Array 1 13967-12167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHN01000008.1 Streptomyces sp. NRRL F-6131 contig8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 13966 27 100.0 34 ........................... GGCGGGTGCCCGGCGGCGGGGTCGGGAGCAAGCT 13905 27 100.0 34 ........................... GGTGCGGCGAGGCCGGGGTGGTACGGGAGATCCT 13844 27 100.0 34 ........................... GTCAAGTCCGCCGACGCGCCGGTGCACGAGGTCT 13783 27 100.0 34 ........................... GACATCACCAGCGCGAGGCCCTCCAGGAAGATCT 13722 27 100.0 34 ........................... TACCCGAAGGACCGAACGGATGAACAGCACGACT 13661 27 100.0 34 ........................... CTGCTCGCCCACGTCGTGGGCGCGGGCAAAACCT 13600 27 100.0 34 ........................... CTGCTCAAGCAGAGCCCCGGGCTGGCCGAGGCCT 13539 27 100.0 34 ........................... GAGGGAACGGCCCCCCGCCGGACCGGACCGGCCT 13478 27 100.0 34 ........................... TGGTCAGCGACAGAAGGGCAGTGCACGGTGACCT 13417 27 100.0 35 ........................... CCAGGGCGGGGTTGAGCTGGGCGGAGCGCACCAAG 13355 27 100.0 34 ........................... CCCATCAGCACCCTCATCGCTGCCCTCCAAGAGG 13294 27 100.0 35 ........................... CCGACCGATCGCACAGGCACCTGAAGGCTGACCGG 13232 27 100.0 34 ........................... CCAGCATGCTTAGCCGTATTGCACCGAAGGAAAT 13171 27 100.0 35 ........................... CCAGGGCGATGCCGGCGACGCGCAGGACAGGGGTG 13109 27 100.0 34 ........................... CCCCGAACGCAATCAGGTCCCCCTCCGGGGTCCG 13048 27 100.0 34 ........................... CCCAGTCCCCCGCTGCGCGACCACACGGCCCCGC 12987 27 100.0 34 ........................... CCAGCCACGGGCCGAGCCACACGTACCCGCCGCG 12926 27 100.0 34 ........................... CCTCCGCGTGGCTGAGTGGTCAGCCGGCGCAGCA 12865 27 100.0 34 ........................... CCGTCCAGGCCACCCTGGACCGGATCCGCCACCA 12804 27 100.0 34 ........................... CCCTGACCGCCGCCCTGCTCCGCGCGCGCTGGCG 12743 27 100.0 34 ........................... CCCCGCGCCAACGGCTCCCGGCCGCCAGCCGGGC 12682 27 100.0 34 ........................... CCTTGGGTCGGCGGGCACGGCGGGGCGGGCGAAC 12621 27 100.0 34 ........................... GCAGGCTGGTGGCGGCCAGGGCCACCGACGTGAC 12560 27 100.0 34 ........................... CCACGGCGGCGGCGCGGCTCGGGTCACGGCAAAT 12499 27 100.0 34 ........................... CCTCCGCCTCCAACTCCCGGCGGAGGCCCCGTTC 12438 27 100.0 35 ........................... CACTGCCGCTGTCTCCAAACTGGCGTAGTTCCGGA 12376 27 100.0 34 ........................... CAGGTTCCTCGGGCGGTTGGCCGCGACGGTATCG 12315 27 100.0 34 ........................... CTCTGCAGTACGGGTGGTCATCCGAACCTTCGGA 12254 27 100.0 34 ........................... CCTCCGAGTCACCACTTCACGGGCCCGCCGGCCC 12193 27 88.9 0 .....................AA..C. | ========== ====== ====== ====== =========================== =================================== ================== 30 27 99.6 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : ACCACCAACGACGTCGGCATCGCCTGGCCTGTCGGCGGAGGCTCGATCACGGTCGCGGTGCTCTCGACCAAATCCGACCCGAGTGCGCCGGCCGACGAACCGCTGATCGCCGGGACTGCGAGGCTGATCGCCGACGCGTTGGCCCAGCATCAATCGCTCGCACCATGAGCCCGATGAAGCTGCCTGCCCACCTTGACTCACGCGGCCACCAGGTCGCCACGCCAGCGACTCAGCAAGGCGGTACAACGATGGGCACTCACGGTCGCTGCGCGTCGCCCGCATGGACGAGCACCTCGGCGCGCCAAGCCCTTCATACCCCTGACCACTACATCTACCGCCCTGGCAACCATCAACAGGAATGCCCTCGCAAGCACGCCTAGCCTCACGCCCGGTAGCCTGGCACCAACCCATGACATCGCCGAAATGCGGGAAATGCCCGAAACTAAGGAAGTTGCACTCATCGCCTGATATCCGTGGCAAACCCCCAGCTCACGGACTCT # Right flank : CCGATGTCACCTGCCCCCTGCCGGGCTGCGGATATCTACAGCGCGTGACCGCACAGGGCGGGGCGCGCTCCACAAACTGGCCCCGGCCCTGACCGAATCGGGGGCGCTACGACCGGCGACACGATCAGAGAACCGCGCGCCGCGCAGCGGAGAATGGCCATCCCGCCGCAAGCGCCGCCGGCCACTGGAGAAACCCTCGCCCGATCACCTCGTTAGCTACAAGGAGATCTGGTCCCCCGAACGCGGGGGTGGTCCCTGTGTGTGGCTCACCTCGGCCCCATCCTGCTCCCCGCCCATGCGGGGTTCTCATACCCAGGGCCAACCACCCGGCAGCCCGGCAGGCGAACTGCATCGTGGCAACTGTGTTTGGTAAACCTCACAAACGACACCCCGTAATCAATTCCCCATGATGGGAGAACCTGCCCCTACTCTGAGGAGCAGGTCAGTCACGTTCCGAAAGCGCCCTGCAGGTGCGCGGAACCACGGCCGAGACCTCGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18528-16724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHN01000008.1 Streptomyces sp. NRRL F-6131 contig8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 18527 27 100.0 34 ........................... CCCGGCGGCCGGCTCGCTGCTGGCCCGGCAGTAC 18466 27 100.0 35 ........................... CCAACTGGACGGTGTCCACCGGGCAGAACCTGATC 18404 27 100.0 34 ........................... CCGCGGACCTTCTGCAGCACCGCGTCGGCCATCA 18343 27 100.0 34 ........................... CCGCGACGGGCTCCAGACAGCCCGTCTCGCCGGG 18282 27 100.0 35 ........................... CCCAGGCTCCGGACTCTTTCCCCCACCGGCTTCCT 18220 27 100.0 35 ........................... CCAGTACGGGGCGCCGGCTGCCGGGTAGCGGCGGG 18158 27 100.0 34 ........................... CCCCGAAGACCCTGAGCTTCGACAGCGACGGCTG 18097 27 100.0 34 ........................... CTCACCAAGCGCGCCGTTCAGCGGGTGATCACCT 18036 27 100.0 35 ........................... CCGAAGTTCGACAGGGCTTCGAAGATCGGCTTCAA 17974 27 100.0 35 ........................... CCGACGAGTGCGACCACGAGATGACCCGACGCCGA 17912 27 96.3 34 .......................A... CCCGTCAGCCCGCTGGCAGGGGACCGGAGTTGAC 17851 27 100.0 34 ........................... CCTCCCGCTCGCCCTCGGCAATTCGGGCCGCCGT 17790 27 100.0 34 ........................... CCGTCGTCGAGATGACCGCAGTGACCCTGCGCAT 17729 27 100.0 35 ........................... CCCGCATGAGCGCATGGACCACCGACCGCGCCAAT 17667 27 100.0 34 ........................... CCACCCGATCCAGGTCGCCGCCTGCCACTGGAAC 17606 27 100.0 34 ........................... CCGATCCAGGCCGCGCGCCCGCAGCTCCTCCCGG 17545 27 100.0 35 ........................... CCTTGGCGCTGTCGTGGACCACGCCGAGGTCGACC 17483 27 100.0 34 ........................... CCGAGGACCGCACCCTGGCCGCCGACGAGCTCCC 17422 27 96.3 34 ..A........................ CCATCTACGAATGGCTCAAGCAGGTCTTCGTCGT 17361 27 100.0 34 ........................... CCGACACCTGCGCGGACCTGCGGGTCGAGCTCAC 17300 27 100.0 34 ........................... CCGAGCCGTCCGTCGCGAACTCCGCCGACAGCAG 17239 27 100.0 34 ........................... CCTCGTAGCGGGTGGCGACGTGGTCCAGGCCCGG 17178 27 100.0 34 ........................... CCTCCAAGCGCCGGGCGTGAAGTTGAGGCGTGGT 17117 27 100.0 34 ........................... CCTACGCCTGTCAGAGCGCTGCTGGGGACTGCTT 17056 27 100.0 35 ........................... CCTGCCTGATGGTCAAGATCGCTTCGACCTTGCCG 16994 27 100.0 34 ........................... CCCGCGCTGGTCGTCGGTAAGACCGTCAACCCAG 16933 27 100.0 34 ........................... CCCCTCCTCCGCCGGACCCGCTGCGGACGGTGTC 16872 27 100.0 34 ........................... CTCGACGTCGCCCGGGCCGAGAAGCGAACCCGCG 16811 27 100.0 34 ........................... CCCCGAACAACATCCGGCGGCTGGACCTGGAGCT 16750 27 96.3 0 ......T.................... | ========== ====== ====== ====== =========================== =================================== ================== 30 27 99.6 34 CTGCTCCCCGCGCGTGCGGGGTTGATC # Left flank : CGCCCCCTTCTGGGCCGCCCGCCTCACCCACCTCGGCACCTCCCCCGGCCCGATCCCCCTCGCCCACCTCACCGCCCCCCGCCTCGCCACCGCCATCCGCCAAACCCTCGACAACCCCCACCACCGCACCCACGCCCGAACCATCGCCACCGCCCTCGCCACCGAGGACGGCCCGGCCGCCGTCCTCACCACCATCGACCGCCTGGCCCAATAGCCCCGCCACCATCCGCAACTGCACCCCTGCACGACAGGGTTCCGCCCACTGCACAGCGACCAGTGAGTGTGGCGCTGGCGCAGTTGGCGCAGACGACGAACGAGTCCCTTCGCCGTCCCAGCCACCGCACCCGAGCAAGCCTTCTCCACCGCACGCACCGCCACTGCCCACGCAGCCCGGTAACCTGGCACCAGCAGACCGACACACCAGAATGCGTAATATGCCCGATTCAACGAAAGTTGCTCACATCGCCACAGGGCCGTGACAAACCCGCAGGTCAGTAACT # Right flank : CGTGGTCCTGGATGACTCGCCGCTGGGGCGGAACGCCCGAACCGCCGACCGTGATCCGTCGGCCCCGCTCCGGTCACTCAGGCAGGTCGGCGGACAGGAAGGGGGCAAGGAGCGCGAACAACGCGTCGGGGCGGTCGAGGGGGATGATGTGGCCGCAGTCCTGGAGGTGGTGTCCGACCAGGTCATCGGCGACGGGACGGAGCTGGCGTTCGAGCCCGGTGCCGACGGGGTGGGAGCCGATGGCCATGGTGGGCATGGTCAGCCGAGCCGTCGCGACGGCGTCCTGGATCTGCTGCGCGCTGGTGGGCAGGGCCCGGTAGTGGGAGAACGCGCAGCGCAGGGCTTCGCGCCCGGTGTAGGCGTCGACGAAGGCCTCACGGATGTCGTCGGGAATTCCTCGCCCGAGCGTCCCCGAGTCGAGGAACCAGTCGATGTACAGGGCCTCGTTGCCGACCACGACGGTCTCGGCGAGGCCGGGTACGGCGTGGAAGCCGAACCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8562-7005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHN01000058.1 Streptomyces sp. NRRL F-6131 contig58.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8561 29 100.0 33 ............................. CGCTCAGGTGGCCGCCTTCGGGCGGCCACCTGC 8499 29 100.0 32 ............................. CACAGCGGGAACACGCCGTTGTCCTGGCCGCC 8438 29 100.0 32 ............................. GCTTCCTCGACCACCACCGGGCCAAAGGATCC 8377 29 100.0 32 ............................. GGGTTCGCGTTCGCCGCCCGCGGCATGGACTC 8316 29 96.6 32 ............................T GTCGCGAGCCAGGTGGTGCCGTCGGGGTCGCG 8255 29 100.0 32 ............................. GATCCGGATCGCTCGGCCGGCACCCTGCTCGC 8194 29 100.0 32 ............................. CTTCATCTCTACCCGGCCGTCGGACCCGTCGT 8133 29 100.0 32 ............................. TGCGCCAGCCCGCTACGGCCCTCAACTGGGCC 8072 29 100.0 32 ............................. GGCGGCTCTGGCTGTACCGGTCGGCGGAGTAG 8011 29 100.0 32 ............................. CGCGTTGGGCATGGCGACGGTCACCGTCGTGG 7950 29 100.0 32 ............................. GGGACGTTGGCGGGCCAGCGGGTGGCGGCGGC 7889 29 100.0 32 ............................. ACCCCGGTCGCCCGCACCTACCTCGCCCAGCA 7828 29 100.0 32 ............................. AGCGACGGATCGGCCGAATTCAACAACGTTGT 7767 29 100.0 32 ............................. ACCGTGAGGGAATCGAACCCCACAGCGGATAT 7706 29 100.0 32 ............................. ATCTCGCCGGCCCGGTCCTGCTGGCCGTGCGG 7645 29 100.0 32 ............................. GCCCGCCTCGCCGAGGGCTCCGCCCGGCAGGT 7584 29 100.0 32 ............................. CACAACCGGTCGGGCATCGGCGTTCAGATCGC 7523 29 100.0 32 ............................. TGGGTGGGCCTGATCCACACCAGCTCTCGAAT 7462 29 100.0 32 ............................. GTCGACTTCCGTCTCGGCGGGACCTCGATGGG 7401 29 100.0 32 ............................. CTCGTGGACGGCATCCGGTCGGCGGAGTCCCA 7340 29 100.0 32 ............................. TTGTGCGGCGGCAGAGGATTGCCGACCACCAG 7279 29 100.0 33 ............................. ACGGCCGGGTGGTCGGCGATTCAGGAAGGAGAC 7217 29 100.0 32 ............................. ACGGGCACCAGCTACACCTACGACGGAGCGCA 7156 29 93.1 32 T....................G....... CCGAACGCGGCGATCGCGAACTACAAGGGCTT 7095 29 86.2 32 ............TG..T.....A...... AGGCCGATCGGGTTCGTGGGCTGGTCGGTTCA 7034 29 75.9 0 T.......T..C.GG.T....G....... | T [7019] ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.1 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGGCCGCTGTCCGGCTGCCCTGCGCTGGGAGCCACGCATGTTGTCGGCTGGCGGCGAAGGGCGGATGCGCGCTGGCTGAGTGAGCCTTGCCGGAATGAAGGAAGTTCTCTTTGCCGATGAGGTGTTGGCGGTTGACCATCTGGCGGCTCTGATGTGCGAAGGGGGCTGCAAGCGTTGCTTGGGCTCGTGAGCGACGTCGGCCGGGAGGATTGCGGTGGGTGGTGATCGTCGATCGGTTCGGGTGCGTGATTGCGTCGGTTGGTCTTGTTGGGGGTTGGGTTGCCGGTGGAGGTTGAATGCACAGGAAGTCGGCGGTGTCGACTTCCTGTGCACTCGTGGGCTGGTGAGTAACGAGGGTTCGGGGGCGGGCGTAGGCTTCGCCTGGTGGCAGTTCTGGTTAGTCTCGACGGCAGTAGGTGTCGCGATTGTCGCAAGTGTCTGAATCCCAAGAAGTGGTGAAACTTAGCCCTCCCCTCGCGTGAAGCCGCAGGTCAGGAAGT # Right flank : AGCTGGGTGCGTTGCTCGATGCAGTGCGTGGGGGTCAGTGGCGGCGGGTGAGGAAGAGGTCGTGGAGGCGGTCGACGTGGATGTGGGCGCCGTGCGAGTCGAGGACGGTGGCGGTGTCGGTGAGGGCGCGGGTGCGGTGGTCGGCGCTGAGGGACACGTACATGGAGAGGGAGGCGAGGTAGGCGAGGTAGTCGTCGGTCCCGTAGTAACCCTCCTCGCGGAAGCGGAGGGAACGGAGGTCGGTGAAGCGGTCGTCCTGCGCGCAGTCGAGGGCCGGCCAGTGGCCGAGCATGTCCGGCCAGTGTCCCGGGGTGTCGCCGTAGGAGGAGGCGAGGACGGCGTGGGGTGTGTGGGTGAGTCCGTGGCGGCGGTCGACTTCGGCGAGGGCGGCGTGGAGCCCGGGGTCGCGGACGCCCATCGGGTTCCAGAAGAGGGCGAGCGCCCCGCCCGGGGCGAGGGCCCGGTGGGCGAGGTCCCAGCGCCGGTTCGGGTCGATCCAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11119-9696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHN01000058.1 Streptomyces sp. NRRL F-6131 contig58.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 11118 29 96.6 32 .............C............... GCCGAACTCCACCCTGGTGTTCGTGGTGGACA 11057 29 96.6 33 .............C............... GAGATGCTGGACAACCTGCTCAAGGGCATCGAC 10995 29 96.6 32 .............C............... GGCAAGAGCCCCCCGCCAGCGTCGACCTGACC 10934 29 96.6 32 .............C............... GCCGACCACGCCGAGCTGTGGCAGCTGCTCGC 10873 29 96.6 32 .............C............... GCCGGCCAGGGCGGCGCCTTCGGGGCCGGGGC 10812 29 96.6 32 .............C............... TCGCCAGCCACCTCGCCGACCTCACCAACCTC 10751 29 100.0 32 ............................. GCGCTCCGTCAGGTCGTCGAGTAGCTCGTCAA 10690 29 100.0 32 ............................. GCAGATCTAGACAGGGCACGCACGACCGTCGA 10629 29 100.0 32 ............................. TCGGGGGAGAGCCCGACACCGTGGGAGACGGT 10568 29 100.0 32 ............................. AAGTCGGCGTCGGCGGTGTACAAGCTGGACAT 10507 29 100.0 32 ............................. CGCGGCGGTGCTCTGTAAGGTGGGCATCGGCC 10446 29 100.0 32 ............................. GTCGAGCCGGCGAAGCTCCGCCAGGTCGTCGG 10385 29 100.0 32 ............................. GTCGAGGGCGAGCTGTCAGCGTCGTGCACCAT 10324 29 100.0 32 ............................. CCGGCCTTGACCGTGGCCGGTTCCTCCGGCGA 10263 29 96.6 32 ............................T TGGGGCTGGAAGAGCATTCGCCACCCCCAATG 10202 29 100.0 32 ............................. CACATCACGCTGACGGACCTGACCCTCCAGCC 10141 29 96.6 32 ..........................T.. TTCTGCCAGGTGTAGGAGCGGTGCCAGCTGTC 10080 29 100.0 32 ............................. TCCGGGGCGGCCGGGGGTACGAAGACGGAGGT 10019 29 100.0 32 ............................. GTGACGCACGGCGACCAGCTCGGGGCGGGATC 9958 29 86.2 32 T.......T..TA................ AACGTCGGCGACCAGGTCTGTACGAGGGGCAG 9897 29 86.2 82 ...........G..T......G..G.... GACTCTCGGGCTCGGCGGCGGCGGATGACCGGCTGCTCCTCGTGTACGCGAGGATTGCTGGACAATGTGGGACTCGCTGGCG 9786 29 86.2 33 ...........GT...T.......G.... ATGTAGAACTGGCCCTGGCGCCATGCTGCTGGG 9724 28 75.9 0 T..........T-.T.T.......G..T. | T [9702] ========== ====== ====== ====== ============================= ================================================================================== ================== 23 29 96.0 34 CTGCTCCCCGCACGCGCGGGGATGATCCC # Left flank : TACGAGGGCGCCCCGCACTCCTTCTTCGACGACGCCTTCGCCGACTGGCAGGACGCCTGCACCGACGCCTGGCACCGCCTCCTCGCCTTCACCGGCGTGTACGCGGGCGAACTGGCAGCGTGAGGCGACCGAGAGGCTGAGCCCCACGCGCCCCGCCGGCCCGCCGAGGCGACCTCGGCGGGCCGGCTTGCGGTGCTGTGCGGGGGAGTTCGGTCGTGCTGCAGTGCTGCGCCGTATCGAGAACGGTCGGCTCGACGACCAGCGACCCCCTGCACCCGCCGCCTGTCCCGATGCGACCGGGCTCGCACGATGTCGGCGTCCGGCCACCGCAGCCGGACGCCGACCGGCGCTGCGGCAGTCGACGCGGGCGTAGGCTTCGCTTGGCCGCGCCCCTTCCAGGGCCTGCACCGCAATCGATGTCGAGGAAGCCCCGATTGTCCGAATCTCAAGAAGTTGCGAATTCCGGCATCATCGTCGCCTGAACCCGCAGCTCACGAACT # Right flank : TGGTTGGCGTTGGCGAGCGCCCATGGGTGCTCGCTGCTTCCTATGCAGTGGGGGCGGTCCGGTGGACGCGCCACGTGTACTCCTGCATGGCGGGTGAGGGAGGGGGCGCTGCAGTGAGTGCTTGCCGAGTGGCTTTGTCCGCGAGTTCGGGTGGGGCCTGTATGCCACTTCGGGGCCGCCCGGGAGGGGTGGCGTTCGATTCTGTGGTTGCTGGGTCGGTGTCCGCTGGCACGAGCCAGCGGACACCGACCCCTTGCGCGCCTCCTGAGTGGATCAGGGGGTTGCGGCGGCCTTCTGGATCCGGTGAGCGAAGAGCGTGGCCAGGGAGTGGGCGGTGGCGGGGATTCAGGGAGCTGCCTTCCCTTTCCAGTGTCACCTCGGTGGTGACCGTGCCCAGGCACATCGCGCTTCCGATCCGTTCGTAGCAATACAGGGCCGGATGTTCTGTGGGTGGGCCGATTGCAGTTGGTGAGTCGCCTGCTGTCGGGCTCAGTTTTGGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGATCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 15462-14517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHN01000058.1 Streptomyces sp. NRRL F-6131 contig58.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15461 29 100.0 32 ............................. GGCAACGGCAGCGGCTGGAAGACCTGGCTGGT 15400 29 100.0 32 ............................. GCCGAGCTCAACCGGCACCTCGGTACGACCCT 15339 29 100.0 32 ............................. TTGGGAGGCGTGCCCCGCGGCACGCGCTTTAA 15278 29 100.0 32 ............................. TGGCTCGGGGCTCAGGGGATGGACCACGCCGA 15217 29 100.0 32 ............................. ACCCTCAGCCCGTTCGTCGAGCTCGCCGCCCG 15156 29 100.0 32 ............................. ATTTCCGTCAACAACACGTGTAGACAGTGGAG 15095 29 96.6 32 ................C............ CCGGTGACCCCGCGCCCGGCAAACCGGTCGAG 15034 29 96.6 32 ................C............ CCCTCAGGGGCGGCCAGCGCAGCTACAGCTGC 14973 29 96.6 32 ................C............ GCGCCACGGTTGGAGTACCCCGTCGCCGAGCC 14912 29 89.7 32 ...........G.A..C............ GACATCGGCGTCGACACCAGCGACTGGCCCGC 14851 29 86.2 32 ..A........G.A..C............ GGCGGTTTTCCGGTCGTACGGGTTGACCAAAG 14790 29 96.6 32 ................C............ GACGCGATGTGGGACAACGTCGGCCGCCAGTG 14729 29 86.2 32 ...........G.A..C.......A.... TTCACGGCGTACACGTCGCTGGTGATGGCGGT 14668 29 93.1 33 ........T.......C............ GTGATCCCGCTGCAGAATGCGGTCATTGCGCTG 14606 29 89.7 32 ..........TG....C............ ACCCGTGGCGACCGCACCAAGGGCGGCACGAT 14545 29 69.0 0 ...T......TGTAT.C......C....T | ========== ====== ====== ====== ============================= ================================= ================== 16 29 93.8 32 CTGCTCCCCGCACCCGTGGGGATGGTCCC # Left flank : CGAGAAGACCGGCGAACGCCTCGAACTCGTCTTCGACCGCACGACCTTCGCCTACCTGGGCAGCCGCGGCATCCAGGTCAAGCAGGTCAACAACATCAAGCCCGGCACGGTCACCGAACGCACCGCCGTCCTGGAGCGCACCGTCGTCGACGCCAAGAAGGCCCGCCCCACCTCGGGCGGACCCGCCTGAGCAAACCCCGGGAACGACAGCGGCGGCAGCCGGGGGGCTGCCGCCGCTGTCCGATGCTGGCCGAGGGAATCAGAGCGCGAACCGGCGGCGCCGGACGTGTGCACGAAAAGTCGGCAACGTCGACTTCTCGCGCTCCGCCGGTTCGGGGGCGGGCGGAGCTGAAATGCCGTCGCCATCACGCCCGCAGGGCGTGATGGGTAACCTCCTGACGTGTCTCCACTCACCGTCGTCCCGAGCGCCTGAAATGCCCGAATCTGCAGAAGTTGCAAGTTCCTGCCCCACTGACGCATAGACCCCCAGGTCGCGAAGT # Right flank : GACGGCGTGTTCATCGTCCTCGACCAGGCCGACTGTGCCCCCATGCCCACGTGCATGGGGGCACAGAGGGATGTGCTCGGTGGGGAGGTCGGTCCGGTGGTCGGGTTGGGGCTGGGGGAGGTTGTCGGACGGTTGGGCGCCGTTCTCAGGCAGTGCTGGCCAAGGCCGTTCGCAGCTCTGCGTAGGTGGGGGCGAGTTGCCGCAGTCGGGTGGCTGCCGCCTCGTCGTCGCCGTGGAGCAGTGGGTACTGCAGGTTGCCCAGGAGGCGGGCTTGGCGTTGGGCGATGGCGGCTGCGGGGGACAGGTCCAGCTGTTCCAGGCAGGTCGCCGCGTCGTTGGCGCGGCGGGCGCCTACGCGGAGGGCGAAGGTGGTGAGGAGTGTGCGGGTGTCGGTGGGCAGGCCTCGGTCGACCATCGCGGCGAGGGCCTCGACGGCGGCGGCTCCGCCGAGGGAGCCGGGCGGCATGGGGAGGTCGTTGCGGCCCGCCAGCCACTGCCGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGTGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //