Array 1 470741-471434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDZU010000002.1 Listeria innocua strain FDAARGOS_953 tig00000105_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 470741 36 100.0 30 .................................... CACCTGATGCCAAAAAGAAGACCCTCCTCG 470807 36 100.0 30 .................................... TTTTATCTCGTACATCTGAAATAACCACAA 470873 36 100.0 30 .................................... CTTGAAAATGTTGTAGATTTGAATGGTTCT 470939 36 100.0 30 .................................... TTTAATTCCGCTAGGAGCAACCCAGGATAA 471005 36 100.0 30 .................................... AGGAATAATTACAAAGACAGTTCGAGATGA 471071 36 100.0 30 .................................... ATTAGTTTTTACCGTTGTATTTGTATCATC 471137 36 100.0 30 .................................... ACATCTGACATTTTTGCCTGTAGAGGACTA 471203 36 100.0 30 .................................... TGAATTTTATCTGCTGTATTTACTCTACAC 471269 36 100.0 30 .................................... GACCGTAGAATTCCGAATGGTGCGAGAGCG 471335 36 97.2 30 ..........................G......... AGAGAGGATGAACTCTAAATAATCGGAAAT 471401 34 83.3 0 ..............C.....C....A.-..-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAAAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACATCTCTCAATCTACTCCAGCTAGAAAGAGTTAAACCATTATGAAAGAGAGGTCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTGAAAACTACGACACACGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 271717-272266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDZU010000004.1 Listeria innocua strain FDAARGOS_953 tig00000973_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 271717 29 96.6 36 ..............T.............. GGCACTAAGCTATCTTGGTATGATAACCGGAAGGGC 271782 29 93.1 38 ..............T.A............ TTGGATTATCAGCATTTTATTAATCATTTGGGTAAAGA 271849 29 100.0 36 ............................. TGACAAAGTATCCGTGCACCAATTCCCCGTTATCTA 271914 29 93.1 37 ..............T.A............ ACAAGACGCATACAACTTTAGAGGTGAGCGAAATCGA 271980 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATTCTCCTG 272043 29 100.0 36 ............................. TGGCATTATTTTATCTAGTGAACCGGAATCTAAAGT 272108 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 272173 29 96.6 36 ..............T.............. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 272238 29 72.4 0 A.....AG......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 94.6 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCGGACTCCATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATTGGACGAATCTTAGGTCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGGAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAATATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTTCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 287884-289659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDZU010000004.1 Listeria innocua strain FDAARGOS_953 tig00000973_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 287884 29 100.0 38 ............................. GACCAATCCTGATGTTTTTTAATCGTATCTTTCGTAGC 287951 29 100.0 38 ............................. ACATGTTAGTGATATATGTGTAAGTATGAAAGCTGAGG 288018 29 100.0 35 ............................. GTCGAAGATGGAATGGAAATAGACGAACTTGCGGG 288082 29 100.0 36 ............................. TACACACAAATATCTTTTTGACTCATCTTTGTTGCC 288147 29 100.0 35 ............................. GCTATTTTGATTGAAGTAGCGTTTATTAGTAATGC 288211 29 100.0 36 ............................. ATATTTATTGTGTTCGTAAACAAGTATTGCTGTCCC 288276 29 100.0 34 ............................. TTGACATCCGATAAATCAAAGTTCAGTGCTTTTC 288339 29 100.0 37 ............................. GTACCTCTAAAATGGGGAAATGTTCTTGTATCTCATC 288405 29 100.0 35 ............................. TATGAATGAAATAAGAACTGTATGTTTTGTCTACG 288469 29 100.0 34 ............................. GTTTCATATTTTAAATATGTGGATGCATTCTTAA 288532 29 100.0 37 ............................. CGGAAGATTCATCTGCTAATACGCCTAGATTGTCTGC 288598 29 100.0 34 ............................. AAAACCTTGTATAAACCGTAAGCAGCTAAACCGA 288661 29 100.0 36 ............................. TCTTCAGCAAAATGTTGAATGTCAAACTTGCGCTGT 288726 29 96.6 35 ..................T.......... GTTCTAAGTTTAGAAATATCCCACGTGTACGTTTG 288790 29 100.0 35 ............................. GTGAAAATAAAATCTAGACATTCTAAAGCGCTTTT 288854 29 100.0 36 ............................. TAATGATCATTGCAACCGTGAATATCAGTGCAACAT 288919 29 100.0 37 ............................. ATAACCCTTTTACTATTGCTTTTAATAAATCCCATCC 288985 29 96.6 35 .......................A..... TTCGGTGTAGTAATTAATTCTCTGTAGTTACTACC 289049 29 100.0 37 ............................. TTCAGAGACATTTCTTAAAGCTTTTGAAAGAACTTCC 289115 29 96.6 34 A............................ AAACTTTGAGTTAACAACCCATTACGCCCAACAA 289178 29 100.0 35 ............................. GAAATACCTTCGATAAAGTCGCATTCGTATACATT 289242 29 100.0 35 ............................. TTTCCTTCTTCTGTTGAATACAAATGGCATTTATC 289306 29 100.0 35 ............................. GCAGTAGCAGTAATAAATGAGCTATGATGCTTGTT 289370 29 96.6 36 ...................G......... AATAAAAATACTGATTTCTTGCATTGTAACGTCAGC 289435 29 100.0 35 ............................. CAAAGTCAGGCAAGCGACGTAATACTTTTGCTTTT 289499 29 93.1 37 ........C..........C......... ACTGGTTACAACATCGATAAAACGATTTATCCAGTAA 289565 29 100.0 36 ............................. CTGAATCAGCAACTGGAACAGTATCTAAAACATTTG 289630 29 93.1 0 .......................A....C | C [289653] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTTCTACATTCTTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTTGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAATGTCTTGGCTGCGAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //