Array 1 212782-213907 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXL01000004.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 618 scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212782 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 212843 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 212904 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 212965 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 213026 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 213087 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 213148 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 213209 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 213270 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 213331 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 213392 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 213453 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 213514 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 213575 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 213636 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 213697 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 213758 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 213819 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 213880 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230166-231829 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXL01000004.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 618 scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 230166 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 230227 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 230288 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 230349 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 230416 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 230477 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 230538 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 230599 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 230660 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 230721 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 230782 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 230843 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 230904 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 230965 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 231026 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 231087 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 231148 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 231209 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 231270 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 231373 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 231434 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 231495 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 231556 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 231617 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 231678 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 231739 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 231800 29 96.6 0 A............................ | A [231826] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //