Array 1 2781-3084 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWL01000031.1 Bifidobacterium longum subsp. infantis strain UBBI-01 chromosome31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2781 33 100.0 36 ................................. GCGACCCCGCAGGTCATCGCCGCACTCAACGTGGAA 2850 33 100.0 33 ................................. ATCCGCGAAAACCACGCGCTCATCGAAAGACTT 2916 33 93.9 36 ....T..T......................... ATGTAATCATTGTTCATGTCGATGAGAGCATGGATA 2985 33 93.9 34 ....T..T......................... ATGTCATTGAGCATTCCGGTGGCGCTCTCGTATC 3052 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 97.6 35 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : CTGTGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCTGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGACAGTCTTCGGTACTACAACCTCGGGGCGAAGTATTCCTCGAAGATCGAATATCGAGGAAGGCAGCGACACATGCCTGTTGATGGCGTGATGATGCTTTGATGCCGGATTGGTGTGTGCGTGTGGATGTTGGTCGGTGCGAGCCCCAAGCTCTCATGAAGTGCTGGGCTGTTCGCACCACGGTTGAGGACTTTTGAAGACGGTGTATGTTCTTCTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGAGACGCGAGTGGGTTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGCCCGTATCTTGGGATGCGAAGTCCATTCCCGCG # Right flank : TCTTGGGCACCGACCTGCAGACCATTCTCAGCTCGCGTCGCACCCTCACACCATGCAAGGCCGAACCGTCGTCGAGTCGCTAACGTGGTGCGATTGCCGGCATGGAATTGTCTCGCACCGTCTGAGTGGTCTACAATGGCCGCTAATCCAAGTTAGGAGTAGGGCCAGGGGATTAAAGGAATTGAGAATGAAACGCGGAATGACGCAACGTGAGTTAGCCGAAAAGGTTGGCATGTTAGGCGGCAATATCGCGGCTATCGAGTGCGGTAGGCGCTCTGAGGCTAACTTAACCTTAGCCACTGCGATAAAGCTGTGTGATGCTTTGCGTGTGCGTAATCCGCGTAAGTTACTTGATTCTGATTCTGAAACTTCTGCGGATTAAGTAATCCGCTAGGGCTATTGCGCTCTTTACGGGTGTGGTAGTCCACGAAATGTTAATGTTCAGCCGATATGATCGGCGTAAGAGTAAGGAGGTGGCATAGTTGCCGGGAATAAGCAGG # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGTACTCCTCACGGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 114595-118891 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWL01000009.1 Bifidobacterium longum subsp. infantis strain UBBI-01 chromosome9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114595 29 100.0 32 ............................. GTTATACGCCGCGATCACCGGAATATAGCCAC 114656 29 100.0 32 ............................. ATGACATCATCGGGCTTGAGACCGTCGCGCTG 114717 29 100.0 32 ............................. CTCACAACCAACATGTATATCGCGCGCGCCGA 114778 29 100.0 32 ............................. GCCACGGTGACGTCCGTGACGGTTGGGACGAT 114839 29 100.0 32 ............................. CATTCTCGGCCGTCACCAATTATTTCCCCGAA 114900 29 100.0 32 ............................. GATTCAAGGAGTGGATAGATCGGCGTGCGGTC 114961 29 100.0 32 ............................. GACTTACGAGCCACTCACAATCGTCATCCACC 115022 29 100.0 32 ............................. CCTCCCTTGCGCGCGTATTCCGCGAACGTCTG 115083 29 100.0 32 ............................. ACAGTACGGCCACCGCGTCAAGCACATCCGAC 115144 29 100.0 32 ............................. GAACGCCTGTTGGAATCGGAGGTCACGGCCGG 115205 29 100.0 32 ............................. GTCTTACCCGGTATGCCAAAACCAGCCCCGGT 115266 29 100.0 32 ............................. GCGTTCGCGTCGGCGGCACCCATATTAGCCCA 115327 29 100.0 32 ............................. GCTGGAACATCGAACCGGGGTCGAGCGAATCG 115388 29 100.0 32 ............................. GCATGGGATGGCGCTTCCGCGCCGCCTGACTT 115449 29 96.6 32 ............................T ACGGTCAACGGCAAGGCCAATGCCTCCGACGT 115510 29 100.0 32 ............................. GGCATGCGCGTCTGCGGCAGTTCGGACACGTC 115571 29 100.0 32 ............................. GTGGATGTGTTCCGTTTGAGTTTCCTTAAGGC 115632 29 100.0 32 ............................. ATCACAACGTCCTCGTTCGTCGTTGCCGTCCG 115693 29 100.0 32 ............................. ACGAGCGGAACGTTGAATGGAACCGCAACGTT 115754 29 100.0 32 ............................. GTGGTGTCGGTGATTTGGGTTTCGTCGCCGAG 115815 29 100.0 32 ............................. GCACGGTCACCGGCGGCACCCCCGTCACGCCG 115876 29 100.0 32 ............................. AACAGGAAAAACGTCGTCCACCGGTCCAAGAA 115937 29 100.0 32 ............................. ACCCATGACCTCGACCAATTGGATTGGGCGCT 115998 29 100.0 32 ............................. GGCGACGTCATAACGGTGTCCGGCACCGCGAC 116059 29 100.0 32 ............................. GACAGCCTATGAATCCGCCAGCCGGTACCCCG 116120 29 100.0 32 ............................. TGCTGCACTACTGAACTACTGAGAACCCGAAC 116181 29 100.0 32 ............................. TGTTCGATGATGGTGCTCCGGTATTCGTGGGC 116242 29 96.6 32 .........................A... GCCAATCAGCTGCGTCAACGGTTGAAGGACGA 116303 29 100.0 32 ............................. GGTGTCCCGTTACGCCGAAGCACATTATGGAA 116364 29 96.6 30 ............................A AAGCCCCCCTTCTTGATTGGGGGAGGGGCT 116423 29 100.0 32 ............................. ACTCATGCGCGTGTGTCGTGCGAACGCGGACC 116484 29 100.0 32 ............................. CCGACCCTGTCGCTACAAGCCATGATATGATC 116545 29 100.0 32 ............................. AGGCGATCGACGGAGCGCAAGGAGCCGAACAA 116606 29 100.0 32 ............................. TAACGTTCATCGATATAGGGAGGCAGATTCAA 116667 29 100.0 32 ............................. GGTTTTGGCCGTGTACTGGCCGTCTTGGGTTG 116728 29 100.0 32 ............................. GCCGCCGCCGCAAAAACCAAATGGGATGACGC 116789 29 100.0 32 ............................. CCGACGCGCGTGCGCCGATAATAATCCATGGT 116850 29 100.0 32 ............................. GATGTGACCGTCAGCGCGAAACTCAATTTGAA 116911 29 100.0 32 ............................. CTCGGACGACAATACCGGCTTGGACGGTACGG 116972 29 100.0 32 ............................. GTCAACGTACGCCAGAACGGGTTCACGCGCGA 117033 29 100.0 32 ............................. GAAACAATCAAAACTGCCTTCAACGCCAACAG 117094 29 100.0 32 ............................. GCGGACGGCAACGCGAACAGCATTCAGACGCT 117155 29 100.0 32 ............................. TCCACAGCAGTCAATGCTTCGAGTGTTGCGAC 117216 29 100.0 32 ............................. ATAGTTTTGTTGCCGATGACCGCGAATTCGAG 117277 29 100.0 32 ............................. GCCGTGACTCGTATCGACACGATGACCGCCGC 117338 29 100.0 32 ............................. GCCGACGAAACCGCCTTTGCTGAAAATATCGT 117399 29 100.0 32 ............................. TTTGGTGGCGTGCTGTCCGGTCTTGGCGGTCC 117460 29 100.0 32 ............................. AACAGTTGCGCGAAACCGTCCTGTGAGCCTTT 117521 29 100.0 32 ............................. AAGGCGCAGACCACGGCGGACGGGAAGAACCT 117582 29 100.0 32 ............................. GCGTTTCTGGCTTTTCGCGGTCTCGTAGAGCT 117643 29 100.0 32 ............................. GATGTGCTCGACAGTCTCGACAAGGAGGACTC 117704 29 100.0 32 ............................. CGTCACCGGTGTTTTTGCCGGAGGTCTCCTGA 117765 29 96.6 32 ............................A CGAACATCTACAGTGACGTGTTGACCGTGACC 117826 29 96.6 32 ............................C TGGCAGTGCGGCATCGACACCGCGACCGTGCC 117887 29 100.0 32 ............................. CATTCGCGTCACGACTCGGATAGCCGGACACC 117948 29 100.0 32 ............................. GAGAGTCCGTCATGGTGCCCTGTTGGTCTTGC 118009 29 100.0 32 ............................. AACTGGCGAAGGCAGGGGCGAATGCCGTCGAC 118070 29 100.0 32 ............................. TCGTCGGTCCACGCGATCTCGGGCACGCGGCC 118131 29 100.0 32 ............................. GCCGACGAATTCGAGTTCGAACTCGTGGACAG 118192 29 100.0 32 ............................. GCCTGGACGCCACGGTCAGCGTGCACCGGCTC 118253 29 100.0 32 ............................. GCCAGGGAAGTCCCCGTCAACGAGGAAACCAA 118314 29 100.0 32 ............................. GCCCTTCGCCAGCCTCTCCCGGCGGAGGGCCT 118375 29 100.0 32 ............................. CAGGTACGCCTTGCGTTTCCTGCCCCAGCCAG 118436 29 100.0 32 ............................. GCGGTGTTGTCGGCGATGTCGGCGAGGAGGTG 118497 29 100.0 32 ............................. GCGCTCGCATGGCTGGAACGGCATGCCCCCGT 118558 29 100.0 32 ............................. CTTAACGCCAGCGACAAAATATCGCTGAGATA 118619 29 100.0 32 ............................. TGCCAGAAGATAGCAGATGGTATGAGAACGGT 118680 29 100.0 32 ............................. GCCACCGCCGACAGCGCGGCCCAGTCCGCCAC 118741 29 100.0 32 ............................. CATCGGAATTCAACTCGGCGGCACCGCTGCTG 118802 29 100.0 32 ............................. GACGCGCCGTTCCTGACGCCCAGATTCAGTCC 118863 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 71 29 99.8 32 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : ATAGGGCAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTAACGCGTTGGCTGTTTGAGATATCCCCTGGTGTCTATGTAGGCAAAGCTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATCAGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGATTTCAGAACACATGGGCAAGAATGGGAGCCAGTGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAAGCAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : GTCGGTTATCTTCGTGGCCGACCTGTCCGCGTCGTTTGCCCCTGTATTTAGTCAAGTCGGTGTTTTGGGTTTGGTCATGTAGTTTTTTCGGGTTTGGTCATGGGGCGTGCCGGCCGGGTTGGTTGGTTATTGGGGTTGGTTTTTGCCGAACATGAGCGCCTCGCCGATGCGGTGGCTGGGGCCGGTGAATTCGATGAGCCGTCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGACCGTGCCCCATTTGCTGAACTCGATGTTCGTGGTGAAGATGATGCTGCGTCTCTCGTACGAGCTGGCGATGACTTGGTAGAGCAGGCGGGCGCCGTCGATGTCGAAGGGCACGTAGCCGAATTCGTCGAGGATGAGCAGGTCGGCTTTGGAGATGTCCTTGAGCAGGTTGTCGAGGTTGCCGTCGCGTTTGGCCTTGCCCAGTTGGAGCACGAGGCCGGCGGTGGGGAGAAACCTGACGTCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //