Array 1 1124251-1122450 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047239.1 Pseudoalteromonas sp. M8 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1124250 29 100.0 32 ............................. CCGGTATCAGTTTCGATTTTTTTCGAAACATT 1124189 29 100.0 32 ............................. GTAAAAGAAAAGTTTAAACATTGCAACTCATT 1124128 29 100.0 32 ............................. AATGATATACCGAGTGACACATCACCCAGTGG 1124067 29 100.0 32 ............................. GTAAAAGAAAAGTTTAAACATTGCAACTCATT 1124006 29 100.0 33 ............................. CGTACTTACCATATGCTTGGCCAACCAAATATC 1123944 29 100.0 32 ............................. TAACTGCCAAACAGCATGATGCTATAAGCACT 1123883 29 100.0 32 ............................. ATGGAATAGCTCTCTTGTCCGATATTGAAAAT 1123822 29 100.0 32 ............................. TTTGTTAGGGTAGACCTTAATATCAACCTTTG 1123761 29 100.0 32 ............................. ATACCGTAGCTGTATCCATACTTGGGTTTGTT 1123700 29 100.0 32 ............................. TATTTTAGCCCCGGTGCAAATTGGGGTGTATA 1123639 29 100.0 32 ............................. ATAGGGGTCGACCATTTAATAACACGACGGAG 1123578 29 100.0 32 ............................. TAGATGGTTTAGATGAGTACGGAAGAAATAGT 1123517 29 100.0 32 ............................. GACTTCACGCTATCACGAAGCACAAACAGCAT 1123456 29 100.0 32 ............................. TCTTGGGATGGCTTTTTTATATGCCGAGATGG 1123395 29 100.0 32 ............................. TTTTCTCATCATCAATAAAATCCCTGTTTTTG 1123334 29 100.0 32 ............................. TTAAACTTAAAAACAGCGAAGGTCAGCAGGAG 1123273 29 100.0 33 ............................. TATTTGTTTACTTTCCTTGTCTGAGACAATCCC 1123211 29 100.0 32 ............................. GGTAGGCGATACCTAGAAAGCTTAGAGTTAGT 1123150 29 100.0 33 ............................. CAGCGAGTCGTCGCGTAAATCTGGAGACTCAAC 1123088 29 100.0 32 ............................. GCATTTTCATCAGAGTTGAATCCTATATTATT 1123027 29 100.0 32 ............................. AGTTAGATGTAGGTAAAAAATAGCTATACAAA 1122966 29 100.0 32 ............................. CAATAATGAAATTGAGCTTAAGGCAATAGAAA 1122905 29 100.0 32 ............................. GACGCTACAAGAGAGCGTGAATACCAGCGCCA 1122844 29 100.0 32 ............................. CGAGGTGTTTGGGTCGGTCAGTTCCCACCATC 1122783 29 100.0 32 ............................. GCCATAGCCATTCTGTCTTTTTGGAACTATTA 1122722 29 100.0 32 ............................. GGATTGTTTCCAGTTGAGAAAACCAGTAACGA 1122661 29 100.0 32 ............................. AGTTAGATGTAGGTAAAAAATAGCTATACAAA 1122600 29 100.0 32 ............................. CAATAATGAAATTGAGCTTAAGGCAATAGAAA 1122539 29 100.0 32 ............................. CGCCTGAAATCAACAATTGGCTTTGCTGAAAA 1122478 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : ATAGGCGACGAGGGCCATCGCAGCGGAGGGTCACTATGAGTATGTGCATGGTTGTTACTGAGGCGGTGCCACCGAGGTTAAGAGGTCGTCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGTGTGTATGTAGGTGATGTGAGCAAGCGCATTCGTGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGACGGCAATGCGGTTATGGCTTGGGCAACTAATACCGAGTCGGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCTGTCGATTTTCAGGGCCTGAGATTGGTGAAGTATACGCCCAGAGCAAATGATAATCCGGGAGCTGGTTAGCGAACTCCCCTCGTTTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGTGATTAAGATTTATACCTCATAGTGAGAGGTGCTTTTGTACCTAAAATTTTCGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : GAGCGACTCAGGTCTGGACCATGTGCTGGAATTCGTCCGTGAAGCAGCACCAGATGCTCACCTCATTGAGCGGTGAAACAGCGGCGATTCTAGGCCCGACTGTAATCCCGGGATTAAGTTATAGCCATCATTGTTAGCTAGTTATTTATCCACATGACCTAAATCACGCTCAGGATCTAACAAATCTCTCACCCTTCTTTTGAGCACTTTGGCTTCAGGAAAACCTTCATCCGCCTTTCGGCACCAAATTAGCGTATTGTTATAGTAAATTTTGAATATGCCTTTACTTGCTGGCACTAACGCGACTTGTTGTAAATCGTCAGAGAAAGTTGAAAGTAACTCTTGTGCAAGCCAAGTTGCTCGCAACATCCATTGGCAAAGTACGCAGTAATGGATAGTGATGGTCGGTTTTTGCATGAATTTACGTTTTTTTGAAGGCTGTGATGGGATTCTAGCACTGTGATTTATCATATGGCTAGCTTGAAAAAAACGGGGGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1136047-1134589 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047239.1 Pseudoalteromonas sp. M8 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================== ================== 1136046 29 100.0 32 ............................. CACGATACATGGGCCTAAATGCATTGGTTCGT 1135985 29 100.0 32 ............................. CCTACCTCTAGAATCTATAATTAAATCTCTAG 1135924 29 100.0 32 ............................. GAATCTTTTCAGGCTGCGACTATCATTACAGG 1135863 29 100.0 32 ............................. TGGGTTTTGGTAATACCCTTTACGAAAGTTAC 1135802 29 100.0 32 ............................. TCATCCAATCGAGTTATCTTTGCCACTCTTAG 1135741 29 100.0 32 ............................. GCTATACGGGGTCGGTCGCTGGTTCAAATCCA 1135680 29 100.0 32 ............................. GCGGTGTTGTTTTGGTCGCTAATGCTAACCGC 1135619 29 100.0 32 ............................. TTAGGCACCAACTGCAATAGCGTGGCGTAGAG 1135558 29 100.0 32 ............................. TAATTTGCCATAGCAAAAAAAGACGCCATAGC 1135497 29 100.0 32 ............................. CTAAATCTGCAGTATCCGGATCTTCCAACCAA 1135436 29 100.0 32 ............................. CCCACATGCTTTCACCTTTGCACGCTACTTTT 1135375 29 100.0 34 ............................. CGTTTTAGCTTTAACCTCAGACGGAGCGTCACCC 1135312 29 100.0 32 ............................. CTGGTTCATCCTATCGGCAAATCCGTCTATTT 1135251 29 96.6 34 ............C................ TACAAATCTGACCGAATATCCCATGATGCAAGAC 1135188 29 89.7 32 .......T....CA............... CACCAACGATGAGAATGTTTTCATTCGGTAAT 1135127 29 93.1 32 ............CA............... AACCAGGAGCACCATGAAATATTGACGTTGCC 1135066 29 100.0 32 ............................. CTCATATTCGCATTTAGGGCATTGCTTACCTG 1135005 29 96.6 33 ...C......................... CTCGCCCTGCCTGTAGAACCTATATCCAGTTGC 1134943 29 93.1 32 ............CA............... CCGCAACGAATGCGGCAATGTTCAAAACGAAC 1134882 29 93.1 32 ............CA............... CCAATTCGAGCAAGTACCAGGGTGTTAGGTAA 1134821 29 89.7 174 ............CA..............T GAGTTATTCAGGTCTGAATCATGTGCTGTATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTTAGCAGGCTGCGAAACGGTGATGACTCCAGACTTCCTGTCTTTCGCCCTTCGGGTCAGCAGAGCTGTTCAAAAATATTCCAGATATTTTTGTCGGTCCTA 1134618 29 75.9 0 C.TCG.......C............C.A. | T [1134609] ========== ====== ====== ====== ============================= ============================================================================================================================================================================== ================== 22 29 96.7 39 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : AAGAAGCCAGAGCACACAGCGTTATTTGTGAACTAGATGGCGAAGCAATCGGGTTTGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGTCTTTATCTTGAAGACTTATATGTATCACAAGATAAGCGCGGTGTTGGTGCAGGTAAAGGGATCATGAAATATCTCGCAAGACTTGCACTACAAAAGGATTGCGGTCGCTTTGAGTGGGTGGTACTTGACTGGAACAAACCATCAATCGACTTTTATGAAAGCATCGGTGCTAAAGCACAAAACGAGTGGATTATTTATCGCCTAACAGGACAGGAACTCATCGATTTTGCTGAGCAAGTATAGTGAAGTTTATTAGTCTGTTGGCTATACATTATTTCAAGAGAAACCCCGATCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAAAATTGCAATGGTGATTTTTGTTAATAGAAACAGTGATATATCTTTAGA # Right flank : TAGAACATTTTAGTAGGAAAGAGGCGGTGGACAGCTTGGCTGGAAGTGGAGACAGGGTGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCATAGTTGATTATTAATCTACCATCAAAAAAATGCTAGCGTGATTTCACTGTCAGTTTGTCTCAGGTCAAAGACTTACTTTGTTTGTTTTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATTTTAGATATATTGAAGCGGTATTGTTTTGGCAGGGAGAAATCCAGACCGGTACTTTCCAGAGCAAATTTAAGCTTTCAAGGCCCAGCGCACGGCGTTATGTCACCGACTTTATTGAGCGTTATCAGATTGCCGCAAGCTATAATGAGTCTGAAAAAGCTTATGTGCTGGCAAGCCCCTTTACACCTAATTATATCTCTCAGGATTTTACTGAGTATACTAGTCTCAC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.62, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1719646-1718780 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047240.1 Pseudoalteromonas sp. M8 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1719645 35 100.0 34 ................................... CGGTGTATTTTACTACACCTGGCGCCATTTCATT 1719576 35 100.0 33 ................................... ATATCCCAGATTTTGACTTGTCTCCCCTGTTGT 1719508 35 100.0 34 ................................... TCTCACATAGTGAGAGCCCCTTCTCTAGTATTGC 1719439 35 100.0 33 ................................... CTAGTTTCACCAGCGCCAACCACATTTAACTGT 1719371 35 100.0 34 ................................... CTATTGTTAGAGATCACGTTAATACCGCCATTAG 1719302 35 100.0 33 ................................... AACCGGCATTGACTTGCTCCCAAGAGCTAGCAG 1719234 35 100.0 35 ................................... ATTGTAGGCTCCATGGAGGAACCATTCAGGGAATG 1719164 35 100.0 34 ................................... CGTATGAGGAGAATGCCCATACGGGTCATTCTCC 1719095 35 100.0 38 ................................... CTCTTCTAGACGTTTTTTTCTTGCTATGGCAGCTGCCA 1719022 35 100.0 35 ................................... TGTTAGAGGTGTTAGCTTGTCTACCAACTCTTGAC 1718952 35 100.0 33 ................................... CGGCAGTAGTTGCGGCTTTTTTTAGCTCACCAC 1718884 35 100.0 35 ................................... GTAGTACGTCGCACAGTTGTTCCATAAGAGGTGCG 1718814 35 74.3 0 .........................TTGAA.CCCG | ========== ====== ====== ====== =================================== ====================================== ================== 13 35 98.0 34 GTTTGGAGATACCCCGTTTAATAGGGGATTAAGAC # Left flank : TAAAAATAAGCATTGAAACTTCATAAAGTTAGCAAGATTGTATACAAGTTCCTATTTTATACTGTGCACAAGTATTTAGTTAGTCTAAAAGCATACACAATGAGCTATATTTGAGTTATTAAAAACCAATCAACATAACCAAAAAGAATAAAAGGTTTACACACTTTTTACCTTCTAATGCACTACACTTGCGGTTATCCACAAAATTCGACCACATAAAACTTGCTCACTTTATAAGCTGTGGACTGTAATCGACTTTGCTCTTTAAAAACATCATGTTATCACTGTACCCATGACGTAATATGACAAACTCATCGGAACAGACAAAAACGCTAAAAACCGCACGTTCTGAAGCCATTGAACTTTATCGGTTTTATGCAATAGCCCGTAAGCTAAATCGCACATATGTCAGTAGCTATTGACTATTTTAATAACTCTGGTAAAACTATGTGTTATCCACCGCTGCAGGCCGCGCCACACAAAGCGTCGACACTGTAAGG # Right flank : TCTTGAGACAAGCGAGTGCTCGCAGCTTGGCTAGGGTTGAAACTGAGGCCTTGGACGGCCGAAGCGGTTAGCGCTTCATGGACGGATCAATGTGCACGGCCTAAAATTGGAAAGCCACTTTAAGATAACTGATTTAATAGATTCGCGACATAAAGTCGCTGCTACGAGTTGGACGGCCGAAGCGCTTAGCGCTTCATGGGCGGATCAATGTGTACGGCCTAAAACTGTAAAACCAATTAAAGATATCTAATCTAAGAGATTCGCGACGTAAAGTCACAGCTACGCCAGCCCCGTAGCAGCGGGTTTATCCCGCGATAGGAACTGTAAAACCAATTAAAGATATCTAATCTAAAAGATTCGCGACGTAAAGTCGCTGCTACGAGTTATACGCCCTTCCCCCAACAATGCGCTGATGCCATAGCTTTTGATCTGTACATTATCGCTAGCCTTAGGCTCTCATCAAAATCCCTCATAGCTAGCGGCAAGTTAACTTTATGAAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGAGATACCCCGTTTAATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1733629-1733404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047240.1 Pseudoalteromonas sp. M8 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1733628 31 100.0 33 ............................... TGAAATGAGCTTTAAAGAGTATGAAGATCACAT 1733564 31 100.0 35 ............................... CGCCAATTAGCCGTTCGATGTCTTTAGGCGCTGAC 1733498 31 100.0 33 ............................... CATGCAGTCTTAACTACATTGGCTAGGGATGAC 1733434 31 96.8 0 .........C..................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 34 GTTACACCCTGCACACATAGGGGATTGAGAC # Left flank : AATAGGGGATTAAGACATTTTAGAACCCTAGTTTGAACTGGATATAGGTGTTTGGAGATACCCCGTTTAATAGGGGATTAAGACGCCAGCTTAACTGCCTCGTAGTCATAATGGCTTTGTTTGGAGATACCCCGTTTAATAGGGGATCAAGACGTCAGGCATTACAGTAACCCTCTCAGCATATAGTTTGGAGACACCCCGTTTAATAGGTTGAAACCCGTATTGAGACAAGCGAGTTAAAAGATTCGCGACGTAAAGTCGCTGCTACGAGTTATGCCCCTCCCCCTCAACAATGCGTGTATGATCCAGCCTTTGATCTTATTATCGCTAGCCTTAGGTTCTCATCAAAACCCCACGCTGCTAGCGATAAGTTAACTTGATGAATACCTTGTAGTTTACAAAATGACCCGTGGCACAAGATCAAAAATAGCAGTACAATGACCATATCTAGCGGAAAATCGCTGAATTGCTCTTTAAAAATAGTCGCTTTGACGCTGGCC # Right flank : TTGCGGCCTTTCAGCCAGTCGTGCATAAGCACGCCGTTTGGAGATACCCCGTTTAATAGGTTGAAACCCGTCTTGAGACAAGCGGGTTACGAGAGTCGCGACGTAAAGTCGCTGCTACGACTTGGACGCCCGAAGCGGTTAGCGCCTCATGGATCAATCAATGTGCACGACCTAGAACTGGAAGGCCACTTTAAGATATCTAATTTAAAAGAGTCGCGACCTAAAGTCGCTGCTACGAGTTGTATGCCCTGCCCTCCAACTTTCCCGAGTGGCTTTATTATTTCGTTGCCCTAAGCAGCTAAACTTATTAGTATTTAATAAAAATATAAAGTCTAGGAAGAAAAAATGAGCATCAAATGGATTTACGCGCTGCCAGTATTTATTGCTATTTTAGGCGGTAGCATCTCTGAAATTGGATTAAGATTATCAACTAACTTTGTCCCTGCAGCATTCTCAGTACCGTTAGCCATAATCGCGTTACTATTTCTATTTTTTTATCA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACCCTGCACACATAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 1734558-1733909 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047240.1 Pseudoalteromonas sp. M8 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 1734557 35 100.0 33 ................................... CTACAGTTACTGTTGAGTGGTCACCAATGGTAA 1734489 35 100.0 33 ................................... ACCTTCTTTTTAGACGGCTTTGGTTCGTAGTCA 1734421 35 100.0 32 ................................... CAAAGTTCTCCTTTAGAAGACCATTTAGATGA 1734354 35 100.0 33 ................................... CTTAGCCGCGCTAACTAAGGCTTGACTATTGCT 1734286 35 100.0 36 ................................... ACATTGATCCTGCCATAAATATGACATATACATCCC 1734215 35 100.0 33 ................................... AATACTCAACGGTTACAATAAACACAGAGGCCA 1734147 35 100.0 33 ................................... ATTTTAGAACCCTAGTTTGAACTGGATATAGGT 1734079 35 100.0 34 ................................... GCCAGCTTAACTGCCTCGTAGTCATAATGGCTTT 1734010 35 97.1 32 .............................C..... GTCAGGCATTACAGTAACCCTCTCAGCATATA 1733943 35 71.4 0 .........C...............TTGAA.CCCG | ========== ====== ====== ====== =================================== ==================================== ================== 10 35 96.8 33 GTTTGGAGATACCCCGTTTAATAGGGGATTAAGAC # Left flank : TAACAATAAGCATTGAAATTTCATAAAGTTAGCAAGATTGTATACAAGTCTCTATTTTATACTGTGCACAAGTATTTAGTTGGTCTATAAGCATACACAATGCGCTATATTTGAGTTATTAAAAACGAATCAACATAACCAAAAAGAATAAAAGGTTTACACGCTTTTCACCTTCTAATGCACTACACTTGCTGTTATCCACAAAATGCGATCACATAAAACTTGCTCACGTTATAAGCTGTGGACTGTAATCGATTTTGCTCTTTAAAAACATCACATTATCACTGTACCCATGACGTAATATGACAAACTCATCGGAACAGACAAAAACGCTAAAAACCGCAAGTTCTGAAGTTATTGAACTTTATCGGTTTTATGCAATAGCCCGTAAGCTAAATCGCACATATGTCAGTAGCTATTGACTATTTTAATAACTCTGGTAAAACTATGTGTTATCCACCGCTGCAGGCCACGCCACACAAGGCGTCAACACTGCAAGG # Right flank : TATTGAGACAAGCGAGTTAAAAGATTCGCGACGTAAAGTCGCTGCTACGAGTTATGCCCCTCCCCCTCAACAATGCGTGTATGATCCAGCCTTTGATCTTATTATCGCTAGCCTTAGGTTCTCATCAAAACCCCACGCTGCTAGCGATAAGTTAACTTGATGAATACCTTGTAGTTTACAAAATGACCCGTGGCACAAGATCAAAAATAGCAGTACAATGACCATATCTAGCGGAAAATCGCTGAATTGCTCTTTAAAAATAGTCGCTTTGACGCTGGCCGTTACACCCTGCACACATAGGGGATTGAGACTGAAATGAGCTTTAAAGAGTATGAAGATCACATGTTACACCCTGCACACATAGGGGATTGAGACCGCCAATTAGCCGTTCGATGTCTTTAGGCGCTGACGTTACACCCTGCACACATAGGGGATTGAGACCATGCAGTCTTAACTACATTGGCTAGGGATGACGTTACACCCCGCACACATAGGGGATT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGAGATACCCCGTTTAATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1735330-1735103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047240.1 Pseudoalteromonas sp. M8 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1735329 31 96.8 34 .........T..................... GATGGTATATCTGGGATCTGCAATTGAGTATTTG 1735264 31 100.0 34 ............................... GTGTTGTCATTAATTCTTTGTATGGCTGGCTCTA 1735199 31 100.0 35 ............................... ATCTTGGGTGCTCCTGAGGAGTATTGCAGGTTTAA 1735133 31 96.8 0 ............................T.. | ========== ====== ====== ====== =============================== =================================== ================== 4 31 98.4 35 GTTACACCCCGCACACATAGGGGATTGAGAC # Left flank : TTCGGTCTTTCGTCGTCCATCTTGAGACAAGCGAGTTAAGAGATTCGCGACGTAAAGTCGCTGCTACGACTTGGACGGCCGAAGCGGTTATCGCTTCATGGATGAATCAATGTGCACGGCCTAGAACTGGAAAGCTTTATAGTTTATACAGCGATTTAAAGCTGAGCCGTAATACATCCCTGTAGCTGGCTCCATCAGGCATCCATGCCTTCACCTCCTCAAAACAAGCGAGTTAAAAGAGTCGCGACGTAAAGTCGCTGCTACGAATTATGCACCCTCCCCCCTCAACAATGCGTGTATGATCCAGCCTTTGATCTTACTTTATCGCTAGCCTTAGGCTCTCATCAAAACCCCACGCTGCTAGCGACAAGTTAACTTGATGAATACCTTGTAGTTTACAAAATGACCCGTGGCACAAGATCAAAAATAGCAGTACAATGACCATATCTGGCGGAAAATCGCTGAATTGCTCTTTAAAAATAGTCGCTTTGACGCTGGCC # Right flank : AGTGGCTACAGCTTCGAACTATTGAGTAACCCAAACCTACTGACATAACAATAAGCATTGAAATTTCATAAAGTTAGCAAGATTGTATACAAGTCTCTATTTTATACTGTGCACAAGTATTTAGTTGGTCTATAAGCATACACAATGCGCTATATTTGAGTTATTAAAAACGAATCAACATAACCAAAAAGAATAAAAGGTTTACACGCTTTTCACCTTCTAATGCACTACACTTGCTGTTATCCACAAAATGCGATCACATAAAACTTGCTCACGTTATAAGCTGTGGACTGTAATCGATTTTGCTCTTTAAAAACATCACATTATCACTGTACCCATGACGTAATATGACAAACTCATCGGAACAGACAAAAACGCTAAAAACCGCAAGTTCTGAAGTTATTGAACTTTATCGGTTTTATGCAATAGCCCGTAAGCTAAATCGCACATATGTCAGTAGCTATTGACTATTTTAATAACTCTGGTAAAACTATGTGTTA # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACCCCGCACACATAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 5 1737197-1736610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047240.1 Pseudoalteromonas sp. M8 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 1737196 35 100.0 34 ................................... TTAAGTGATATTAAAACTTACCTTGATTATAGGC 1737127 35 100.0 33 ................................... TTCGCGATTTCAAAATAATCACCCACAACTTGA 1737059 35 100.0 34 ................................... CCAAAGGAGAACGTGTTATTGTCGTGATTGTAAA 1736990 35 97.1 34 ..........................A........ TCATCTTGGATTTTCTTATGAATGCCAGCTAGGT 1736921 35 100.0 35 ................................... AAATTGATGCCGGGCGGTGGCTAAGCTCGTTGTGG 1736851 35 100.0 33 ................................... AGTGTAGCCATCCTCAATTTCAAGCAGGTGTTC 1736783 35 94.3 34 ...T...................A........... GAGTAAAAAGCTCCACAGCGCTTTAAGTTGATCA 1736714 35 94.3 35 ...T.................T............. GCATTATTAATTGAACATTGTCCATTACTGTAAAT 1736644 35 68.6 0 ...T.................T...TTGAA.CCCG | ========== ====== ====== ====== =================================== =================================== ================== 9 35 94.9 34 GTTCGGAGATACCCCGTTTAACAGGGGATTAAGAC # Left flank : TAACAATAAGCATTGAAATTTCATAAAGTTAGCAAGATTGTATACAAGTCCCTATTTTACACTGTGCACAAGTATTTAGTTGGCCTATAAGCATACACAACGAGCTATATTTGAGTTATTAAAGACCAGTCAACATAACCAAAAAGAATAAAAGGTTTACACGCTTTTTACCTTCTAATGCACTACACTTGCGGTTATCCACAAAATTCGACCACATAAAACTTGCTCACGTTATAAGCTGTGGACTGTAATCGACTTTGCTCTTTAAAAACATCATGTTACCTCTGTACCCATGACGTAATATGACAAACTCATCGGAACAGACAAAAACACTAAAAACCGTAAGTTCTGAAGTTATTGAACTTTATCGGTTTTATTCAATAGCCCGTAAGCTAAATCGCACAAATGTCAGTAGCTATTGACTATTTTAATAACTCTGGTAAAACTATGCGTTATCCACCGCTGCAGGCCACGCCACACAAGGCGTCAACACTGCAAGG # Right flank : TCTCGAGACAAGCGAGTGCTCGCAGCTTGGCTAGGGTTGAAACTGAGGCCTTGGACGGCCGAAGCGGTTATCGCTTCATGGATGAATCAATGTGCACGGCCTAGAACTGGAAAGCTTTATAGCTAGATACCCCGTTTAATAGGTTGAAACCCGTCTCGAGACAAGCGAGTGCTCGCAGCTTGGCTAGGGTTGAAACTGAGGCCTTGGATGGCCGAAGCGGTTATCGCTTCATGGATGAATCAATGTGCACGGCCTAGAACTGGAAAGCTTTTTATCTAGATACCCCGTTTAATAGGTTGAAACCCGTCTCGAGACAAGCGAGTGCTCGCAGCTTGGCTAGGGTTGAAACTGAGGCCTTGGACGGCAGAAGCGGTTAGCGCTTCATGGACGAATCAATGTGCACGGCTTAAAACTGGAAGGCAGTAACCCATGCCTCGACTTTGAAGCGTTTAAAAACTCAGTGGAAATACCTCCCTGTAGTTTGGTTCCATCAGGCATCC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGGAGATACCCCGTTTAACAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 1738100-1737742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047240.1 Pseudoalteromonas sp. M8 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1738099 31 100.0 35 ............................... CATCGAAATCTTGATAGTACCCAGATGCGTTTAAC 1738033 31 100.0 34 ............................... AGGAAAGGGTTTTAAGCATCGATGGCATTGCCTA 1737968 31 100.0 34 ............................... CAATCAACACCTGGTAAATACTGCTTGGTTGCTT 1737903 31 100.0 34 ............................... AGGCGTTAAATCTGTGATAGCGTTAAGCGTTGGT 1737838 31 100.0 35 ............................... CCACCCAATTGTGTCAGCTTTACTTATTGCAAAAT 1737772 31 93.5 0 ....................A.......T.. | ========== ====== ====== ====== =============================== =================================== ================== 6 31 98.9 35 GTTACACCCCGCACACATAGGGGATTGAGAC # Left flank : CGCTTCATGGACGAATCAATGTGCACGGCCTAAAACTGGAAAGCTTTATAGTTTATACCGCGATTTAAAACTGAGCCGTAGTACATCCCTGTAGCTGGTTCCATCAGGCATCGCCCTCACCTCCTCAAAACAAGCAAGTTAAAAGAGTCGCGACGTAAAGTCATAGCAACACCAGCCCCGTAGCAGCGGGTTTATCCCGCGATAGGTACTGTAAAACCAATTAAAGATATCTAATCTAAAAGATTCGCGACGTAAAGTCGCTGCTACGAGTTATGCCCCCTCCCCCTCAAAAATGCGTGTATGATCCAGCCTTTGATCTTATTATCGCTAGCCTTAGGTTCTCACCAAAATCCCACACAGCTAGCGGCAAGTTAACTTGATGAATACTTTGTAGTTTACAAAATGACCCGTGGCACAAGATCAAAAATAGCAGTACAATGACCATATCTAGCGGAAAACCGCTGATTCGCTCTTTAAAAATAGTCGCTTTGGCGCTGGCA # Right flank : AGTGGCGACAGCTTCGAACTATTGAGTAACCCGAACCTACTGACATAACAATAAGCATTGAAATTTCATAAAGTTAGCAAGATTGTATACAAGTCCCTATTTTACACTGTGCACAAGTATTTAGTTGGCCTATAAGCATACACAACGAGCTATATTTGAGTTATTAAAGACCAGTCAACATAACCAAAAAGAATAAAAGGTTTACACGCTTTTTACCTTCTAATGCACTACACTTGCGGTTATCCACAAAATTCGACCACATAAAACTTGCTCACGTTATAAGCTGTGGACTGTAATCGACTTTGCTCTTTAAAAACATCATGTTACCTCTGTACCCATGACGTAATATGACAAACTCATCGGAACAGACAAAAACACTAAAAACCGTAAGTTCTGAAGTTATTGAACTTTATCGGTTTTATTCAATAGCCCGTAAGCTAAATCGCACAAATGTCAGTAGCTATTGACTATTTTAATAACTCTGGTAAAACTATGCGTTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACCCCGCACACATAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 7 1738681-1738982 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047240.1 Pseudoalteromonas sp. M8 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 1738681 25 100.0 43 ......................... CAAGCAGCAAAAGCTTGTCGCCAGCGATATTTAGTCTTAATCC 1738749 25 92.0 44 ...G.....T............... TTAGCTCAACAGAAATGCAGCTTGAGCAAGTCGCGTCTTAATCC 1738818 25 100.0 47 ......................... CGGTCACGTTATACGAAAAGCAGTTCTAAGTCCATTCGTCTTAATCC 1738890 25 92.0 43 ..............GG......... TCTCAAAAATAGTAGAAATAGTAGATCTAGAAGGTCTTAATCC 1738958 25 88.0 0 .........T....GG......... | ========== ====== ====== ====== ========================= =============================================== ================== 5 25 94.4 44 CCTATTAAACGGGGTATCTCCAAAC # Left flank : CTTGTGCCACGGGTCATTTTGTAAACTACAAAGTATTCATCAAGTTAACTTGCCGCTAGCTGTGTGGGATTTTGGTGAGAACCTAAGGCTAGCGATAATAAGATCAAAGGCTGGATCATACACGCATTTTTGAGGGGGAGGGGGCATAACTCGTAGCAGCGACTTTACGTCGCGAATCTTTTAGATTAGATATCTTTAATTGGTTTTACAGTACCTATCGCGGGATAAACCCGCTGCTACGGGGCTGGTGTTGCTATGACTTTACGTCGCGACTCTTTTAACTTGCTTGTTTTGAGGAGGTGAGGGCGATGCCTGATGGAACCAGCTACAGGGATGTACTACGGCTCAGTTTTAAATCGCGGTATAAACTATAAAGCTTTCCAGTTTTAGGCCGTGCACATTGATTCGTCCATGAAGCGCTAACCGCTTCGGCCGTCCAAGGCCTCAGTTTCAACCCTAGCCAAGCTGCGAGCACTCGCTTGTCTCGAGACGGGTTTCAA # Right flank : CCCTTGCAGTGTTGACGCCTTGTGTGGCGCGGCCTGCAGCGGTGGATAACATATAGTTTTACCAGAGTTATTAAAATAGTCAATAGCTACTGACATTTGTGCGACTTAGCTTACGGGCTATTGCATAAAACCGATAAAGTTCAATGGCTTCAGAGAGAGTGGCTTTTAGCGTTTTTGTCTGTTCCGATGAGTTTGTCATATTACGTCATGGGTACAGTGATAATGTGATGTTTTTAAAGAGCAAAATTGATTACAGTCCACAGCTTATAACGTGAGCAAGTTTTATGTGGTCGAATTTTGTGGATAACAGCAAGTGTAGTGCATTAGAAGGTAAAAAGCGTGTAAATCTTTTATTCTCTTTGGTTCTGTTGATTGGTTTTTAATAACTCAAATATAGCGCATTGTGTATGCTTATAGACCAACTAAATACTTGTGCACAGTATAAAATAGAGACTTGTATACAATCGTGCTAACTTTATGAAATTTCAATGCTTATTGTT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTATTAAACGGGGTATCTCCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //