Array 1 3067593-3065852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028729.1 Salmonella enterica subsp. enterica serovar Thompson strain HFCDC-SM-846 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3067592 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 3067531 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 3067470 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 3067409 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 3067348 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 3067287 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 3067226 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 3067165 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 3067104 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 3067043 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 3066982 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 3066921 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 3066859 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 3066797 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 3066736 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 3066675 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 3066614 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 3066553 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 3066492 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 3066431 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 3066370 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 3066309 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 3066247 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3066186 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3066125 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 3066064 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 3066003 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 3065942 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3065881 29 93.1 0 A..............A............. | A [3065854] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3085011-3083763 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028729.1 Salmonella enterica subsp. enterica serovar Thompson strain HFCDC-SM-846 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3085010 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 3084949 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 3084888 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 3084827 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 3084766 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 3084705 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 3084644 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 3084583 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 3084522 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 3084461 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 3084400 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 3084339 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 3084278 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 3084217 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 3084156 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 3084095 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 3084034 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 3083973 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 3083912 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 3083851 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 3083790 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //