Array 1 691183-693003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069079.1 Streptococcus parasuis strain BS26 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 691183 36 100.0 30 .................................... GGCAACCATCAGCAGCAATTCCATTTCTTC 691249 36 100.0 30 .................................... AATGGTATTCCAGTAAGTCTTTTCAGCCTC 691315 36 100.0 31 .................................... CTCCTTCAGGGATAGAATCGTAAACTGCTTT 691382 36 100.0 30 .................................... ACTAGTACTTTTAGGTAAAACTTTGAACGT 691448 36 100.0 31 .................................... CATCTCTGCTCATGTCTGGTGCTACCTCGTA 691515 36 100.0 30 .................................... TTTTTTTATTTTTTTTGCGAATTGATAAGT 691581 36 100.0 30 .................................... ATCCCAACCCATTTGCTTTGCAATGTAGCT 691647 36 100.0 30 .................................... CCCATCACGCACACGATTTAACAATCCAGT 691713 36 100.0 30 .................................... CAAGAAGCTGAAGCAGGATTACACGCCCGA 691779 36 100.0 30 .................................... AGATAGACTTCTCAAAGCCCAGATGGAGAT 691845 36 100.0 30 .................................... CAAGAAGCTGAAGCAGGATTACACGCCCGA 691911 36 100.0 30 .................................... AGATAGACTTCTCAAAGCCCAGATGGAGAT 691977 36 100.0 30 .................................... TTTGAATTTAGCAGATTATTCCAGGCTATT 692043 36 100.0 31 .................................... ATTACACGATAGAATTAATGTCCGCTGCATA 692110 36 100.0 30 .................................... GCGAGCTCTTACCTCTTCCTGTGTTTCCTG 692176 36 100.0 30 .................................... TTTATCAATTTTAGAAAATACAGGTGTAAT 692242 36 97.2 30 ...............A.................... CAGACTGTGGGACGGGCTTTTTTTATTTTT 692308 36 100.0 30 .................................... TGCCGTCATTTCTGAATTGTCACAGACTTT 692374 36 100.0 30 .................................... GAAGTCTGTTTTATTAAAGAATTGAACTTT 692440 36 100.0 30 .................................... CTGTTGCCAAGCGTGGAATACAATCATGGC 692506 36 100.0 30 .................................... TGCCGTCATTTCTGAATTGTCACAGACTTT 692572 36 100.0 30 .................................... AAAACACAGACTTTTTGCGAATAAACAGAT 692638 36 100.0 30 .................................... GGGTAGGAAGATAGTTGTTATGGCATTATT 692704 36 100.0 30 .................................... AGTACCATGAAATTGGCTGAGCTGTTGTTG 692770 36 100.0 30 .................................... TGGATATCGATGATGACGGATTGCCGTTTT 692836 36 97.2 30 ...........A........................ GCAAGTGTGGCAAGATTTCCTTGTGATTGT 692902 36 100.0 30 .................................... TCATTGATAGACTTAGCCATTGCAAATGTT 692968 36 94.4 0 ..............................T....T | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTGCAAGTTTATCAATTTTTGAATAAAAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTTTGTTTTGGATAAAGACTATTTCTTACTAATGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : TATACCTACGATATTTTTGGTAATATTTTCTAATTTTTCTTCCCCTCTTTTTTAAATTTTCTTATAATAACTTACCCACTTCATGCTATAATAGTTATATGAGTTTTTAAAAGGAGCATGAAATGTCAAACTTAAAAGAGCAGGTTGGTATTAAGGCGGCGGAATTTGTAACGGATGGTATGGTTGTTGGTCTAGGGACTGGTTCTACAGCCTACTATTTTGTTAAGGAAATTGGCCGTCGGGTTGCTGAGGAAGGGTTACAAATTATTGGTGTAACGACCTCGCATGCTACGGCAGAGCATGCTGCGTCCCTTGGGATTCCACTAAAAAATATTGATGAAGTTGAGTATGTAGACTTAACGGTAGATGGGGCTGATGAAGTAGATGGAGCCTTTAATGGAATCAAAGGTGGCGGAGCAGCCTTATTAATGGAGAAAATTGTTGCGGTCAATAGTAAAGATTGCATCTGGATTGTTGATGAATCCAAAGTAGTTGAAACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //