Array 1 89-1337 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUN01000011.1 Corallococcus sp. H22C18031201 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 89 36 100.0 35 .................................... TATTCGAGATACGCCTCGACCCGTCCCGCAGAGAT 160 36 97.2 36 ...A................................ TCATATGGCCGGCCTTGTATGTCCTACTGGCCACCT 232 36 100.0 36 .................................... CTGGTTGTTGTAGCGCGGGGCAAAAAGCTGAATGAG 304 36 100.0 34 .................................... ACTCCCAACGCATCATCCACGAAGGAAGTAGCCA 374 36 100.0 34 .................................... TCGTTGGAATGGACATTCACCGGCAATCCCATAG 444 36 100.0 36 .................................... ACGCTGGTTCGAGACGCGCGGAGCGGACGCCCCGCG 516 36 100.0 37 .................................... TACCGGGGGCCGCTGTCAGTCGCGGCATGGAATACCA 589 36 100.0 35 .................................... TCGATGGACTGGTGAGCCGCCAGCGTGCAACAGCG 660 36 100.0 35 .................................... ACGGCATCGGGTTGAGCACAGAGACGCCCGGCGAT 731 36 100.0 37 .................................... GCAAACGACGGCACGCCGTCAAGCCACGACAGGTCTC 804 36 100.0 37 .................................... GGCTGGACGAGTACGCAGGTGATGGCGGTGCTCAAGG 877 36 100.0 34 .................................... CGCAGGAGATGGCTGCCAAGGGCGTGGAAGCCCT 947 36 100.0 35 .................................... TCGAGCATGGGGGCCTTGGTTCTGCGATGTCGCGA 1018 36 100.0 34 .................................... CAGCGGCCTGCTTCTTCAAGTAGGTGAAGGTCAG 1088 36 100.0 37 .................................... ACGCAAAGGAGGACGAGGAAAAGGGCGGCAAGCGCGA 1161 36 100.0 35 .................................... CCGAAATCTTCCTGTCAGCCAACAACAGATTTGGG 1232 36 100.0 34 .................................... TCGTCGGGGTAGGCGTTCTGGATCCCGGGCTGTT 1302 36 69.4 0 ...C.GA..T...C.....A....T...CG.C.G.. | ========== ====== ====== ====== ==================================== ===================================== ================== 18 36 98.1 35 GTCGCAGTAGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CACTACCCCATGGCCGCACCCTCCTACCGCTTCAACACGACTGGAGGCCGACCTTCTTCCCTACCGAAATAGGTTCTAAAGCTTGGACG # Right flank : CGAATCTCGTCGGAGGTTTGTCTGTATTGGGTTGGCGGCTGTAGTAAGGCGAGGGCAAACGGCCGAGGGGTGTCTCTTTCTTCCGCGGAGAGGCAAGTTCAGGGCAACGGGAGTGAAGGCTGCGCTTGCGTTGTCCTGGTCACCACATTCACGTGGGGTAAGCTGAGGATATGGACGTCTCTCGGGGGAGTTGGCTACGCCGCGCAGCACTTGTGGGCATTGCCGCAGCGGGCTTGGCGGCGTGTGCCGAGGGACCGCTCGTTGCGGTCCCCAGCTCCGCCCGCCGATGGGATGGACCACCGGTGACGGTGTCTGGCGGAGGGCAGTTCAAGACGGTCATCTACTTTGGGCCCTGGCAATGCAGTGCTCAGCTCATGGCATATTGCCGAGAGAAGTGCGCTGGGAGCGGGCATGTATTGCAGGGGTGTATGTGGCTCGCAGACATCAAGATGGACTACCAGGGGACTCTGGTTCGGGCTGGGAGTCGATTTGGCATGACG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTAGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 377121-382867 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUN01000005.1 Corallococcus sp. H22C18031201 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 377121 37 100.0 34 ..................................... CACCCTCGATGGCACCGGCACCCGCTTCGAGCGC 377192 37 100.0 32 ..................................... GCGGTGCTGAGTCAGAACGTCCTGGACGCGAA 377261 37 100.0 32 ..................................... AGAAAGCCGACGGGGTGTCCAGCGAGGGCACC 377330 37 100.0 32 ..................................... CGTACAGCAAGGAGCAGTGGACGAAGTATCAG 377399 37 100.0 34 ..................................... TTTCACGGAGGAGAGCGCGTCCATGAGGTTGCCT 377470 37 97.3 34 .........T........................... CACTCAAAGATTGACGCCGCAATCCACAGGCTCA 377541 37 100.0 35 ..................................... CATACCGGCGTCTCGATGTTGAGGGGGCGAGGATG 377613 37 100.0 33 ..................................... AAAGGAGCAGGCCATGGATGAGTATACGTCGCG 377683 37 100.0 33 ..................................... TTCATATGAACCTCACGGCAGCGTGTGGGAGCT 377753 37 100.0 32 ..................................... GCCAGGGCATCCGCGAGCCGCGGGGCGTCGGA 377822 37 100.0 34 ..................................... CAACAGGCGCCCGCGTCGTTGGATGGCCGTATCC 377893 37 100.0 37 ..................................... GAGGAAGAGCGCTCGAAAGCGGAAGCGGAGCGCAAGC 377967 37 100.0 34 ..................................... GTCTCAGCTTAGCCATGCCCCGAATATCCACGGG 378038 37 100.0 34 ..................................... AAACGCTCTTTCCTGTAGGGCGTCCTCCTCTTCG 378109 37 100.0 33 ..................................... GGGCGCGGGCTCCGCAAGTGGACTCACCTCGAC 378179 37 100.0 35 ..................................... GGGGCCCCCGCCCCCTCCCCCGCTTCTGCCTCGCG 378251 37 100.0 32 ..................................... CAGACAGCGCGAGGAGTTCGCGCGGCTCGCGC 378320 37 100.0 32 ..................................... CTCTTCAAAACCGGAGACGAGCCGGGCGCCGC 378389 37 100.0 35 ..................................... CGGTCCAGCCCGGCGGCGGCTCGGAGGGGGACCAC 378461 37 100.0 35 ..................................... GAATAGGAAGAGGTATCCATTGTCCTCTGCTTCCG 378533 37 100.0 35 ..................................... CCTTCAGGTCTATCGCACGCTGGTTTTCGACTCGG 378605 37 100.0 35 ..................................... TCTGAATGGGCCCTTGTCGGTTACCAGCTTGACGA 378677 37 100.0 34 ..................................... GGGTCCGTGAACTGAGACACCAGCTCAACCCACA 378748 37 100.0 34 ..................................... TGGTCGTGAGGCGGACACCCGCCGTCCACTCGTC 378819 37 100.0 33 ..................................... TCTCCCTCGTATGGGGAAATCGTGCAGCCACCG 378889 37 100.0 32 ..................................... AGTCCGGAGGATTTCGCCGTCTCGCGAGACGC 378958 37 100.0 32 ..................................... CAGACGAAGATGCTGGGATGCGGGTTCGCGGG 379027 37 100.0 33 ..................................... GACCCAGCCCGCATTGCAGTTGCGGTGAGCCAG 379097 37 100.0 32 ..................................... CTGTTTGAACTCGGAAACCACGTCGCACTTGA 379166 37 100.0 34 ..................................... GAGAGATTGGGCACGACCTACGCCTCCCATGGCG 379237 37 100.0 35 ..................................... GAGCGTGGACCCGAGCGTGCGTCGCCAGTGCATCA 379309 37 100.0 36 ..................................... CTTTCGAGACAACACGAAGTCCCCAGCGCCAACCCA 379382 37 100.0 32 ..................................... CTGGTGCGCTCATCGCGGAGATTGGCGACATC 379451 37 100.0 32 ..................................... CCGGCTTCACCAATGAAAATCTGCTCAATCAT 379520 37 100.0 35 ..................................... CGCGGGACACCCTACGAGCGCACCGTGGATGTGGA 379592 37 100.0 34 ..................................... GGGGATGGGCGCACCCTGGACACGCTGGGCCAGT 379663 37 100.0 33 ..................................... GCCCGGACCTGCGCGACCTTGTCATAGACACGC 379733 37 100.0 40 ..................................... GACGTGACGACATTCGTGCGCGAGTCGCGGCCCTGGTCCT 379810 37 100.0 32 ..................................... TGCTATTTGCGCGATGGGTGCGCCTGCGTCCT 379879 37 100.0 35 ..................................... CTTGGCCTTGGCATCCGCCACGGACGTGTCGCCCG 379951 37 100.0 32 ..................................... GCGGGGGGCTCCCGCGAGGCGGCAGGCGGGGG 380020 37 100.0 33 ..................................... AACACAGCGAGCACGAGCCGAACCCCTCACAAC 380090 37 100.0 35 ..................................... CCGCCGACGGCACCAGCCTTGCCGCTGCCGCCGGA 380162 37 100.0 32 ..................................... CAGAATGGCACGAGAGCACCATGCCCCATGAA 380231 37 100.0 34 ..................................... GAGGACCCGGACGCGTGCCCGGGGCTGCTGCCCG 380302 37 100.0 33 ..................................... GTGCCCTTGCGCGACTCATAGGAGCCGTCGTAG 380372 37 100.0 33 ..................................... TGGAGCGCGCTGCACGAGCAGGATCAGTTCATG 380442 37 100.0 35 ..................................... AACAACGTCTCCCTCGGCAAGCAGGATCATCAAAT 380514 37 100.0 33 ..................................... CGGGAGGTGATCCGCCGCCATGCGGGCATCACC 380584 37 100.0 33 ..................................... AAGCGATTCGCGAAGGCGCCGCGCCGCCTCGAA 380654 37 100.0 32 ..................................... CGACAGGCTAAACGGCTTGGGGGGCCTGCGTG 380723 37 100.0 33 ..................................... CTCAATGAGGAGGAGTTCTCCGTGGACGTGCTG 380793 37 100.0 32 ..................................... GACCCGTTTTTGAAGGGCAGCCTGCTCAACAA 380862 37 100.0 35 ..................................... GCGTCGGTCCCGTCGTAGCCGCCATCCTCCTGGAG 380934 37 100.0 32 ..................................... TGCCTTCGCGTCCCTCAGGGCCTGATCACTCG 381003 37 100.0 32 ..................................... TAGATGAAGACATGCTCACACCGTTGAGCGAT 381072 37 100.0 33 ..................................... CCGCAGCTTGTCACTCAACAACTCGAACTCCGT 381142 37 100.0 32 ..................................... CCGAGCGCACCGGGCATCGCGGTGCGCACGAC 381211 37 100.0 32 ..................................... AACAGGTAGGACGGGAAAGGAGACTGCGAAAT 381280 37 100.0 32 ..................................... CAATCCGCGCGCGCATTCCTCTTCTCGCGGAT 381349 37 100.0 33 ..................................... AACGAGGTGGCCCCGCGTCGCGCAGTGAAGGCG 381419 37 100.0 35 ..................................... CTACGCAGCGGATCCGAGACGTCCTCCGTCTGCAC 381491 37 100.0 34 ..................................... GCCGCTGCGCTGAGGTCCTTGCGCGCGCGTGAGT 381562 37 100.0 34 ..................................... ACCACGTTGGCGGACATGGCGACGGCCGCCGGTC 381633 37 100.0 35 ..................................... GCCTCCTCCCGCACACGCCGCAGCGACGCCACCGG 381705 37 97.3 35 .............C....................... TATGTGTCACGCGACCAGGGCGCTCCCGGCGTCGT 381777 37 97.3 34 .............C....................... CATCACCGCCTCGAACAGCTTGCAGGCGCGGAGC 381848 37 100.0 33 ..................................... TGCTTCTCGACGAGTCCTCGGTCCACCTTGGAC 381918 37 100.0 33 ..................................... GTGGAGTTCTGCGAGGCCGCCGCGCCCGTCATG 381988 37 100.0 34 ..................................... TCGACGCCCGACGACGCGTCAGCATCCCTCCACA 382059 37 100.0 32 ..................................... CGCCCGTTGATGGCCCTCCGTCGTGACCAATC 382128 37 97.3 32 .....A............................... GCGAGGGCGGAAGCCTCAACGCCAGCTCAGCC 382197 37 97.3 33 .....A............................... TTGCGCCACTCCTCCATCGCCTTGGCCCGGTAC 382267 37 100.0 35 ..................................... CCGTCGTCCCGCGTCGGCGCCACGTCCAGCACCCA 382339 37 100.0 33 ..................................... AGCTCGCGCCGGCGAGCGTTGACCGCGTTGCCC 382409 37 97.3 33 ..........................C.......... GACTGCTCGGGCCTGGTGACCTCGTGCTGGCAC 382479 37 100.0 32 ..................................... TGGGACTGCGAGACGCGCCACATGTCCGGGGA 382548 37 100.0 33 ..................................... GACAAGGGGCTGAAGGGGCCAACGGGCTGGAGT 382618 37 97.3 34 .............................G....... TCCGCGAGCGGCTCGAACTCCGTTCGCCAGACCG 382689 37 94.6 33 ....G.................C.............. CGCCGCGACGGCGGCAGCCTCAACGCCAGCTCA 382759 37 94.6 34 .........T.....T..................... GACATGGACGCGTGCACGGTTTATCGCTGGCGCA T [382774] 382831 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 82 37 99.6 33 GTCGCTCCTCGTGACCGCGAGGAGCGTGGATTGAAAC # Left flank : TCGACGAGCTGCTCGCGGGCGTTGGCGGGGAGGTTCACATGGCTGGTGGTGTACATGGCGCACGTCCCTCGGGTTTGGGGTTCCAGGTCGAAGGGTGGGGATTCCCGCTGGGCCTGGCAGGCCCGGCCGCCCGCCTGCTGAGCCGCACGGACGAGGGGCGTCTTCTGGACAGTGCAAGTCGTTGGAAAGGGAGTGTCCCCATTGACCGCACTGTTGGGTTCCTATCCCCGCCGAGTGGGTGCACGCGGAAGCGAAGGGGATGCTATGGCGTCACGGGGGAGCAGAGCGCTCGGCGGGCGGGACGCTGGTGAGGGTGAAGGCGAGCGCGAACCTCTCCCGATGCGAGCTGCGTCGAGGGTTCGCGCTCTTTGAAATCGCCAATAGTCATCCAGGGTTCGGGCCCGAGCCCGTTCTATTCCGTCGCGCGGAGGCGCCGCGGAAAGGAGGTTCGCGGAACCCGGTCAATTTCCGCAGGAGTTCCAGTACATTGGCGAGGCAGA # Right flank : TACCCGTGCAGTCGGACTCGGAGTCAGGGCCAATCGTCGCCCTTCGTGTCCTCGTGGTTCTCGGCCCCTGGGCCAGGCGCGACAGGTCGGGCCCGGTGCGGTATGCGGGGAGGCGATGCTCGATTCTCTGTCCCTGGATGACTGGGGCGGCACCGGTCCGGTGCTCCACTTCGCCCATGCCAATGGGTTCCCTCCTGGCTCCTATCGTCAGCTCATCGAGCGTCTGACGCCGCACTTCCATGTCTACTCGTGGCGCGGCTCGTGCTTCGTGCCGGGCTCGGAGCCTCGCTCGCTTCGTCGTTGGGAGGAACTCGCGGACGAGATGGCTCAGCTCCTCCTCGACCGAGGATTCGAGCGCATGATCGGGCTTGGGCACAGCATGGGCGGCGTGGCCACGCTGTTTGCTTCACTCAAGTACCCGCGGCTCTTTCGCTCCGTCGTGGCGCTGGATCCCGTGCTGATGACGGGTGCTCGGACCTGGGTGCTTCGCGCCGCATCGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGACCGCGAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 359848-356527 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUN01000009.1 Corallococcus sp. H22C18031201 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 359847 36 100.0 39 .................................... CTCCGACAGCAGGGTTTCGTGGTGGGGTACCAGTCTATC 359772 36 100.0 37 .................................... TCCCAGGTCCGCAGATCCTCGCAGCTCACTCCTTGCG 359699 36 100.0 39 .................................... CTGCCAAACCAGCGCCTCCGCAAGCTCTCCCAGATGGCC 359624 36 100.0 33 .................................... CTTCTCGTCCATCTGGGACTTCGCCTGATTCAA 359555 36 100.0 32 .................................... GCGCAGGAGCACCACGCGGGCGAGACCACGAT 359487 36 100.0 38 .................................... GACAGGAATTCTGAAGCAGGTTCGTCAATCCATCCCAT 359413 36 100.0 38 .................................... CCCGTTGAGGAAGTCAGGAGACAGCGAAGTGATTCGGA 359339 36 100.0 34 .................................... CAAGCGGGCGGAGGGCCCAGGGCATGACGATTCG 359269 36 100.0 36 .................................... CTTCAAGCTCATCGCCATGGCGGGAATTCGGCGCAT 359197 36 100.0 35 .................................... TCCACAGTGGCGGCGAGCTGTTCATCCGTGAGGTG 359126 36 100.0 34 .................................... CCTCTGGGCGCGCCAAGGGCGACGAACTGGATGG 359056 36 100.0 34 .................................... GCGTGCGGGGACGCCTGCAGCGCGGTAGCAATGT 358986 36 100.0 36 .................................... ATTCACCTGGGACGGCAAATCAATCCAAGGCTCCAG 358914 36 100.0 33 .................................... TTTTCCAAGCGCTTGGAAACCTCGGGCGAAGCG 358845 36 100.0 35 .................................... CGCTGGTAGACGAAGGACGTGCCGGACACCGGGTC 358774 36 100.0 36 .................................... TTCCATCCGCGTGACGTCCAAATCAGGTTGCACGTC 358702 36 100.0 34 .................................... GTGTCGCTCTTGAACGCTTCGCAGGGAATCGGGG 358632 36 100.0 33 .................................... AACGGGTGACGGGCGGCTAGGAGGGGCGAAAAA 358563 36 100.0 36 .................................... GCAAGACCGACGACAACGGCCACGGCGGAGGGGAGG 358491 36 100.0 35 .................................... TTCGTCTGGCGCACTCGCCGCCTGGGCAGCCGCGA 358420 36 100.0 34 .................................... ATGCAGAAGGCGCAGTCTCCTTAAGGGCAGTCCA 358350 36 97.2 35 ...........A........................ TTAGTTCTGGTGTCCGGGTGGTTTGGGCCCGCCCG 358279 36 100.0 35 .................................... CATCGCGCGTTCGGCAAATCACGTCGAAGCTATCG 358208 36 100.0 37 .................................... CTGCGCTGCGCCATCCTCGTTGGGGCCACGCCCCAGG 358135 36 100.0 37 .................................... GATCTTCCAGCCAGCCGCCATCGGGCGTTCTCTCCAA 358062 36 100.0 37 .................................... CAGGTGAGCCCAGAGAACTCGGAGCGCGGCAGCGGCC 357989 36 100.0 37 .................................... CGAGGCGCTGCGCGTAGGAATCGTCGGGCTCCGCTAC 357916 36 100.0 35 .................................... CCGCGCTCGGACCACTCCACGGACGTGGCCTCCGT 357845 36 97.2 38 .......................T............ TTTTTCGTCCGAAGCGACCGTAGCAACACCGTAGCAGT 357771 36 100.0 36 .................................... GCTCCGTCCTCCCAGGCCGCCTTGGTGACCGTCTCT 357699 36 97.2 34 .................A.................. CGTGCTCCGGAGTTAAGCGGGTTGCGAGGAATTA 357629 36 97.2 34 .......................T............ ACGGAGAGTGAGTGCATCCCATCGGGCCGGGTCG 357559 36 97.2 34 .......................T............ TTGACGGTGTGGAGATTGATGCCCAATTCGAACA 357489 36 100.0 37 .................................... CGCGAGAGCGTCTCGTGCACGCCGTCGGTGGTGAGGA 357416 36 100.0 36 .................................... CTCGCTGGCATTCTCGCGCTCGCCCTCGGCAAGCGG 357344 36 94.4 37 .G.....................T............ GCATGTTCCAGGTCCACGAATGCGCACTTGTTGCACT 357271 36 100.0 34 .................................... GCGCCGCTGCGCCGCGAAGAGGTCCAGATCCAGG 357201 36 100.0 35 .................................... CAAGGTCAGCAGTCTCACTCTGACCACCCGTGTGA 357130 36 100.0 33 .................................... AGGTGAGCAAGTTATCTATATTCCCGTGGACAG 357061 36 97.2 36 .......................T............ CGGCGGTGGTAACTCTCAAGGGACAGCGTCACCGTA 356989 36 97.2 34 .......................T............ GCGCAGGCGTTGACGTAGGCGGGGGCAGTCGTGC 356919 36 100.0 36 .................................... TCGACAGACCCACTCACGCCGCAGTCGGCACTCCAA 356847 36 97.2 35 .......................T............ CTCCACACAGGAGCCTCATCCAGCGCTCCCGCCGC 356776 36 86.1 34 A..T.AG............A................ GCAGTTAAGAATGATTGCAGAGTGCTGCTTCTTT 356706 36 88.9 35 .....A.C.........C..............A... TACAGAAACGTAGGCATCGTGGTCACGTCCAAGTA 356635 36 88.9 37 .....AG......C.........T............ GTGTTACCGGGGGCACACACGTCATACTTTCGGGACA 356562 36 97.2 0 .......................T............ | ========== ====== ====== ====== ==================================== ======================================= ================== 47 36 98.6 35 GTCCCGATAGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGGCCAACACGGTCCGGGTCCGCGAGTACCGCATCTTTTCGATGTCCCAAGAGTCAATGTCCCTCCACACCGCTGTGAGCCATAAATAGGATGCCAACCGCCGGCCGATCGCGCGCGACGGCGACCGGCACAGGTCATGGACCACGTGCACACATTGCTGGTAGACGGATAAAGGGGCGGCTGCGGTTCGTTCACGCCGCACCCATTCTCGAAGGTGATCAGGGAGGGGACGTCCGGCGCTTCCCGCTGTGATCAAGCGAACAATCAAGCACTGGCGCGTGGCGGCAGCGGTGCGGAGCCGATTGCAGTAAAAGCCGAGTCAGAATCAGAGGTTGGCGCTCTTTTACAGCTAAATAGGTGCATGCAGCCAGAAACCCGAATGGTTCCGAGAGGTTACCAGGAGGGTCATCTGCCACCGGGGTGCAACCAGGGTCACCGCAAGGAGGTGCTTGAATTCGAGCCGGTAACTACCCAGGATCGCACGGGATTTCAGGCGCACA # Right flank : AGGATGATGCGCTTTTGGAAACGCCGCCCAACGTTCGCGAGTCGCGGTAGCCGCGTCCGATTCGACGGGGCCACACTCCTCATCCACTTGGGCCTCCGTCAGCGACCATGCCGAGGTACGACGCGCCCAGGTGGCAGTGAGAACCGGGACAGACCCTGTCGCATAAACTCAAGTACGCGGGACCCTCCCCAGCCGTTGAGAGCGGCGCCTTTGAGCCGCACCCCTATGCGGAGTCGCCGCCATGCAGGGCGCAACTTGCGACGCTCTCTTCAACCCGTGCGTTGCACAGCCGCAACGGTGCTGCGCCTTGCCACTGTTTCGCGGCCCCTGAGTTGGCGTCAGCGGGCTATTGCTGACCCGCGTTCGTTAGTGCTGGGGGTGTTGCGGGGGCTCCGGGTTGGGCTATCGCCTTGAGCTTTCCGATGGTGGGGGGATCCACGAGCACGATTCCCGGAAGAGAACCAACGTCCGGGACATGCTCGGGCGGGTCGTCCTTTTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGATAGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 372026-374199 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUN01000009.1 Corallococcus sp. H22C18031201 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 372026 36 100.0 35 .................................... AGGCCGCTCAAGACGCTTCTTCATGCGATTAAGGA 372097 36 100.0 35 .................................... AAGTCCCAGCGGGGGCGGACAAGTTTGCGCGCCAG 372168 36 100.0 34 .................................... GCGCTCCACGTCTCATAGGGCTTCCCAGTGTCCG 372238 36 100.0 34 .................................... TGCGAGAGCCCGAGCGACACCCGCCGACTCCGGA 372308 36 100.0 34 .................................... CTGTTTCAACATGATGCACGTCATCCCCACGTCC 372378 36 100.0 36 .................................... CCGTTTCCGGAAAAACGTAGAGGTTGGCTGAGTCGT 372450 36 100.0 35 .................................... TCAGCGGCTGAGAGTCGCCCGAATCGTTCCGTGCC 372521 36 100.0 36 .................................... GAAGGGCCTCCGCTTCGTCCTGCTGAACTGGTGGTG 372593 36 100.0 34 .................................... TTCTCCCTATCGTAGTTAGGCGCGCTGTAGTCGT 372663 36 100.0 35 .................................... TTGACGTCGCCCGTGTGCCCGTAACCTATGGTGAC 372734 36 100.0 35 .................................... ATTATGTCGCTGTCCGAGACGGACGGGACGGATTG 372805 36 100.0 35 .................................... TTCGGAAGCTGGTTCGTGACTTCCGAGCCTCGAAG 372876 36 100.0 34 .................................... CATCAAGTCATCATCCAGGGTGATGCAGATTTCC 372946 36 100.0 37 .................................... ATGCCGTTCACCACGTACCCGGCCCGGCTACCCACCC 373019 36 100.0 34 .................................... AAAAACTTCAGCATGCGGAATGCTCCTCTCAATA 373089 36 100.0 35 .................................... CAGCCCATCTCCTCATTGGTCAGCACCAGCCCACC 373160 36 100.0 34 .................................... TTGAGAACATCGGCATAGTCGCGCTTCAAAGAGT 373230 36 100.0 34 .................................... GAGGGCCGCCATGAGCTTGGCCATTAGGCATTGG 373300 36 100.0 36 .................................... CACCCGCCCTTGTCATCCATCCAGCGCCCGTTTCTG 373372 36 100.0 37 .................................... TCAAGGATCAGCAAGCTCGGATCCGAGCGGGCGTCGA 373445 36 100.0 34 .................................... GATACAGAGCACCTGGAGGGGACCGGGCCTCATT 373515 36 100.0 35 .................................... CACCCACTCAATGTTCCGGTCGAGCTGGTCCACTG 373586 36 100.0 38 .................................... GTCGCGAAGTGGACGGCCAACAGGCCGTCACCGGCCGC 373660 36 100.0 36 .................................... ACAGGTAGCTGTAGACTTTTGGCGCGAGCCCTTGGA 373732 36 100.0 37 .................................... ATGCAGCGTGCCAGAATTAATCGCCTGATTTCGCACA 373805 36 100.0 33 .................................... AGGAAGATGGTCTCTCGGCCATCCTCGACCATG 373874 36 100.0 36 .................................... CTCAAGAGTGAGTTTGGGTCGGAGCGTCCCTATTAC 373946 36 100.0 36 .................................... CGCGTGCCGGTCTGTCCAACAAATCTCCGTCGCCCC 374018 36 100.0 38 .................................... TTGACGCCCCACTTCTCGAAGTCGTCGGACGTCGCTCC 374092 36 100.0 36 .................................... GGGCGAGGTCATCTCCCAGGAGACCGCCCAGGCGCC 374164 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 31 36 100.0 35 GTCGCAGTAGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGGGACCCGAAGCGCTGGCGCAAGGTGTACGCCCTGCTGAAGGGGTATGGGGAGTGGCTCCAGCTCTCGGTGTTCCGGTGCTCGCTGACCGACCGGGACCGCGAGCGGTTGCGCTGGGAGCTCGCCCGATTGATGGACTCGGTGGATACCTTGCTGATAATTGGACTGTGCGGTGAGTGTGTCGAGCGCGTGAAGGCCATCAACCCGAAGGATGGCTGGCCGGAGGAGCCTCCACCCTTTCGGGTCTTGTGAGGTGTTGAACGATCAAGCACCTGCGCGTGGCGGAGCGCCGGAAGTGGGCGCAGAGCGAAAAGCCGAGTCGTGGCGCGGGGTTGCGGCTCTTTGACAGGTGAATAGGTGCATGCAGTCGGAATCCTGAGTGATTCCAGTGTGTTAGCGAGAGGTCCCGTGGCCACAGGTGTGTCGCCGAGGCCAGTCAGGGGAGGTGCTTGAATCCATGCTGGCAAGTGGCCAGAATCGCTCGGGATTTCAGACGGACA # Right flank : AAGCGCGTCGGCTCCATGAGCTTTCGCACAGGTAGTCGCAGTAGCCGTGTGGAGTTGCCCCCGTCAAATCGGACACGGTCAGAGGGGTGATGCTGCTCTTCGGTACTCGATGGGGGAACGCATCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTAGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 66655-70917 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUN01000015.1 Corallococcus sp. H22C18031201 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 66655 37 100.0 34 ..................................... ATACGCTCGATATAGGCGAGCGTCGGCGGTGTCG 66726 37 100.0 33 ..................................... TGGAGCGCGCTCCATGAGCAGGACAGCTTCGCG 66796 37 100.0 33 ..................................... CAGTCCTGGTCCCAGGGCCCCGACGGGCAGTGG 66866 37 100.0 34 ..................................... ACCGGCTGGCCGCGGACCAGTGAGTACACAGACG 66937 37 100.0 33 ..................................... TCGTGACGGCCAGCATTGCCGGTCAGATTCTCG 67007 37 100.0 32 ..................................... ATCAATCGCAGGGTTTCAAGAGCTTTGTCCGA 67076 37 100.0 32 ..................................... CTCAAAGGCTGGGCAAACTCGCTCGGCAAGGT 67145 37 100.0 33 ..................................... GATTCCGCCAAGCGCCTGACGCCAACCCGCCCC 67215 37 100.0 33 ..................................... TGATCGCGCACGGAACGGACAAGGTGGCCAGCT 67285 37 100.0 33 ..................................... GCCACGTCGACGCCCGACAGCGTCACGTTGACG 67355 37 100.0 32 ..................................... GCCTCGTACCTCCTGGTCAAGTACCGGCTGTG 67424 37 100.0 35 ..................................... GTGAACTCCCCCACCAACTTCACCTATGCGGAGTG 67496 37 100.0 34 ..................................... CGACATCTGGACTCTCAAACATCTGAACGTCCAG 67567 37 100.0 32 ..................................... CGACCTGGTGACCGGGCCCGCATCGTCATCCC 67636 37 100.0 36 ..................................... ATGCGCTACATGGAGCCGTACCATGACCCTCGCGAA 67709 37 100.0 32 ..................................... GACAACCGGCGGACCTCGGCACTCCCTCGCGT 67778 37 100.0 33 ..................................... GATGCGAGTTGCGCGAACTTGTCCGCTCGCACG 67848 37 100.0 33 ..................................... CGTGCGCCTGGACATTGCGCGCGACAGTGCCCA 67918 37 97.3 34 ..T.................................. CTCTTCAACCATCCCGGACAAGGTAAGTGCTGGG 67989 37 100.0 31 ..................................... GTCGAGGTCGCGAGTGCGCTCGGGCCGAGCG 68057 37 100.0 33 ..................................... ATGCCGGCAGCACCAGCGATGCCCATCATTGTG 68127 37 97.3 31 ..............T...................... AGCCGGGACGCCACTGTCAGACTTGCATTTG 68195 37 97.3 36 ..............T...................... GCCAAGCGGGGCCGGGAGCTCTATGTGGACCCGGAG 68268 37 97.3 35 .........T........................... GGGCTGTGGAACAGACGAGTCCCGCGACGGCGCGT 68340 37 97.3 33 ........................T............ AGTGTCTTGCCACGCACCACGCGGGTGCCAAAC 68410 37 100.0 34 ..................................... GGCAGATCCCGTTCTATCCGCCGGTGCCGCCCAC 68481 37 100.0 33 ..................................... AGCTTCTGCGCGAGCCCGAGCACCTGCGCTTGC 68551 37 100.0 34 ..................................... CGGAAGTGGTGAGTGCACCAGTGGCGGTCAGGAG 68622 37 97.3 32 ...................................G. TGGAGCATCGCCCACTGAGGCTGGAGCACTCT 68691 37 97.3 34 A.................................... TCCGGCTACGCCGTGGACACGGATGGCCTCGCGC 68762 37 100.0 36 ..................................... GACTGCTCGGGGCTCGTCACCTGGGCATTGCACGAT 68835 37 100.0 37 ..................................... CACTTATGCCGTAGCAGCTGAGCATCTGGCGCGGATT 68909 37 100.0 34 ..................................... CCGTGCCGACTCGCTGGATGGCCAGAGCCGGCCC 68980 37 94.6 31 ..................................CC. CCCCCTCAACCGCACTCGCACCTGCCTCCAG 69048 37 100.0 36 ..................................... GTACTTGTTGGTCAAATACCGGCTCTGGGGGGCGAG 69121 37 100.0 33 ..................................... GTCCGCAGGTTGAGCGCCAGCCAGTGCAACGCC 69191 37 94.6 34 ......................C...........C.. ATCCCACTGCGGGTCCGAATCGGGAAGCGAACGA 69262 37 97.3 33 ............................A........ TTGAGCGGATAGGTGCCCTCGCTTTCAGGCGCA 69332 37 97.3 34 .C................................... GCTCGCGTTGCCTCTGGCCATCGTGGGCTCAGTA 69403 37 100.0 32 ..................................... TGATCTTCGAGCGGCTCACTCGGCATCCGCTG 69472 37 100.0 35 ..................................... CGTGTGCCGCAGCCGCTGCGCCAAGCCGGGGGACA 69544 37 97.3 35 ........................A............ GCCCAGCTCGCCCGCGGCTTGGTACAGCTCGCCCT 69616 37 97.3 33 .............A....................... ACGATGATTACCCCTGCTCAGCGGCCTTGCAGG 69686 37 97.3 33 .............A....................... CACGCGGGCACCAACATCCTGCGCGGGCCCGTG 69756 37 94.6 34 .............A.............A......... GTGTCCTTGGCCACGGCCGCGCGCAAAAGATGCG 69827 37 97.3 33 ....................................T ATCCCGCTGGACTTCGACGCGGTGCGCTTGCTT 69897 37 100.0 33 ..................................... CGTCATGTCGTCCCACTCACGGATGTCCAGCTC 69967 37 100.0 35 ..................................... GCCAACAAGGGCATCGACGTGCACCAGTACATCGT 70039 37 100.0 32 ..................................... GAAAGGTTGAGACAGATGTTGCCGACGCCTTG 70108 37 97.3 32 .....C............................... AGGGTGGTCCAGTTGCGCGGCGGTGGCGACAA 70177 37 94.6 33 .....C.................T............. GACGCGTCCGACTATGAGCAGCCCTCGCCACCA 70247 37 100.0 33 ..................................... GCGGAGCGCGCAGCCGCCGCCATGGGCACACCA 70317 37 100.0 35 ..................................... ATCGTCAGTGCAAACCCGACAGGTGCAATAGCGAT 70389 37 97.3 33 ...............T..................... CCTGCTCGACTTCCTGGCGCACGCACAGGGCCA 70459 37 100.0 33 ..................................... CTCCGCCGCAGAGAGGACGCTTTCCACGCCGCC 70529 37 97.3 33 ...............T..................... GCGCCCTGCTCCACCGCTGCGCGCGTCAAGTGG 70599 37 97.3 32 ........G............................ GGCGCGGCGTTGCACTCCTCGGGCGTCCGGAT 70668 37 97.3 35 .........................A........... TCCAGCGTCACCGGCCCGAACTCACCAACTGCGCG 70740 37 97.3 34 .......................T............. GCGCAGGGCGTGGACGCCGCGTCGATGGACGTCA 70811 37 89.2 33 ....T........A...................G..T TTGCCCGCGCTACCGGGCTCCTCCTCGAGGTAG 70881 37 86.5 0 ...A..................G......T....G.T | ========== ====== ====== ====== ===================================== ===================================== ================== 61 37 98.4 33 GTCGCTCCTCGTGTCCGCGAGGAGCGTGGGTTGAAAC # Left flank : TGAAGAAGCTCACGGTCTTGATTTGCTATGACGTGCGCGTGTCGGACTCGGAGGGGCCGCGGCGCCTGAGGCGCATCGCGAGAGCCTGTCGGGACCACGGCGTGCGGGTCCAGTTTTCCGTGTTCGAGTGTGTCCTGGAACCGAAGGACTGGGTGGTGCTCCGAGCGCGGCTGTTGAGCGAGTTCGACGCCGCCGGTGACAGCCTGCGGTTCTATTTCCTGGGCGCGGACACGGCGAAGCGGACCGAGCACCACGGTGTCCGGCTGCCGCTGGATGTCGAGGGGCCGCTCATCCTCTAGACTGCACGGCTGCCGATGGCGCGCGCGCGAACCTCCGCCGGTGCGGGGTTCGTCGAGCGTTCGCGCTCATTGAAATCAACAATAGTCGTCAGGGGTTACAGGGGAGTGGAGCCCTATTCCCGGAGCGCAGCGGCCTCGAAAATGGAGGTTCGCGGAAACCGGCCCAATTCGTCAGTAATTACGGTAAGTTGGTCGGGCAGA # Right flank : TGTCAAGGCGGGGTTGGGTGGTCGCTTTATTCGTGGCGTCTGGCGATGGGCTCAGGGCTTTGGGGTGGATTGGGTCATCCGGTGATAGGTGATCGGCTTGTCTGGGGTGTTCTGCTGTTGCTCTGTGGGCGTGCTGCCGTTCTTCACATAGGTCTCGCTCCGGATGAAGGAGTCTTTCCCTCTTAGTGTCATCCAGAAGGCGTGTTGATGTGATTTGTCTTTGACCTGCAAGTTCGTTCCATCTCGGAAAATGAAGGACAGCTTGTCGGCGCTGCTTCCCTTCTCCAGTTGGAGACGGGGGGTGTTGCCTTGCGGGCAATAGTGGTCCGCCACCAGGGCGTCGCCATCCAAATGGTAGAGCGTCAGGGATTCGCGTCCGGGCGCGAGCGTCCAGGTCTCGACGAGCGTGGTGCCTCCCGCTGTGAGCCGGTACGTGACGCTGTGCGTTCGGCTGTCCTCGAACGTTCCTTCCCAGGTCCCCACCAGGGTCGTCAGTTGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGTCCGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //