Array 1 225862-224815 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB822441.1 Schaedlerella arabinosiphila strain ASF 502 acMal-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================== ================== 225861 32 100.0 35 ................................ AACGTTGCCGACTCAACTTTGCGTTGCGCTTTTTC 225794 32 100.0 33 ................................ TTTCTCCCAAAGATGGATTTCCCCATATCCCAT 225729 31 90.6 31 .......................T...-..C. TTTTCCCCTACACACATCATATATTTTTTTA 225667 32 93.8 59 ......AA........................ TTTCTCCCAAAGATGGATTTCCCCATATCCCATGTCGCTCCCCGCGATATCTTTGTTTT 225576 32 100.0 34 ................................ AGCGTTGTAAAGCCAAAATACTGAAAATCTATAT 225510 32 100.0 35 ................................ TAACCTTATATCTGCCCCTAACAGTCCAATTTTTA 225443 32 100.0 35 ................................ GTCATTTCTTGCTGCTTTTTTAATCTTTTCCGAAT 225376 32 100.0 35 ................................ AACCTGCACAACGTTTTTATGCCCACACCAACAAT 225309 32 100.0 34 ................................ AAAGCGATAAATTGCCATCTCAACGTCAATCGTT 225243 32 100.0 34 ................................ CCGGACAGCTTGTTGTAAGCATATGTCTCATGCA 225177 32 100.0 34 ................................ CTTCTGTGAAGTACACGCCTTTTTTTGTTAAGAT 225111 32 100.0 34 ................................ AGTCCATTTATGTAACGGTTATAGACAACCACGC 225045 32 100.0 34 ................................ TTATTCCATAATGACTCGTTTAGTTTATTATCAA 224979 32 100.0 35 ................................ CCGTTACGGTCAATCAGAATTGCTAAATCCATGAA 224912 32 100.0 34 ................................ CACGTCAAAACCAGACTGTCTGGTCTGCCTTTTA 224846 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =========================================================== ================== 16 32 99.0 36 GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCGTCGCTCCCCGCGTGGGAGCGTGGATTGAAATCAGGCTCTTGTGTCAACGCTGTAGACTTTTACGC # Right flank : CATCATACTGCGCCATAAAAAAGACACCTCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGTCGCTCCCCGCGTGGGAGCGTGGATTGAAATCACAAGGTATGAGCAAATGGCGGATCATCGAAAAGTCGCTCCCCGCGTGGGAGCGTGGATTGAAATCCGGAAACAGGGATCACCGAAGCCCTGAAAGGCGAGTCGCTCCCCGCGTGGGAGCGTGGATAGAAGTTTTTATGTCCAGTGTGTCCGCTCTGGTGGCGTATCGTTCCCCACGTGGATTGAAATTAAGTTGAAAATATTGACATAAACGAATATACTATAATTGTGCTACAAAAGTATATTCGGAAAGGATGTGCAGTGATATGGGCGTTTATCTGAACAGCAGAAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 230528-229371 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB822441.1 Schaedlerella arabinosiphila strain ASF 502 acMal-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 230527 32 100.0 34 ................................ ATCCGTTCCTCGTCTGCCTTCTCACGCAGCCTTT 230461 32 100.0 34 ................................ TGTCACTTTGTGCCCTGATAGTATTTCCAGTTCA 230395 32 100.0 33 ................................ TTGTCAGATTACACCGCCCATACATTGTACAAA 230330 32 100.0 35 ................................ TTGCGGCTTTTTTGATCTTTTCAGAGTCCGCATAA 230263 32 100.0 35 ................................ TGCTTGTTTGCGCTAACAAGTCAACAAAATGTTCC 230196 32 100.0 34 ................................ CGACATATCAATTTTTTTGTTATCAACCAAACAC 230130 32 100.0 34 ................................ CGATCCCACCGCAATCTGTAAAAACGTACTACCA 230064 32 100.0 35 ................................ CATCACCAAAACCGTCATTTCGACATCCGCTGTCA 229997 32 100.0 34 ................................ CAAGACCGGAAATCTTGTGTCAAAATCAATTCTG 229931 32 100.0 34 ................................ CGATCAAATCAATAATTGTTGTGAGCCCACTCCT 229865 32 100.0 34 ................................ GGATTTCCGAATCCGTCAAAAAAGGAGCACTCAT 229799 32 100.0 32 ................................ TGCCATGATCCGCAGCTCCCGCTCGTTGACAA 229735 32 100.0 34 ................................ TCCCAGCGCCGTTAATAAAAAGATTGTTTGCCGT G [229734] 229668 32 100.0 34 ................................ ACATATACACTTTGCATTCATCTATAACCTACAA 229602 32 100.0 35 ................................ TTTTTTACATCCTACCGCAAAGTCTTTTCGCATCT 229535 32 100.0 34 ................................ GGGTGATCTAGCGGCAGTTTGTCTTTGTCAAACA 229469 32 100.0 35 ................................ AACTTGGTACAACAATCTCACCAAACTGCGGTACA 229402 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 18 32 100.0 34 GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCTTGCGTC # Right flank : TTGCGGCCTTCTTGATCTTTTCAGAATCCGCATAAGTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 231937-231775 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB822441.1 Schaedlerella arabinosiphila strain ASF 502 acMal-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 231936 32 100.0 33 ................................ ATTTTTTCTAGCGGAATACTATCTGCTGCATGG 231871 32 100.0 33 ................................ CAAGCAGCCGGCCAAGGGAAACGGGAGCTATAA 231806 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================= ================== 3 32 100.0 34 GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAT # Left flank : GGATGCATACCCACCCTTTTTATGGAAATGAGGAAATAGAGGATGCTTGTATTAATTACATACGATGTAAATACGGAAACGGCAGCAGGAAAAAAACGATTAAGAAAAGTAGCTAAGCAATGCGTAAATTACGGAAGACGAGTGCAGAATTCCGTGTTCGAATGCATTCTTGACAATGCACAGTGCGTATTACTAAAATCAATTTTGGCGGATATTATCGATAAAGAAGTAGATAGCTTGAGGTTCTACTATTTGGGAAATAAGTATCAAACGAAAGTAGAAAGCATAGGTGTCGAACGAGGACAGCCAGTAGATGGTGCACTGATTCTATAATTATTTTGTGCGAATGGTATGTGCACATGCTCCAGCAGGGGGATTCGCACCCAAAATTATGCTAATATATACGAATAAATAATATAATTTGTAGTGATTAAGAATCATACTTTGTAAATTGTACAAAATCATGCAGGATTGACATAGAAAATATGTATGATTTTGTA # Right flank : CGGCCACCAGGCAGAATACCAACGAGTATATCAGTCGCTCCCCGCGTGGGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 56305-57674 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB822452.1 Schaedlerella arabinosiphila strain ASF 502 acMal-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56305 28 100.0 33 ............................ TTTCCGAAAGTTTATTGGAAATTTGAAGAAGTC 56366 28 100.0 33 ............................ TCTGTATCAATCGAAAAAGCCTTTCCAGATTCA 56427 28 100.0 33 ............................ TTGTTCGTCATTTTTGTTTTTTCATAAAACTTT 56488 28 100.0 33 ............................ CGCAGAGTACAATGATATTGCCGGAGACATGTA 56549 28 100.0 33 ............................ TTGATTGTAAATGCAAATTGCGAAAAGATAGCC 56610 28 100.0 33 ............................ TAAAGGATGGAGATCTGTAAATCTCACCAATTT 56671 28 100.0 33 ............................ TGGCCCTCGATGATGTCAAAACCAAAAAACCCT 56732 28 100.0 33 ............................ TGTAATTACGACTCATGGGTTAAATGCGGGTTG 56793 28 100.0 33 ............................ TAAAACCTTGTTTTTACATGAATAAAATAATAA 56854 28 100.0 33 ............................ TGTGGATATTACAACTCATAGGTTGTCAGAGGA 56915 28 100.0 33 ............................ TGTATGGAGTAAGTAACGGTGCATATCCTCAAA 56976 28 100.0 33 ............................ TGCCATCCGCGATGGAGTTTGTACAGACAGAAG 57037 28 100.0 33 ............................ CGGTGTGGTGGGGCACAACCCATCAGAATCAGT 57098 28 100.0 33 ............................ TAATGTTGATTTTGCTATACGAGAGTACGAAGA 57159 28 100.0 33 ............................ TGGTCAATTGTGCGCCGAAAGGATTGTAAAAAA 57220 28 100.0 33 ............................ TATCCTTATCCTTTGTTACCTTAGATTTTGCAA 57281 28 100.0 33 ............................ TCACACCAAACAAAAACACGATCAAGTTACATC 57342 28 100.0 33 ............................ TGTATGCTTCAAAAGTGCACATCCCGTTTGGAT 57403 28 100.0 33 ............................ TTTCACTCCGACCTGTCCAAGAAGCACATACAA 57464 28 100.0 33 ............................ TGTAACGACGCAAACGTTGGCTACTCACAGGCA 57525 28 100.0 33 ............................ TAATACAACCAACTCCGGCAAAAATACATTATC 57586 28 100.0 33 ............................ TGGGTACTCTGCTCCATCTGAGGAAGAAAAACC 57647 28 89.3 0 ...............T...A.A...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 33 GTGTTCCCCGCGTGGGCGGGGGTGATCC # Left flank : AATCTTGACAGGATCGCTGAGATCGGTCTGCTGAAAATTGAGGAAAGTAAAATTGTACAAAAGTATCAGTGCCTTGTTTTATCTGGGAAAAGTATACCGGATCATATGGTAAAATTAACAGGTATTACAAATGAGATGTTAGAAAAGGAGGGAATTGGGGAAAAGGAAGCATTTGAAAAAGTGCAGGAGTTTATTGATAGCGCTCTGATTATCGGATATAATATAGAAGCTGATCTGGATTTTATTAAAAAGTCAGGAGAACGAACAGGTCAGAGAAATATAGTAAAAAAGGTTCGGGACGTGATGCAGATTGCCAGACGCAAGCTGGACGATGTGGATGATTATAGGATAGAAACAGTGGCATCTTATTTTTCTATTGATATAAGTGGTATAAACAGGGCTTTGACAAAATGCATGTTGATATATAGGATTCATTGTGAACTAAATAAATTATGACATGTTGGTTTAAGAAACTGCGATGTTTTAGGGATTTTTTTAGT # Right flank : CTATGGCGTGACGATTAAACTGATCGAAGCACAGAAATAAAGAAAGAGGGCTGCCGGAACATATGCTCTTTGCACAGCTATTTCCAGGCAGCCCCTGATTTATTGCCGGTTTACCTGCGGCCTGTTGCCGGGCCGCTATTTTAAACGCCGGTTTTTATTTCCCCATTCCTTAAACTTATCCCACGGATCTCTCATACCAATTCCAAAATACCCGTCTATTATAAGTATAAAAAGTGTATACACACTAAATACCAGTCCCCATTTTCCAATATTTTTCATAGAATGCTTCAAAATATAATCACCTCCCGCTTTTTATAATGCATCCCGCAGAACTTCCATTTTACAGGTATGCACCTTGGTCTTTTTATTATACGCGATTCCTACACCCAAAATCCGTCCGGTATACTTGGGCCTTTCTCCAAGCTTTCCTTCAAATTTTAGAGCATACTTTTTATTCTTAATCTGCTGGAGCGCTTCATCGGCCGTATGATCAACCTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //