Array 1 1458716-1456227 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900388.1 Salinispora vitiensis strain DSM 45548 Salpac2DRAFT_Scaffold1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1458715 37 100.0 36 ..................................... CTCGACCACTCCACGGCGGAGTGGCGGACCGCGCGC 1458642 37 100.0 37 ..................................... CACACCGACGCCGGCACCACCGCAACCCGCGTCGTGC 1458568 37 100.0 35 ..................................... TTGCGCAGCCAGTGACTGGGGGCGTCTGGGTTGGT 1458496 37 100.0 35 ..................................... GACGAGGTCCGCGAAACCCGGCGCCTGCTCGCCGG 1458424 37 100.0 39 ..................................... AACACCGCGCGCCGGGAGGACATGCCCGAAGAGGTTCGG 1458348 37 100.0 40 ..................................... CGGATCGGGGCCCTGATCGGGTCACCCCGCGCCGACCCCA 1458271 37 100.0 37 ..................................... TGCAGGTCGCCGGAGTGCTGCTCGGCGCCGGCCTGGC 1458197 37 100.0 35 ..................................... AGCGCCATCTCCCAGATGACGCCCCCCTCGCCCTT 1458125 37 100.0 40 ..................................... GGGTCATCTCGCTGAGAGGGTCGCCGAAACACCCCAACGT 1458048 37 100.0 35 ..................................... AGCGCCATCTCCCAGATGACGCCCCCCTCGCCCTT 1457976 37 100.0 40 ..................................... GGGTCATCTCGCTGAGAGGGTCGCCGAAACACCCCAACGT 1457899 37 100.0 37 ..................................... TAGGAGAACCACTCCAACCCACTACAGGCTCACTCTC 1457825 37 100.0 37 ..................................... TTATCCGCTGAGTTTTCGGCGGCCTATGGCACCGGGT 1457751 37 100.0 36 ..................................... AAGTGGCTGGTCGCCGCGGACCTGGCGGTGCCGGCC 1457678 37 100.0 37 ..................................... CGGAGGTCAGAGTCGATGTAGCCCAGCAGGGTCAGCA 1457604 37 100.0 37 ..................................... CGTGTCGCCTGGCATCGGATTACTAGACGACTCCGCC 1457530 37 100.0 36 ..................................... CCGGCGCGTTGCGGGGGTGCCCAGTTGCCCTGCCCG 1457457 37 100.0 39 ..................................... GTCTTAGGCGGCCGGTGTGACAACCGGCGTTACGCAACA 1457381 37 100.0 37 ..................................... GGGTAGGGCCCTGGGGCGAGTAGCCGGGCGAGGACGT 1457307 37 100.0 39 ..................................... ACATCGCCTGGGTGATGGAGAGAGACGGTACGGCGCGGC 1457231 37 100.0 37 ..................................... GCGGACAAGCGCGGCGGCGCGGGCCTTGAGCGTGCCA 1457157 37 100.0 37 ..................................... TGCGCCGGCGGTGTCCCGTCGGTGTCGTACAACGCAG 1457083 37 100.0 38 ..................................... AATGTCGGCCGTGGGGGGTGGGACCGGGCTGCGCGGCG 1457008 37 100.0 38 ..................................... CTGCGGGGCTTCGGCGTGGTTGCGGCGATGGTGCGGGC 1456933 37 100.0 36 ..................................... GACAATGGAGCGGGCTTGGGCCAGGGTTTCCGCGAA 1456860 37 100.0 41 ..................................... CCGGGGGACGAGAATCAGCGCGAAGGCGTCAAGAAACTGGG 1456782 37 100.0 39 ..................................... CCTTCGAGGGGACGGAGGACACATGAGCAGGCGGGACTG 1456706 37 100.0 35 ..................................... CTTGCGTCGGTGTGCATCCGGCCAAAGATCCAGTA 1456634 37 100.0 39 ..................................... CACCCGGAGATCCCGGGTACCAGTGACGGGCTGATACCG 1456558 37 100.0 36 ..................................... AGGCAGTCGATCGTGCGCCGGAGCGTGCCCTCCACG 1456485 37 100.0 38 ..................................... ACCTGCTCCAATGACGTGTGCAATCGGCCGCGACGGGC 1456410 37 100.0 38 ..................................... AGTACAAAGCGGGCGGTGATTGCGCAGGCCAAGGCCCT 1456335 37 97.3 35 ....T................................ CTATGTCTCCCGGGGGCATGCCCCATCGCCGTTGA 1456263 37 94.6 0 ..........................C.........A | ========== ====== ====== ====== ===================================== ========================================= ================== 34 37 99.8 37 GCTGCGCCCGGCCTCCGCGCTGGGCGAGGATCGCAAC # Left flank : TGCTGCCACTCGTGCAGGCCCGACTGCTCGCACGCCACCTTCGTGGAGACCTGCCCTCGTACCAGCCATGGACGGTGAACTGACCCATGGACCTTCTCGTCACCTACGACGTCGAAACAGCCACCCCGAAGGGCAACGCCGACTACGCAAGGTCGCCAAAATCTGCGAAGCATACGGTCATCGCGTACAGAAATCTGTATTCGAGGTTGTCTGCCGCGAAACCGACAAAGTGCGCCTCGTTGGAGCCCTCCAGGAAGCCATCAACCCAGCCCAGGACAGCATCCGCATCTACCGGCTACCAGCCCACGCCCTCGACGACGTCGAACACCTCGGCAGGCCGCGCCAGACCGATCCACGGGGGGCGTTGGTGATCTAGGAACCCCAAGCTGACGCGAGAAGCCTAGGAGGTTCCGAACCCAAAAAAATGACGAATTGGACAAATCGGACTGCGGTCAATCAACTTTACATCACTAAACTTCTATTCTTGCTGCTCACGAACC # Right flank : CGGCTCGAGTGGGACGGAGATAGGGTGCTCCCTGCAGCTGCGCCCTCGGCGCCAGCGACTGACCACCCCCGACCAGTCCGCCGGAGCTTCGGCGCCGCCTTACCGTGAGGCCGTAGTTCCGGGGGAGGGGTCGGCTTGAGGGTGGGCCGGAGAGAATCCACTCGTTACCTTCTGTGCGTGGACGTTGACGACCTGTTCGCCGGCAGTGGCGGTCTCGCTTCCCTCCTTTCGCCGACCGACTGGGCCGCGATGTGCTCGCTCGGCTCCCGGTGCCGCATGGCTGCCGACTACCCGTTATTCCGACAGGGCGACGAGGGGGAGCACGTTTACGTGATCCTCAGCGGTGCGGTCAAGGTAGTTCGGGGCGAAGCAGCGGGCAAGAGCGCGATCCTGACGATTCGTGGGGCTGGCGACGTCGTCGGCGATCTGGCGGTGATGGATGGTGGCCGCCGCTCCGGCACGGTGTCGACGCTGACCCCCATGGTGGTCCGGGTGGTACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCTCCGCGCTGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.00,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1556723-1557426 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900388.1 Salinispora vitiensis strain DSM 45548 Salpac2DRAFT_Scaffold1.2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1556723 37 100.0 37 ..................................... TGCCATCACAACCTCCTCAGCCCGTCCAGCACGGACC 1556797 37 100.0 36 ..................................... GCAGTGCTTGACATCGTGTTGTGGGGTTGCCAGCCT 1556870 37 100.0 37 ..................................... CGCCTACGCTCGCGACAACCAGCCCGATACTGCCGCC 1556944 37 100.0 38 ..................................... TCGCCGCGGATACACGCACCTACCGGGCCTTCGCGCCT 1557019 37 100.0 36 ..................................... GGACAGCAGGCGGCAGAGATCTTCCAGCAAGTCGCG 1557092 37 100.0 38 ..................................... AGGTGCCGCAGCGCCGAACGGATCCGCGACCGAGACCG 1557167 37 100.0 38 ..................................... CACGTGCCCTGCCCTAGTGGTGCGCCCTGGGCGGCCAT 1557242 37 100.0 35 ..................................... GGCGATCTACTGTGAGTGACCCGGCCACTACCCGG 1557314 37 100.0 39 ..................................... GTCGAGCTCGGCGACCTGGTCGGCCTGGCGCCGGTCAAC 1557390 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 100.0 37 GCCGCAATGGAGACCGACCGCTACGGGCCGGTGAAGG # Left flank : ACACCGGCCATCGCGGCGCGTTGACGGCCGGTCACGCCACTTGTAGAACCATGACTCGGACACCCCCAACGCTCGGCAGGCGATCACGTGCGGCACGGAATGCTCGGTCCTCTGGGAAGCGATGAAGGCGGCCACGCTCACCGGCCCGTCGCCTCTTTGACCCACAGGACCACGGATCGCTTGAGAACATCACGCTCCATCGCCAGCTCGGCGTTCTCCCGCCGCAACCGGGCCAGCTCCGCCCGCTCGTCCTCAGTAAGCTGCCCGGCAGCGGCCTCACCGCGCGTCTCACGGTCCCTCTTCACCCAGTTGGCCAGGGTCCCGCTGTTAATCCCCAGATCACGGGCGACCTGTGCGATCGACTTACCCGTCTCCCGCACGATGCGCACCGCGCCCGCGCGGAACTCCGGATCGAACTGGCGTCTCGTCTCAGCCATGAACCTCTATCCCTCAAGCTCTGGCCTCCACGCTACGAGGGGAAGGGCATTCCCGGTTACGCG # Right flank : GGGCTCGCGAGCAGCGAGGATAGCCACCCATCATTGGCTAAACACTGACCGCCTGCCTGAAATGCTCCTTTGGCCCCCATTCTGAAGCTCGGAACCTACGGCGCATGGAGCACCCACTTCAGGTTCCTAGATCAACTGCAAGGTGCTCACAGAAAGCGAGCGCACGTTTGTGAAGTTCTCAAGGTTCGAGCCCCGGGCCAGACCGATTGTGATTCACGAGCTGCCATTGAACTGATCTCAGCAAGGAACGGACGCTGAGTCCATAGCCCCGACACCGCGTCAGGCCTGCGCGGGAGGTCGCGGCACAGAACTTCTGGGTTGGCCGACGCAACCGCCTTCTTCGCCCCGCCCTTGGACGCCACCCTCGCCCCTTCCCCCGGTTGCCGTCCGAAAATTCTATTGGTGGGCCGGGTAGGCGACAGACTATGCCCCGCCTGGCTCGTGGGCCTGACGTATCCGATCTTCGTCCCGATGGTTGACCGCAGAATATGGTTGGGCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGACCGACCGCTACGGGCCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 1566221-1565366 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900388.1 Salinispora vitiensis strain DSM 45548 Salpac2DRAFT_Scaffold1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1566220 37 100.0 37 ..................................... CGCTGTGACGCTCCCTGCCACGTGCACCACCACCGTT 1566146 37 100.0 35 ..................................... CAGTCCAGGTCGATGGTGGTTTCGGCGTCGAACAG 1566074 37 100.0 38 ..................................... CCGACCTCCGGCTCAACGGCCGGATCCGACCAGGTCGT 1565999 37 100.0 38 ..................................... AGTTTCCGGCTCGCCGACAACCCGACGCTGCCGACCGC 1565924 37 100.0 35 ..................................... TGCGGCAAGAGCTATGTGCACGACCTCGAAACGGG 1565852 37 100.0 37 ..................................... GAGACGGTGTCCTGCCACGGGGTAGCCAGCCGTGGCA 1565778 37 97.3 36 .........................T........... GTTACCGGCGCCACGGTTCCGGGCTCGCCGAGTACG 1565705 36 97.3 37 ........-............................ TGCGAAGACCCCAACGGGGACGAGGATGCTGCCCTGC 1565632 37 97.3 41 .......T............................. AAGCCCAACGGTACGGCCTCCGTGACCGCGGTCGGCTTCGG 1565554 37 91.9 39 .......T...T........C................ CTTGTGGTGTTCCAGCCGGTGGGTGTGGGCGTCCAGGTC 1565478 37 81.1 39 T..C..T......A...T...T.C............. GACGAGCGATGTGGTCTGCGTCCTCCCCGGCATGCCATG 1565402 37 89.2 0 ....T.....T.G............G........... | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 96.2 38 CCTTCACCGGCCCGTAGCGGTCGGTCTCCATTGCGGC # Left flank : CCCGCCAAGCCAACCGCCGATCACAGAACCGGATCACCGTCGTGACCAGCAGCTACCCGACAACGCAATGACCCTGGTCTGTCGCCTACCCGGCCCACCAATAGAATTTTCGGACGGCAACCGGGAGAAGGGGCGAGGGTGGCGTCCAAGGGCGGGGCGAAGAAGGCGGTTGCGGCGGCCAACCCAGAAGTTCTGTGTCGCGACCTCCCGTGCAGGCCTGACGCGGTGTCGGGGCTATGGATTCAGCGTCCGTTCCTTGCTGGGATCAGTTCAATGGCAGCTCGTGAATCACAATCGGTCTGGCCCGGGGCTCGAACCTTGACAACTTCACAAAACGCGCGCTCGCTTTCTGTAAGTACCTTGCAGTTGATCTAGGAACCTGAAGTGGGTGCTCCATGCGCCGTAGGTTCCGAGCTTCAGAATGGGGGCCAAAGTAGCAATTCGGGCAGGCGGTCAGTGTCTAGCCAATGATGGGTGGCTATCCTCGCTGCTCCCGAGCC # Right flank : TGGTCCTTTCGGGGAGTGGATGGGTAGCTGTTGGTCTGTGTGTCGCCGCCGCTCGTACTCGCGGGGGAGGTGTGGGCGAGTAGAGTCGCGCGTCAAGCGAAGGTCGGTCCAGTGCTGCTACCTTCTTCCGGTGTCGCTCAGTCCCGGCTCTGTTTGTGACGGTGCCGTGCTCCGTTGGGGCGATGCAGGTCGTGCGACCTCTTGTGGATCGGATGCATGTCCCTGGCCCTAGGTCAGGGCTCCGATCTTTCTGTCGGCAATCGGACGTAGATTAGATGCAGGTCGCGCGACAGGTATGCAGGAAATTCAGAGTAGATTGACCGTTCGTCAAGGTCCTCGGGTAAGTAGCGATGCGGGTGACCTCCACCGAACTCCGCCCCCTTGCAGGGAGTGTCGATGCCCTCTTTTGAGGCCTTTTTCGAGCAAGCGACCGGTGTGCCTCCGTACGGTTATCAGGCTCGGCTAGCGCGCGATGGTCTACCGGCGGTGGTTCAGGCGCC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCACCGGCCCGTAGCGGTCGGTCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //