCAGTTAGATGAACATAAATTAAGAGATGCGATCGCTGGTGTGCGTGATGTTGCTAAGTTAGATGATCCTGTTGGTAAAGTCCAAATTCACCGAGAAATTGATACTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTACAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 52548-51463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPT010000016.1 Sphaerospermopsis sp. FACHB-1094 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 52547 37 100.0 37 ..................................... CGTTGATCGCAGTAGCAAGCTACTACTTTGTAACCAG 52473 37 100.0 37 ..................................... CTCTGATACGAGCTTTACGGGCAGAAGGACAGTCAAT 52399 37 100.0 34 ..................................... ATTAGGTGGGAGTTGAAGTCCCATTCGTCTTTAC 52328 37 100.0 39 ..................................... AACAGTAGAAGACTCAAACAACTCTACACCATAGACAGG 52252 37 100.0 40 ..................................... TACCCTCACCTAAGAGGTCTAGCTCATCACCAAAAGCACT 52175 37 100.0 36 ..................................... TGGATGTCTAGCTCTTTTGAGTGATGAACTGTTGTT 52102 37 100.0 41 ..................................... GTAATCTTGTTATAAGCTTGTGATGGTAATACAGTTACATT 52024 37 100.0 37 ..................................... GCAGGTTTCCACAATTCAACAGTGTGTTTTATTGGTT 51950 37 100.0 40 ..................................... TGTACTCCATCACAGCATTATAGCAATCCGTGATAGTGGC 51873 37 100.0 38 ..................................... TCAAGAAGGTAGGAATCAGAATTAAAGGTTTTATTTAA 51798 37 100.0 37 ..................................... CCATCTGACCAGTATAGAAGACTCCCAGAACCTTGCC 51724 37 100.0 36 ..................................... TAGGCTGTAACCCGAAGCTGGTGATACCCAACAAAG 51651 37 100.0 35 ..................................... GTTTAGCTCTCTTTTTTCTATCTCTTCCACGTCCA 51579 37 100.0 43 ..................................... GACTAGAAGCGTTAATCAAATTCAGTGGTAGTGCGCCTCTTGC 51499 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 15 37 100.0 38 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Left flank : AGATAATGAGGAATTGAATCACCAGTTAGAAAAGCGGTGGTTAAAGGTGCTGAAGTTGAGTGAGGATAATTTGCGGGTTTATCCTCTGGATGAAACTGCTAAACAAAAGACGCGGGTTTACGGAAGTGAACCTCCTTATGAACCACCTGATTATTTAATTTTGTAAAGTTTGATATTCCTGGTTATGCGGGTATGGAGGTGGTCGAAATATCCCCAGCATCAGCTTTTGGGCATTTGTAACGAAATGTAAAGGAATGTATTGGTTTTGGCGCAGGAAGCTATAAAGATTTACATTTAGTAATCTTTGGTAATTTTGAGAAAATGTTGGTTTTTTAGGTTGACATCTTGGAGTTTTTCGGTTAAATTATTTTTATTGGCTGGAAACGGCAATCTGAACCTAGAAAATTAAATACTGACTTCGCTTGTTACATCATTGTTTCCGTAGCTTGGCGCAAACGCCCCTTGAAAGCTATTTGTAACAAGGTCTCCATGAGTGTAGG # Right flank : AAAACTTGGGGATAAAAAAAGATAGAATTACTAAAAAATGCGATCGCTTGGTTGTAATAAATTAGGACTTACGCAAGATGTGACTGAAAACCTTATTCTTGCGTAAGGGTAATTCATGAATTACCCCTACTTTCGTTCCCTGTTGCGTAAGTCCTGCGTAATTTAATCAGCTTTTGCAGTGCCAATACAAAAAATTGAACTTGCCAAAATAGACAATAAACAATAGACATCTCCAGAAAAGAAATTCTGGAACTTATTTATGGGGGCAAGGCGAAGCTTATGGGATATCTAGATGTCTGATTTTTTCGATAAATTATCGCCCTGTAAGGGCGAAGCATTTGGAAAATATCCTTTGGTGAATACCGATCATTAATCGCTCGAATGCTTCGCCCCTACTTCGCCCCCACAACTTATGACAGATTAATACATTCTATTGTGGAGATGTCTAATAAACAATGTACAATTGAAAATTATACTTACTGCAATTGGTTTTTTTGTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //