Array 1 1065364-1063170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075968.1 Clostridium perfringens strain 310/85 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1065363 30 100.0 35 .............................. AAGGGAACTATAGCGAATATAGCAAAGATAAAAGA 1065298 30 100.0 36 .............................. CTTTCTTCAGTAGTTATAACTTTAATTCCTACATCT 1065232 30 100.0 35 .............................. TGGCTGGTGCATTTCCAACATGGTCAGAGTGATCA 1065167 30 100.0 36 .............................. AAAACGTGTAAAATCAAACATTTTAAGAATTTTAGA 1065101 30 100.0 34 .............................. TAATGTCTTTAATAGGATTGGCTACAGGAGATTT 1065037 30 100.0 36 .............................. AAGTTTGAAGTAAATTGTTGTATTTTGGAGGTTTTC 1064971 30 100.0 35 .............................. ATCAAGCAGCTTTAAAATTGAAGGGAGTAAGATAA 1064906 30 100.0 36 .............................. GTTCCCTTGTTCTATTCCCTTGCGAATTTCATCTGT 1064840 30 100.0 36 .............................. CCTATATATTTAAAATCTCTTTTAAATATTTCTGAC 1064774 30 100.0 36 .............................. ATCTTTTATAAACCCAATTTGCTTTACTTACTGGGT 1064708 30 100.0 35 .............................. GCATTAAAAAATCCACCAAGAAATTTTAATAGAAT 1064643 30 100.0 36 .............................. TTTAGAAGATTCAGGTGGAAAGCCAGTAAGAATATA 1064577 30 100.0 34 .............................. ATTTTATTTTACCTGCTAGCATATTCATTTTAGA 1064513 30 100.0 35 .............................. AGAGAATAAAATATATAAAACTAGTGAATTGGTGT 1064448 30 100.0 38 .............................. ATGGAAGCTAAAACTAATAAATTAATAGCTAATAAGGC 1064380 30 100.0 35 .............................. GAAGAGCAACCAACCACAGGGAATATTTTTATATA 1064315 30 100.0 36 .............................. TATTTTTTATTGTCATAAATGCGCGTCAGATGTATT 1064249 30 100.0 35 .............................. TTACCTACATTTTGGCCACCTACAAAATATTCTGA 1064184 30 100.0 35 .............................. ACATCTGCTATTAAAGGATTAGGTATCTTACCCTT 1064119 30 100.0 36 .............................. AGAAACCCCTGCTTTAGTCATTTCTACATAAGCAGC 1064053 30 100.0 37 .............................. TTACTTACTTTAACAAGATTTCATTGACTTACGTTTC 1063986 30 100.0 36 .............................. TGTAGATTATTCTCTAAATATTTCAAACTATTATTA 1063920 30 100.0 37 .............................. TTTTCTATTGTTTCTTATTCTTTTATTCCTAGAAAAG 1063853 30 100.0 36 .............................. TAGTAGTGGTGGTGGAATAGATTTTAAGGCAATGGG 1063787 30 100.0 36 .............................. ATAAAAAATAATGAATATATTAATAGATTTAGTTCC 1063721 30 100.0 36 .............................. TTATACCTTCTAATGCTTATTTTGTAAGATTTACAT 1063655 30 100.0 36 .............................. CGAAAAACCGACCGAGGAAAAACCGCTTGAAACTAC 1063589 30 100.0 34 .............................. AGAAAGTAGGTGATTAAGTTTTGGAAGAATATTT 1063525 30 100.0 37 .............................. TTACAATTTTTAGATTACTATAGTGGGAAATATAAAA 1063458 30 100.0 35 .............................. AGCCGTAAACTCTCCTAGACTTAAAGCATTCCCTT 1063393 30 100.0 36 .............................. TTTTTAATGTAGCTGCAATTAAATTTATGTTTCACG 1063327 30 100.0 34 .............................. TAATAACCAAATCATGTTCTTTCGCTGTTCCTAT 1063263 30 100.0 34 .............................. AAATGGCAAGAAGAGCGAAGAAAAAAATATGGTC 1063199 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 34 30 100.0 36 ATTTAAATACATACCATGTTAAAGTTCAAT # Left flank : AAAATTGATTTTAAATAATTAATTGAAAACTCAAATAATTTAATTTATCTTTTGTTTAGTACATCTAATGTTATGGTTAAAAGATTATATGCATTAAATACATTTTTTAAATACTCCACGAGTTATTACAAAATTTATTATATAAATTAAATACATTTGATATTTTAATTATACCAATAAAAACTATTTCTACAAAATTTATCTTTTATTAATTTTATTTTCTTAGGCTATTTTTTCTTTTTATTTCATAAAAATATTACTTATTATAGATATAATTCTAATTTTTATCTGTAAATTTTATAAATTAAGTAATTATTTTATAAATTTATATATTATGGTAATATTAATTATTTAATAAAATATTAGTTAATAATATAAATATTTTAATCAACTTAGAAACATAGCAATATACCTATTCCAATAATTTAATATTTAAAGTCCTTATATAAAAATATATATATCAATTTTATTCATAAAATATATATTTTGCGAAGTTATTT # Right flank : GCTTGTAAAATAGCCATTTCTTTTTCTTGATATTTATCTTTAAGTTAGTTATTTCAACACTTCTCTTATTATTTTACCAGTGTTTCATTTTAATTTAAAGCACCAATATAAAATCAACTTGTAATCTAGTTATTTCAAGGTCTGAAAGGTGATTTTATATGATTTTAGGCTGGTAAAATTTTATTTGTGTATTTATAGATGTTTCTAAGAATGCATTAATTAAACACTAAAATTTACATATTCAGTAAACTTCAAATTTTTATCAGTGAATTGATTTAGCCCTTATACTATGCTAAAATTAACTTATAATTTTGAATTTGTTAATTAAAACTTAATAATATAAAGTTTTCTAGGGTTCCGTAGCTTTTTAGTTAGTCTGGTCCAAGAGAAAACGCACAGATAAACTGTGAACACGGAAGGATAAAAGCCTGGGAGATATTTTTATAATATTTCTCTCGCTTTTTTATTTTAAAGGAGGTATATTGTTATGAAAAAGTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATACCATGTTAAAGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1075513-1076330 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075968.1 Clostridium perfringens strain 310/85 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1075513 30 100.0 35 .............................. TTTAAAGAAGATTTACATTCTAATAAAGAAAGCTC 1075578 30 100.0 35 .............................. ACCATTTCTTTAGATTGACACCTAACTACTTTAAC 1075643 30 100.0 37 .............................. ATTTATTTGTACTTTTGAAAGACAGAAAAGAGGTGCA 1075710 30 100.0 36 .............................. ATCCTTTCTTTTATATAATTAAAGGCAATAAAAAAG 1075776 30 100.0 36 .............................. TTTTTTGAATATCAAAAATCTTATTCTCTTCACCAA 1075842 30 100.0 36 .............................. TACAAGGCACTTTTAACGAAAAGCCATGCTACTATT 1075908 30 100.0 35 .............................. GAAGGATTTAGAAACTTTTGGATTGGAATGTGGGA 1075973 30 100.0 37 .............................. TTATCTAAATTACAATCTAAATACTTCTTAGCAAGTA 1076040 30 100.0 35 .............................. AAAGGTAAGATACCTAATCCTTTAATAGGGCCTGT 1076105 30 100.0 36 .............................. AAGCAAACCAAGTCCATATACTTTAGTTCACATATC 1076171 30 100.0 35 .............................. GACTATTACAAGGTTGAAGTTAATTCTAATGACAA 1076236 30 100.0 35 .............................. TACTCGATTTGATTTAGAATTGCAAATTGTTCATC 1076301 30 93.3 0 ......TT...................... | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.5 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : TGTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAGTTTGTGAAATCCTTGAAATAACTAAGTTTTAGGTTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATCATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTAAAAGT # Right flank : TCATATGTAATTTCTTTAGGGAGTGAAGAGACCAGTGTTCGTCGTTTAAATTTAGCACAAGCTTTTAATCCTATTGGTTCATTAGCTGGTATTATAATGGCTAAATATATAATACTAGGGAATTTACATCCAGCAACTTATGAAGAGAGAGTTGCTATGGGATCAGAGGCCTTAAGTAAAATACAAAACAATGAATTAATATGGGTATGTGTACCATATGTTAGTTTAGTAGTTATAGCTATAATAATTTGGTGCTTCTTTAAGAAAAGTAAAGGTTCAGAAAAAGATGATTCAGGAGAACTTAATATAATTGAATCAATAAAGAAATTAGTAAAAATTCCACGTTATGCTTTTGGAGTAATCACACAATTTTTCTATGTTGGAGTTCAAATAGCTGTTTGGACTTGGACTATAAAATATGTAATGGTTACTGTGGGTATAGATGAAGCATCTGCTGCTAAATATTATCTTATAGCTATGTTTGGATTTATTGCATGTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //