Array 1 1173-2160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOY010000034.1 Pseudomonas aeruginosa strain PAH9 NODE_34_length_64272_cov_9.077216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1173 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 1233 28 100.0 32 ............................ GCAGTCCCAGCAACAGCAATCTAGGCCGTCTC 1293 28 100.0 32 ............................ TCCGAAAGGAGAAAGACGATCGCGAGGCGCGC 1353 28 100.0 32 ............................ TGACAGGCAGGAGGACAGAATGAGCAAGCATA 1413 28 100.0 32 ............................ ATGTAGAGCGACCTGAAACCACCCACTGGATG 1473 28 100.0 32 ............................ GCGTGACCTGTTGCATGTAGCACTGGCAGACC 1533 28 100.0 32 ............................ TATTCGCCACCAGTATCTGCCCTGCTTGCGGC 1593 28 100.0 32 ............................ AGCTTTCTCAGCCATTTCCGAGGCGCAAGATA 1653 28 100.0 32 ............................ ACGAGATTCTGTGAAACCACATTGGATATAAG 1713 28 100.0 32 ............................ GACAGCCTCTGTGGCGGCGTAGTAGCCGCCGA 1773 28 100.0 32 ............................ AGCGTGACCCGCTCTTCCTGGGCCTGCTTGAA 1833 28 100.0 32 ............................ AGGCGTTCTCTGTCGGGTTCGGTCTTGTCGCG 1893 28 100.0 32 ............................ AACCTGCGACGCTGAAGGCTTGGCATGGAGTC 1953 28 100.0 32 ............................ ATGCCCAGCCTGCCGAGGTTACGACCTTGAGC 2013 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 2073 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 2133 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12339-10684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOY010000034.1 Pseudomonas aeruginosa strain PAH9 NODE_34_length_64272_cov_9.077216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12338 28 100.0 32 ............................ TGAGCAACTCCTGGCGGACTGGATAACGACCC 12278 28 100.0 32 ............................ TGACCAAGGCCGCCCAAGTCCTGATCTTCGGC 12218 28 100.0 32 ............................ ATTTAACGATTCTCATTCTGTCCTCCTGCTAT 12158 28 100.0 32 ............................ GTTTCGTGGTACTCAATGCGCGCCTCGCGATC 12098 28 100.0 32 ............................ ATACCCCGTAGGGTACAGGACTGTCGAAAGAC 12038 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 11978 28 100.0 32 ............................ TAAGCGCCCCCTTGCGGGTTGGCTCAGGCCCT 11918 28 100.0 32 ............................ AAGAAACAGCGCCTGTTCGTCGACGAGTACCT 11858 28 100.0 32 ............................ ATGCGGGCGAGGGCGGTCTGGGAGAGCAGGCC 11798 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 11738 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 11678 28 100.0 32 ............................ ATCAAGTCCGAACTGGGCAATGACGGGTTCAG 11618 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 11558 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 11498 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 11438 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 11378 28 100.0 32 ............................ TCGGACTCAGGCGGACTTGCGCCAGGCCATGC 11318 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 11258 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 11198 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 11138 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 11078 28 100.0 32 ............................ AGTCCCTGGGCAAGCGCCTGATGCCCGGCGTA 11018 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 10957 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 10897 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 10837 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 10777 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [10753] 10711 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTAGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 97802-97346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOY010000007.1 Pseudomonas aeruginosa strain PAH9 NODE_7_length_203551_cov_9.131882, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97801 29 100.0 32 ............................. TCGGGCAGGCCGTCGTATCGTTCTTCGTGATC 97740 29 100.0 32 ............................. GACGCGAAGGCTTGGGTAGATGGCTATCACGC 97679 29 96.6 32 ...........G................. TTGCGCTGGTAGCAGCCTGGAGAAAATACCCC 97618 29 96.6 32 ...........G................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 97557 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 97496 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 97435 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 97374 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 107552-106973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOY010000007.1 Pseudomonas aeruginosa strain PAH9 NODE_7_length_203551_cov_9.131882, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107551 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 107490 29 100.0 32 ............................. TCGATGCGAGACTCCAGCCCGGTACGAGACAT 107429 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 107368 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 107307 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 107246 29 100.0 32 ............................. CCTGCATCAGATGCGGCCTCCTTCACGCGGGC 107185 29 100.0 32 ............................. CTGCTCCAGGGCAGCAATTCCAACGGACTGGG G [107174] 107123 29 96.6 32 ..A.......................... ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 107062 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 107001 28 79.3 0 A..........A..C.....-..A....T | C [106992] ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGTTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGAGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATCGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //