Array 1 144574-139059 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVG01000001.1 Capnocytophaga canis strain CCUG 25240 NODE_1_length_401932_cov_5.984112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ================================ ================== 144573 47 100.0 30 ............................................... TAAGACATTACTTATCCTATAACTAAAAAA 144496 47 100.0 30 ............................................... GGCTGACATCGTAACTGTTAATCAAAACTT 144419 47 100.0 30 ............................................... CGCAAATTATTTTTCTTGCAAGGACTCAAA 144342 47 100.0 30 ............................................... GCCGATTTTATTCGGGTTTATCCTTCACTT 144265 47 100.0 30 ............................................... TGTCTTTCGTGGTCATTCTTCGGTTGTTTT 144188 47 100.0 30 ............................................... TCTGGGCGGTCGGTTGCGTAACCATTAAAA 144111 47 100.0 30 ............................................... CGGTTGCCTTAGTTCGTGGGGTTGAATCTC 144034 47 100.0 30 ............................................... TTAGCTATGAATGATAAAAAGAATAATAAA 143957 47 100.0 30 ............................................... CCAAAGTGATACTGTAGCATCTACTTTATG 143880 47 100.0 30 ............................................... TTGATCAGCTTTATATTGTTCCGGATTTCT 143803 47 100.0 30 ............................................... ACAGTAGCTTGTTCATTTTGGAAGTCCACT 143726 47 100.0 30 ............................................... TGAAAGGTTTAGGAGCTATTTCGGGCATCG 143649 47 100.0 30 ............................................... CGCAAATTATTTTTCTTGCAAGGACTCAAA 143572 47 100.0 30 ............................................... ATTATGACAATTGGTATTATATCTTACCTG 143495 47 100.0 30 ............................................... CAATAGCAAACCGATAAAGCCTAAGCTATC 143418 47 100.0 30 ............................................... TAAAGGCAGTGATAAAGATGTTATCACTCG 143341 47 100.0 30 ............................................... AGAGATGAAAATAAAGACAAATGGGTCTGG 143264 47 100.0 30 ............................................... CCTTAATTTCTTTTTATTCATTGACTTTTG 143187 47 100.0 30 ............................................... GACGGTTATGAAAATAGCAAACGCAAAAAA 143110 47 100.0 30 ............................................... GTTTGTTACAGTCAATTAAACAGCAATATC 143033 47 100.0 30 ............................................... AGAGAGGAAAACAAAGACAAATGGGTGTGG 142956 47 100.0 30 ............................................... TTTGCCTTTTCCAATCGTGAGTTATATTTT 142879 47 100.0 30 ............................................... TACTACTTCTTTTTCTACTAAGCTTTGTGT 142802 47 100.0 30 ............................................... AACCCAGTTTCTGATGAATCCCCTAATGTT 142725 47 100.0 30 ............................................... CCAACCTTTTACGTGTTTTTCTTTCTGAAA 142648 47 97.9 30 ......................................C........ TACAATGCTTTCGGTATTCGTTATTATAAT 142571 47 100.0 30 ............................................... CGTTAAGGAGTTCGAGGGTAAAGATGTTTT 142494 47 100.0 30 ............................................... ACTTACAATCGTGATTGTATTACTTCTCAG 142417 47 100.0 30 ............................................... TTGTGATACGGAAAACTTTAAATAACGAAT 142340 47 100.0 30 ............................................... TATCAAAGGTCTCGGAGACAAAAAAGGACA 142263 47 100.0 30 ............................................... ACGTACATTTGCAGTGTAAATAATTCAGTA 142186 47 100.0 30 ............................................... TTACGATGACGGATTAAACAGAGGCGTATT 142109 47 100.0 30 ............................................... TTGTTGAAAAATGTTGTATTAAAAAACGTT 142032 47 100.0 30 ............................................... AATGCAAACGCAAATAGTGCGGTTTTACTT 141955 47 100.0 30 ............................................... ACAAGCATTTATGGATTTGGACGCTTGGTA 141878 47 100.0 30 ............................................... AATGGATGTTGTGGTTTCATCAGCTCTGTA 141801 47 100.0 30 ............................................... ATAAGCGAAAAAAAAACAGTGGGTTGAATC 141724 47 100.0 30 ............................................... GTGAATAACTCACAAATAAACATAGCAGAA 141647 47 100.0 30 ............................................... ATAACATAAACATATCCGAACTTTCAGAGG 141570 47 100.0 30 ............................................... ATAACATAAACATATCCGAACTTTCAGAGG 141493 47 100.0 30 ............................................... TGCATTGTGTTAGTCATAACGATAAAAGTA 141416 47 100.0 30 ............................................... AATGAGTTTATAGGCAATAGAATAGATAAA 141339 47 100.0 30 ............................................... CAATTGATTATGAGTTTGTTAAAGGATTTA 141262 47 100.0 29 ............................................... AGGAAGTTACAAAAAAAAAGCCCGAAAAA 141186 47 100.0 30 ............................................... TGAAAATGATTGACGGCGTGCCTGTAGTAG 141109 47 100.0 30 ............................................... AAAGCATAAACATTTAATTTTGTTTGTGCT 141032 47 100.0 30 ............................................... ATTAATCGTCCTCTTAATGAATGGGTTATA 140955 47 100.0 30 ............................................... TTTAGTCAATTCCGGATCAAATTCTGATTT 140878 47 100.0 30 ............................................... ACGATCTTTAGTGAAATCGTCCCACAAATC 140801 47 100.0 30 ............................................... ACTACATAAATAAGTTAAAGCATCAAGGTC 140724 47 100.0 30 ............................................... AGAAAATCAAATCTGAAAGAGACGTGAATT 140647 47 100.0 30 ............................................... AGCCGAAGTAACGGCACAAATAAGAAAAGA 140570 47 100.0 30 ............................................... AAATCATTAACGATTTTAACGCTAATGTAG 140493 47 100.0 30 ............................................... AGAGCCTATGTTAGTAGAAAATTGGGGACA 140416 47 100.0 32 ............................................... AGATTGGGATTTATTTTTGCCACTGAAAGCAA 140337 47 100.0 30 ............................................... ATAAAACAAGATGTATAGAGGAAGAAAAAC 140260 47 100.0 30 ............................................... ATAACATAAACATATCCGAACTTTCAGAGG 140183 47 100.0 30 ............................................... AAATACAACAAGCAATTATGCAAAGACAAA 140106 47 100.0 30 ............................................... AAGGCTTCTTCCATATTTTTTTTTAATTCT 140029 47 100.0 30 ............................................... ACAACGATAACATCGCACTGAATAATTTAT 139952 47 100.0 30 ............................................... AATAACTGTTTAATAACGACACAAAAATAA 139875 47 100.0 30 ............................................... CTAAGAAGCTATCGGATTTGATTACTGCCA 139798 47 100.0 30 ............................................... GCCTATCCGACTGCCCAATGGTCTCCACGC 139721 47 100.0 30 ............................................... AAACTACAATAGCTCCATAAGGAGGGAATA 139644 47 100.0 30 ............................................... GATTACGCTTCCGCAATTCGTGATGCTATT 139567 47 100.0 30 ............................................... TATTTGGAAGCCACAAAAAGAAGAAAGGAA 139490 47 100.0 30 ............................................... CTCGTGTGCGGTTAGCTCTTCAAAAGCTAA 139413 47 100.0 30 ............................................... ACGATAATGGTTCAGGGAAAGATTCATTTT 139336 47 97.9 30 ........................G...................... TTCTCTTAATATGGCTAATTCATTTACTAA 139259 47 97.9 30 ........................G...................... CTTAGTTAATCATTACTTAATAAATCGGTT 139182 47 97.9 30 ........................G...................... GTAAGTAGAGTATTTTCATTACAATAAATT 139105 47 97.9 0 ........................G...................... | ========== ====== ====== ====== =============================================== ================================ ================== 72 47 99.9 30 GTTGTAACTAATCACAAAGTTACGAAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCTGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAGACCAAGGCGATGCAAAAGGCGGCGAATCTTTTCCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTCCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTTGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTCAGCCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAATAAAAATAATCCTCTGACAGACAGAGGATTATTTTTTGAG # Right flank : CACCGCTCGTTTGATAATTAACCTTAGATTCAACCCCCAAGTGCAATTTTTTATGCCACGAATTTATAAAATAAATTTTTAGGTTCTTCAAAATCTAATGTTAATCTCGGTCTTCGGTTAATTTTATGTTGAATTTCTTTAATCTTCTCTTTGCTGATTTTCTCAAAATAAGTACCCTTAGGGATATATTGTCGTACAAGTTTGTTGGTATTTTCACTCAATCCTCGCTCCCAAGAACAATACGGATTGGCAAAATAAAAATCACAACTTAATTTCTTGCTAATATACTCATGTTCAGAAAACTCTAATCCATTATCACTGGTAATGGTTTTCACATAATCTTTATACGGAAGCAAAGCGTATATCATTGCTTTGGCTAAACTTTTTGCATTTTTACCACTTAACTTCCTCATTATTAGAAATTTTGTTTTTCTTTCTACAATCGTCAGAATCGCTCCTTTATGTTCTGCCCCCACAATTAAATCTACCTCAAAATGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGAAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 20675-19314 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVG01000022.1 Capnocytophaga canis strain CCUG 25240 NODE_22_length_20782_cov_6.111402, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 20674 47 100.0 30 ............................................... ATGTCCCTTTTTAATAATTAACAATTAATA 20597 47 100.0 30 ............................................... TTATAGAAGTTGCTGAAACAAAAAGAATGA 20520 47 100.0 30 ............................................... GGATAATGAAGATAACAAATTACGCTATAT 20443 47 97.9 30 ................................G.............. TTTTTTCATTTGGATGTTAAGTCTCAAATT 20366 47 95.7 30 ........T.......................G.............. TTGTCTCGGGCAACTTTCCGTACGATGAAG 20289 47 95.7 30 ........T.......................G.............. CCTATACTATTCGCTAATCACTATTCCCTC 20212 47 100.0 30 ............................................... TCAGGACTTGACATTGAACAAGCGAAGAGA 20135 47 100.0 30 ............................................... CATTGAGCAGATGAGTAGACAATAAACACA 20058 47 100.0 30 ............................................... AGCCGAAGTTTCTTTAATAGTTCTTCCAAT 19981 47 100.0 30 ............................................... TCTAAACAAATCGGATTTTGTCTATCATTT 19904 47 100.0 30 ............................................... TTACTTCCCGATGCTATCGCTACGTTTATT 19827 47 100.0 30 ............................................... CATTGAGCAGATGAGTAGACAATAAACACA 19750 47 97.9 30 ..........................................G.... TTTGAGCGATTATGGATAGGTTCTCTGACA 19673 47 95.7 30 ........T.................................G.... TTTGAGCGATTATGGATAGGTTCTCTGACA 19596 47 95.7 30 ........T.................................G.... GCCGAGCTAAACGCATTGTAAGCTGAATGC 19519 47 95.7 30 ........T.................................G.... TGCTCTTTATGCCATTTTGAAAGGTTTTTT 19442 47 95.7 30 ........T.................................G.... TAAATCCTGCTTTTCTGCGAAAGCCTCCAC 19365 47 76.6 0 ........T..............A..CG...T.....TC...GT.CG | CCCT,T [19324,19329] ========== ====== ====== ====== =============================================== ============================== ================== 18 47 97.0 30 GTTGTAACCAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : AAGTTTTTTTACTTTCTCTCTTTTTTCTTTGGGCTAGCCCAAAGAAAAAAGAGAGAAAAACTATCCCAAAAAATTGCACTTACTAATGGAATTTAAGAACTTTTGAA # Right flank : ACTTCAAATAATGAAGGTTTAAAGTATCCATTACAAAAGATTTCAAGCAGTAAATTATGTCCTCGTCCTTTTTCTGACGTAAGATGTCGAGAAAGATGATAAAAACCATCCTCTTGCTTTTCGTATTTGATTTTTTTTAGCCAAAATCCTGAACGTGTTATGTATAGCCAATCTTGAAATTGGAAAGGTGCATAGCGACAGTCCCAATCAGGAGGATAACCTTGAAGTAATGTTCTGTACTCTATGCTGGAAAGACGAAAGTCGATGCATTCTTCTGCTTCCCAATGCACACTATCGGGATTTGGGTATTGGACTCCGTAGATGATTATATTATCTTGCTTATTCATTTTATAAAGAATTAAGGTTTTTATTTTCAACGTGTTAGCTTTCGTGTTTTGGAATTTAGAACTAAGGTTTTGTTCGTTTGCTATTGAACTTTAGAGAACTTGTTTGTGTAAATTTAGTTGAGCATCAAATGTTTTTATAGAAAGGAATTTACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACCAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //