Array 1 334764-334616 **** Predicted by CRISPRDetect 2.4 *** >NC_013722.1 Xanthomonas albilineans GPE PC73, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 334763 28 82.1 32 CC.AG.G..................... TTTGACCGCGAACTCATGCCCGTCTTCCCGCT 334703 28 100.0 32 ............................ AATGCGCTGGAGCAGCGGCTGAGAGCAATCGA 334643 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.8 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGCGTGCCATTCACCGGCTTCCTCTACGCAGGGCTGATGATCGACACCAGTGGCGCGCCGAAGGTGATCGAATTCAACGTGCGCTTCGGCGACCCGGAAACGCAACCGGTGATGCTGCGCCTGCAATCGGACCTGGTCGATCTGGTCGAGGCAGCGCTGGATGGGCGTCTGCATGCGACCCAAGCGCAGTGGGACCCGCGCCCATCGCTGGGGGTGGTGCTGGCCGCGGCACCGTATCCGGACACGCCCGTCACCGGCGAGCCGATCACCGGCCTGGAGGCGGTGCCCGCCGATGCCAAAGTGTTCCATGCTGGCACCGCGCTGGATGCGCAGGGGCGCGTGGTCAGCGCCGGCGGCCGCGTGCTGTGCGTCGCCGCGCTGGGCGATAGCGTGGCCGATGCGCAGCGCCGCGCCTATGCCGGCGTGGCCCGGATCCACTGGGCCAGCGCTTTCCACCGCCACGACATCGGCTGGCGCGCCATCGCGCGCGAACGCGGCG # Right flank : ATCAGGCGCTGGATCGCCACGCCAATGCCTCCCATTCACTGCCGCACCCGGTGACGGTGATCGCGTCGCGCCAACCACGGGTGCGCTATCTTGTTGCGGTGCACACAGCCTCGCTCGAATCCCACCTCAGCCGCCTCTGGGCACATGAAAAGGCCAGCTACGGCCTGCGCGTGTTCATCGCGCTGGCCGCGGCGATGGGTCTGTGCTGGCATCGCCAGCAGTTGGATGCGCTGCCGGCGATTTTCCTCGGCACCATCGCCAGCGCCATCGCCGAAACCGACGACAACTGGCTGGGGCGGATCAAGTCGGTGCTGCTGTCGCTACTGTGCTTCGCCGCGGCCGCCGCCGGCGTGGTGGTGCTATTCCCGTATCCGCTGGCGTTCGCTGCCGGTCTGGCGCTGTCCACCTTCGCCCTGACCCTACTCGGCGCGCTCGGCGAGCGCTATGCGTCCATCGCCCAGGGCACGGTGGCGCTGGCGATTTACGCGATGATCGGCATC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2852457-2852604 **** Predicted by CRISPRDetect 2.4 *** >NC_013722.1 Xanthomonas albilineans GPE PC73, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2852457 28 96.4 32 A........................... AATCGCCGCAGCGCCCGCACTGACCGATGTAC 2852517 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 2852577 28 89.3 0 ........................TGC. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGGTGATCGCATGAACGCTCCAATCACCTAAAAAGCCAAGTGGTTTTTGCACATTTTTTGCTTCTTTTTAGAACAGGCCATCAATGCCCCGCAAAGCCCCCACACCCTGCCGCCATCCTGGTTGCGGGAAGCTAGTTTCAGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGACGTGGCAGAAACTGCGCGCCTTCGTCATGCAACGCGATCAAGGACTATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAGACGGCCCAGGAATCGCATCAGGGACGCGAAGGTGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : AATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTGGACAGAACCGTGTCAGAGCTAAGCGTTGCAAGGGACTACAAGGCTGACTTGGCGCAGATCGAACAGATCGATGCGACGCCATGGACTGCGGCAAGTCACGCGGACATGACCTCAGAACTGAAAACCTATGCGCGGTCGTAAACCTCTGCCTGTAGCAATCAAGAAGATCAAAGGCACGCTGCAAAAATGCCGGACCAACCCGCATGAGCCCCGTCCCGACGGGCAATTGGGTGAGCCACCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACGTATGCGGTAGAGAACGCACCACTCGGTTTATTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGCGAGGCGCTGGCA # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3116521-3116668 **** Predicted by CRISPRDetect 2.4 *** >NC_013722.1 Xanthomonas albilineans GPE PC73, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3116521 28 96.4 32 A........................... AAAGGCTGACTGGATGACCTGCCAAATAAGGC 3116581 28 100.0 32 ............................ TGGTTAGGGTGGGGCAGGCGCACTTCGCGAGC 3116641 28 89.3 0 ........................AGT. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGGTGATCGCATGAACGCTCCAATCACCTAAAAAGCCAAGTGGTTTTTGCACATTTTTTGCTTCTTTTTAGAACAGGCCATCAATGCCCCGCAAAGCCCCCACACCCTGCCGCCATCCTGGTTGCGGGAAGCTAGTTTCAGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGACGTGGCAGAAACTGCGCGCCTTCGTCATGCAACGCGATCAAGGACTATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAGACGGCCCAGGAATCGCATCAGGGACGCGAAGGTGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : AATGCTCGGGGCATCAACCGGCCCCGATCCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCTCGCGTGCAAAATGGAAAACTTTTTTTGGAAAAATCCGTGTCAGAGCTAAGCGCTGCAAGGGATTACAAGGCTGACTTGGCGCAGATCGGACAGATCGATGTGACGCCATGGACTGCGGCAGCGCACGCGGACATGACCCCAGCCGAACCCGTAGAACTGGAGCCCTATGCGCGGTCGTAAACCTCTGCCTGTGGCCATCAAGAAGATCAAAGGCACGCTACAAAAATGCCGAACCAACGCGCATGCGCCCCGCCCCGACGGGCAGTTGGGCCAGCCGCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACCTATGCGGTAGAGAACGCACCGCTGGGTTTGTTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGT # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3423446-3425663 **** Predicted by CRISPRDetect 2.4 *** >NC_013722.1 Xanthomonas albilineans GPE PC73, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 3423446 31 100.0 33 ............................... CGCATTGACTCCCAGCGCGCATACGGCACTGCA 3423510 31 100.0 34 ............................... CTCGCGGGATACGCCGGAATAGCCAAACCCCTTG 3423575 31 100.0 33 ............................... TGGATCCGCCGCATGTCCGAACAGCACGGCATG 3423639 31 100.0 35 ............................... TTGGTAGCTGCGCGAGACCTGTTCGAGCACCATGC 3423705 31 100.0 35 ............................... TTCATAACGGGGATGCTCCTTTCAGTGTCAGATGG 3423771 31 100.0 35 ............................... CGCAATGATCGTGCGGACGCTGAGGCGATGCAGAG 3423837 31 100.0 36 ............................... TTGCGCGAGCTAGCCTTCTTGGCGCTCGCGCTTGGG 3423904 31 100.0 37 ............................... GTTTGTCGTGCCAGCAACGCTTGGCACTCGGTACGGG 3423972 31 100.0 36 ............................... TTGCACAGGGGCATTCGCCCCGACAATTTCATCGAG 3424039 31 100.0 35 ............................... AGCCGTAAGCTGCGCGCCGTCGTAGTAGTCGCGAG 3424105 31 100.0 34 ............................... TACGACGTATTGCCTTCCCGACTCAATCTGTACG 3424170 31 100.0 35 ............................... GACCTTGCTGGCGTACTCATAGAGATTGATGGTCG 3424236 31 100.0 35 ............................... GACTTCATCCTGATTGCCCAGCAGGGTCTGCAACT 3424302 31 100.0 35 ............................... GGTATACAGCTGCGCCGTTGGCATCTTGGGAGTGG 3424368 31 100.0 35 ............................... TTGGAAGTGCTCGGTATCGCCAGCGGCGAGGGCCT 3424434 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3424499 31 100.0 37 ............................... AAGCGATCCGATGCGGTCGGCCATGCCGGCCTTGACG 3424567 31 100.0 35 ............................... CGACCGAGACCGACTCGCCTTCCAGCCCGCGCAGG 3424633 31 100.0 34 ............................... GTGCTCCTCGATGACGGATCCGCAGTCGCTGCAG 3424698 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3424763 31 100.0 38 ............................... GCATGTGCGAATGCACGACGGTCGGGGCCGAATGATGG 3424832 31 100.0 36 ............................... GCCTAGACCTCGGCAAAGAACCCGCCTATGAGCCGG 3424899 31 100.0 36 ............................... CTTTGGAAATGCTCACCCACCCCATGCGCTATCTGG 3424966 31 100.0 35 ............................... ATCCTGGCTATTGTCGCAATTGTCAAGGGCGGCGC 3425032 31 100.0 35 ............................... GAGTTCAGCCGCGGCCCGCTGGTCTGGCGTTACAG 3425098 31 100.0 34 ............................... TCATCTGACTCTCCCTCACTGTTCAAATGGGCAA 3425163 31 100.0 34 ............................... GTACTGATTCCATCCGGGCTTGCTCCTCGTGGGC 3425228 31 100.0 36 ............................... AACGGTAGGAAGGCCGCTGAGGACTGGGCGCGCGCG 3425295 31 96.8 38 ........T...................... GATTTCGTCCTCTCCGTAGCTGTATGGGCTGATGCCAG 3425364 31 100.0 37 ............................... ATGTACTACGTACACGGGAGGGCCATCGCATGAGCCG 3425432 31 100.0 37 ............................... GCCAGTCAACGTGGAGAGATTCACGGCAGCGCGGCTT 3425500 31 100.0 37 ............................... GGCACAAGCGTCCAGCCATCCGGCACACCCTGCAGGC 3425568 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3425633 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ====================================== ================== 34 31 99.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3612886-3614293 **** Predicted by CRISPRDetect 2.4 *** >NC_013722.1 Xanthomonas albilineans GPE PC73, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3612886 28 100.0 32 ............................ AACGCCAGCGGCCAGATATACAACTTCTTGCA 3612946 28 100.0 32 ............................ ACATGGCCCGGCTGCGGGACGCCGGCAACGGT 3613006 28 100.0 32 ............................ ATCTTGCTCTTGGGTGGGCGGCGCTTCTGGCT 3613066 28 100.0 32 ............................ TGACACTTAGTTAAGCTTTTCATGGATCACTC 3613126 28 100.0 32 ............................ CTACGGCGACGATCAGCGTCGTGGCTTGTGGC 3613186 28 100.0 32 ............................ ATTGCAAACTATCAAAGCGAGTTTTCTTCTTA 3613246 28 100.0 32 ............................ ATCGTACCTCGCTCAGGAGGTCGGCGATGCGA 3613306 28 100.0 32 ............................ TACGCAGACTGGGACGCGGCGTTCATGGAGGC 3613366 28 100.0 32 ............................ TCGATAAGCGCACGGCCAATGCCGGTGCTCTG 3613426 28 100.0 32 ............................ CAGCCCGCAACAGATCGAGGCCAACACGAAGG 3613486 28 100.0 32 ............................ TCGCTGCGCCATAGATTCCGGCCGTCCACGTC 3613546 28 100.0 32 ............................ TCCCATGCTAATCAGTCCCGTCTATTACCCAC 3613606 28 100.0 32 ............................ AAAGAGGATTACCGATGGCTCACGCACCGGGA 3613666 28 100.0 32 ............................ ATGCACCCTGCTTGTCATCAAGTCGCGGCAAG 3613726 28 100.0 32 ............................ GATGCGCCAGGCCATCGAGGAAGGCGGGTTAA 3613786 28 100.0 32 ............................ TTCTGCGCCGCAATCACAATAGTCTGCATGAT 3613846 28 100.0 32 ............................ ACAGCAGCAGTCGCGCAAAGCAAGCCGCAAGC 3613906 28 100.0 32 ............................ CATCGAAGCCGCACTTGCTCCTGATGCAGCGG 3613966 28 100.0 32 ............................ ATGTCCTGCGGCAGCAACGCGCCGATGGGGGC 3614026 28 100.0 32 ............................ CGGTGCTGCGCAAGTGATATCCCGGATCGTGA 3614086 28 100.0 32 ............................ TGGTGGCCGCATCCGCGCAGCACTTGCGCAGG 3614146 28 100.0 32 ............................ ATTAGAGCAATATATGTGCTTGCCATCTATGT 3614206 28 100.0 32 ............................ CGGCTGAGACAAGGCACAAGGAGCCGGTCATG 3614266 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGTGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTAAGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATTTGCTGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAGCGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAATAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //