Array 1 424145-425561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031835.1 Lactobacillus amylolyticus strain L5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 424145 30 100.0 37 .............................. TGAACAGATCGAACTCAACAATGCGCTGAGAGATGCA 424212 30 100.0 36 .............................. GTCGTTGTGATTTCAGCAGAGCGTACGAAAGCAAAA 424278 30 100.0 35 .............................. AGCGACGTAACTGTTGTAATGGACGTTGCACATCC 424343 30 100.0 35 .............................. GAATTGATAGAACTCCACATGCTATTCCAATTCTT 424408 30 100.0 36 .............................. GTTGCCAATGCGACTACGATCATGCTAATAATAATG 424474 30 100.0 38 .............................. AAAAGCTTTTGATGTTGTTCATAACAAAAATGGCTTAG 424542 30 100.0 36 .............................. TGAATAAACTAGCTTAACAATGCGCTTGCGATACGC 424608 30 100.0 37 .............................. TTCATTGTGACCAACAAGACTGATGGTGAAATGATTT 424675 30 100.0 35 .............................. CATAAGTAATGATGTTCACGTAGCCATTTGAATAA 424740 30 100.0 36 .............................. CAGGATCTAATGAACCAAGTGTTTAACACCATGCAG 424806 30 100.0 35 .............................. ACGCAAAACACTACACCAGCTGAGGGAGGCAACAA 424871 30 100.0 35 .............................. ACAAATGCCGAGTGGCTTGATGATGTAGAGGATGA 424936 30 100.0 36 .............................. ACTATCAGTCTGTGGTCAATGAAAATAAAGAATTGC 425002 30 100.0 36 .............................. ACAGGAATGCCTAGCGCTTTAGCCTTGGCGACTGCG 425068 30 100.0 36 .............................. TGGGATTGGAACGTTGTTCAAGACAACAACGATCCG 425134 30 96.7 36 .............C................ AAACTTCGTCCCCTGCCACTCAAAAGCCTTATTGTC 425200 30 100.0 35 .............................. ACAAACTGGAATACATAGTTGCTCCCAGCCAAGCG 425265 30 100.0 37 .............................. AAGTAAATAGCTTATTTGAAGTTACCAACTTGTTAGC 425332 30 100.0 36 .............................. GAAACTACTGAGTTGCCATCGCCAGGCCCCCAATCA 425398 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAATAGTTGGTAG 425466 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 425532 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 97.6 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : ACCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATTCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGGGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCAGACGGCCTGCACACTAATGCCATTTATGCTTTTAAGAATATGCTTGATGTCCTTTTGAAGGACGTTGAGCCAACTCATATTTTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGGATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1200598-1197393 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031835.1 Lactobacillus amylolyticus strain L5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1200597 36 100.0 30 .................................... ATCTTCGTAGCCGTCCCCAACGTTTTGAGC 1200531 36 100.0 30 .................................... CAGATAGATTGTATTTATCATACTTAACAT 1200465 36 100.0 30 .................................... CCGTTGGCTTATAAGTCACATAAAAATTTC 1200399 36 100.0 30 .................................... AAAGACTTCCAATCAATGCATTGTTCCTTT 1200333 36 100.0 30 .................................... TGCTCATAGCATGGCTGACCGTGCACCTCT 1200267 36 100.0 30 .................................... ACTAGTATCAACAGTACCATTAACAGTATC 1200201 36 100.0 30 .................................... CAATTGGCTACCATGGTATCAGTTAAGCAC 1200135 36 100.0 30 .................................... CAGCAGGATATTTATTCCCACCTTCATTGC 1200069 36 100.0 30 .................................... ATGAAAAGGTCGGTAACTACATGATTGCTT 1200003 36 100.0 31 .................................... CCTGAAACCGATTATGGAGAGTATGAGGGAT 1199936 36 100.0 30 .................................... CATTCTGAGAGAGCTCCCATACATAGACCC 1199870 36 100.0 30 .................................... AGAGATAAGAAGTATTAAACAAGAGAGGTT 1199804 36 100.0 30 .................................... TACTACAGAAGAAAATTGATCAAAGAACTA 1199738 36 100.0 30 .................................... TTAGAAAGAAAAATAATATGACAGAATTAA 1199672 36 100.0 30 .................................... AAATATTTGCTACCGATAAGCGTGAACCAA 1199606 36 100.0 30 .................................... TGCACTTCATTGAAAAAGCTCAAAATGAAG 1199540 36 100.0 30 .................................... TCAAAGATGCACGGACGAACAAACACTACA 1199474 36 100.0 30 .................................... GACTGACGAAAAGTTCATTAAACAAGCAAA 1199408 36 100.0 30 .................................... AATGGGAAGCTGAACAATTAGTGGCCAAAT 1199342 36 100.0 30 .................................... TCACTATTAAACATGCTATTAAATAGTTCA 1199276 36 100.0 30 .................................... TTAGCAAGAACAGAATTATTAGAACGCTTG 1199210 36 100.0 30 .................................... ACTGTTCCTCCTCAAATTGATGTAGGCAAT 1199144 36 100.0 30 .................................... AAAGACATGAAATACCAAACGTATTTGCTT 1199078 36 100.0 30 .................................... CAATTCACACCGTTACTGTTCACGGAACTG 1199012 36 100.0 30 .................................... GACAGAGAACGCGGTGCTGGCTCGTATGAG 1198946 36 100.0 30 .................................... GAAGGATGATTACCGCTTATTGATTGCACA 1198880 36 100.0 30 .................................... ATCCAATTCATAATAAATACCTCCACTTAG 1198814 36 100.0 30 .................................... TCTATCAAAGAAGCTGAAACCTGCCAGAAC 1198748 36 100.0 30 .................................... CCTTTGCCATATTTGCCACTCTGATTCCAG 1198682 36 100.0 30 .................................... GGCGACTCATAAAGAAGTTAAGCCTGAATC 1198616 36 100.0 30 .................................... TAACCGTAGCTGGTTTATGGCAACATGCTC 1198550 36 100.0 30 .................................... AGATCAAAAATCCAAACCTAATATACGCGG 1198484 36 100.0 30 .................................... GAAAAAGCGGCTTAACCAATAATTTCTTTT 1198418 36 100.0 30 .................................... TTGCAGCCAAGCCGCCAACTTGCTTTAATC 1198352 36 100.0 30 .................................... TGCGGAGTTGGATACATGGTCTTAAGCAAG 1198286 36 100.0 30 .................................... GAAGAGCTTGAATTACTTCAAGAGTTAAAA 1198220 36 100.0 30 .................................... GAGCTAGGTGGAAAATTGGTTCTTGGAGTA 1198154 36 100.0 30 .................................... AGAATGCAGAAGAAGCTAACTCAATGACTG 1198088 36 100.0 30 .................................... ACAGATGAAGTTAAGAATGCTATCGAGGTA 1198022 36 100.0 30 .................................... ACACTAATATAGCAATTTACGCAAAATAGA 1197956 36 100.0 30 .................................... CGGATTTGTTCCCAACCAGCGTCCCAAGAC 1197890 36 100.0 30 .................................... ATCATCAACCTTCCAAACTTCTCTAAATAG 1197824 36 100.0 30 .................................... ATCATCAACCTTCCAAACTTCTCTAAATAG 1197758 36 100.0 30 .................................... TGATTGTCTTGCCAGCGAAACCCGAAGAGG 1197692 36 100.0 30 .................................... AAATAGGCAAAGAGCAAGCCAATTTTGCCG 1197626 36 100.0 30 .................................... GGCGACTCATAAAGAAGTTAAGCCTGAATC 1197560 36 100.0 30 .................................... GATAAATTATTGTATTTAGTAGAGTAATCA 1197494 36 100.0 30 .................................... CCCATCAATACGATATTGAAAAGGCTCACA 1197428 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 49 36 100.0 30 GTTTTAGATGATTGTTAGATCAATAAGGTTTAGATC # Left flank : ACAAAAGATGTTATTAATAAATATTCATCTCATATTTTTAAGAGTTTTATTGAAAATTTAGATGAAGAGAATCGTAACAAAATTATGGTAGCTTATCATAAATTAGAAGCACTATTACAGGATTCATTGTTATTAGAGGATCTTCCGTTAGAAATCGATTTTAATGAAGATTTGGAAAAGTTGCTGAAATTAGAGAATCTACACTTAGATTCAAAACTGATGGAGGAACCATATGCTATAATTGAATCGATCTTAAAGATTCATCAGTTATGTAAGCTGGGTTCGATTCCTGTGATCTGTAACGTCGCTAATTACTTAAATTCACAGCAACTTGATGAGTTATCTGAATTGGTGAATCAGCTTAATATGAAATTGCTTTTAATAGAATTCACAGATAAGGATTTTCTGATTGTTCCTAAGAATGCTGAATTCTACTATATTGATGAGGACCTTGTTGATTGGTATTAATCTTTGAATGAAAACTAGATTATAAAAAATCG # Right flank : AATCTACGATAGCAAGAATCGAATCAGGATCGATGAATGTATCTGTTGGCTTATTATCAGATATTGCTGAAGCCGCTCATCGGCAAATCAAGCTTGTTTTGGTGTAATTAAAATCTGAAAAATAGGCTTACTACGAACGATCACATCATAAATTTGATGTGGTCTTTTTCTTTTATTGCAAATTTGCACGAATTCAGCTAAGATCTAATCGACCTTTAAACAAAAACGTGCGAATTTTTGCTACAATTAAAAGTGTATTTACTTTTTCGAAGGAGTAAATTATGAAAGTAAGAAAAGCTGTTATTCCCGCTGCGGGACTGGGGACCCGCTTTTTACCAGCTACCAAGGCCATGCCTAAGGAAATGCTGCCGATTGTTGATAAGCCAACCATTCAATTCATCGTTGAAGAAGCAAAGAAGGCCGGCATCGAAGATATTTTAATCGTTAATGGCAAAAACAAGCGGTCAATCGAAAACCACTTCGATTCAAACCCTGAATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //