Array 1 625-107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLPT010000238.1 Escherichia coli strain KG-45 NODE_238_length_766_cov_3.945227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 624 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 562 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 501 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 440 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 379 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 318 29 96.6 32 ...............A............. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 257 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 196 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 135 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAC # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26663-25474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLPT010000045.1 Escherichia coli strain KG-45 NODE_45_length_35236_cov_11.830158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26662 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 26601 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 26540 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 26479 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 26418 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 26357 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 26296 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 26235 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 26174 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 26113 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 26052 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 25990 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 25929 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 25868 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 25807 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 25746 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 25685 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 25624 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 25563 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 25502 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //