Array 1 12210-12045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVW01000016.1 Candidatus Chrysopegis kryptomonas strain JGI-23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 12209 31 96.8 36 G.............................. GAGTTTGTGTTCAAGGGACCTTTTCTTGAACACAAT 12142 31 100.0 36 ............................... CCTTTAGCGGTTCGCCTTTGCATCAGCTTACCTTCA 12075 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 98.9 36 AGTGTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : AAAAAGATTTATTTTTGAAGTAAGGTTGAATGGAAAGTTGAGCTGTCATTTTTCACAAGCGTTTATATTTTTACGTGGTTGAAAAAAACTAAAAAAATTTTTGTTTTATTCAAAATCGGCGAAGCTCGGCAAAGCTACGAAGTGATCCCCCTAAGGTCCGAAAGGACTCCCTTGGAGGTTCTCCTAAGGTCCAGAGGGCTCCTTAGGAGAGTCCATAGGACCTTAGGGAGAGGCAAAGGTGCGAGATTTACAAAAAGCTCGTTTTTCATTTGTTATTACGGTTTCCGAGAACCTCGTTAACAAGTTAACATTTGTGAATTTGAATATCTTGTTGATTTACAATCATTTTCCCTTGCTCTGACGCAAATCTTGACACATTGTCAGGGAGGTCAGCGGAAAAATCAAGGGTAAAAGTTAACACAGAAGGACTTGACTTTTGGGGTAAAATTTATTGTATTTAAGTGTGTGAATTGGTTTATTTAAAGTTTTGTTTTACCGTG # Right flank : GGGAATAACAATTGGATTTTAGGGGAGTTTTTAGGATCTTTGTTTGGTTTTTTGTCTCACCTCCTGCCCCCTCTCTAAGTGTTTAGAGAGGGGAGATAGATCCCTTAAGGGGTCACTTCGCCAGGGGGATTTATTTTTTTCGCTGGGGGCGGAAGAGGAAGAAGTATCTAAAAATTCTAATTGTAAGGTATGATAAGAATGAGAAGATTGACAGCAGGATGTAGGTTTCTCTGTTCTCAAGTCCTATTTGCAAGATTTTTATCACAGTTACAGAGCCGAGCAGGAGTGCGAAAAATGGTCCAAGGTTTATGTATTCGCTTTCTTCTAATGTTCTCAATTTTTTTATATCTTCGTCTCTAATTAGTTTTTGTGATTTTGCTTGTTGAAGTGCTGATTTTATGATTGTTGGGTTTCCTTTGGATATTCTGAGGATTTCGTTTTTTAGAAATTCTTTTGTTTTTGTGTCAATTTCAGTTATGTATGTTTCAATCAGGTAGTTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 12691-13776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVW01000021.1 Candidatus Chrysopegis kryptomonas strain JGI-23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12691 30 100.0 37 .............................. ATTATTTCAAAATTTGCTTTATCAATTAGATGTCCTG 12758 30 100.0 37 .............................. TACTTTTTTGTAAAAATGCTGGGGCAATGCGCCCCAG 12825 30 100.0 35 .............................. TCAGGTTGCGTGGGGATACACAATTAAAAAAAGGA 12890 30 100.0 35 .............................. TGTTTTAATAACCGTGCCTTTAAAAAATTAAAATC 12955 30 100.0 36 .............................. TTTAATATCTTCAATCGTAGCATCGCTTTCGGAAAT 13021 30 100.0 36 .............................. CAGATTTTTACTTTACGGCCCCCCAGGAACAGGAAA 13087 30 100.0 36 .............................. TTTTCTTATCAAACAAAAACGGAAATGTAAACCACC 13153 30 100.0 36 .............................. CTGACAGAAGAATTGCTTGCACTTTCAAATCCTAAC 13219 30 100.0 35 .............................. TTAAATTACTTATCGTGATAACTCAGGTGTTCTGC 13284 30 100.0 36 .............................. TTCTTGTTGTTTACGCTGGGGAAGAGGAGTTTGAAA 13350 30 100.0 36 .............................. AACTCTGCGAATGTTTTTTAACATATTTCACAAACT 13416 30 100.0 37 .............................. AAAATTGATGGTATATTTATAGATGAAGTTTTAAATG G [13434] 13484 30 100.0 35 .............................. ACATCAATGAATTTCCCAATTCTGTAATTATTTTC 13549 30 100.0 36 .............................. ATTTGCGGGCACAAGCATATTGGTATTTACGCAAAA 13615 30 100.0 37 .............................. ACGGCTTTAATTAATACTTTACAGGTTGCAAGAGATG 13682 30 100.0 36 .............................. TAAAAATGTAAAAACCTACAAGTGAACTGAAGACAA 13748 29 80.0 0 .....................-...AGCTG | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 98.8 36 GTGAGCATTGAACCAGTGTGGAATTTAAAC # Left flank : TGGTGAATATAATCCTTATGTTATACTTGTAAATTTGTATGAGATGATGGGAGAGTATCAGAAGGCGATAGATATTTTGAACCGTGTTCTTGCTTATTATCCACAGCAATATCAAGGAATTGTTAGAGATCGGATAGCGAGGTTAGAGGCGAAGATGAAAGAGGAAAAAAGATAAAAAAATTAAGCGCGCCCGGCAGGACTCGAACCTGCAACCCACGGCTTAGAAGGCCGTTGCTCTATCCATTGAGCTACGGGCGCGCATTTGTTTTGTTTTAAATTTAAGCATTTTTTAAGCAAAAATCAAGTATTGTTTGTTATTCTAGTCGTTGACAGGTTTTGAGAGGGGAAAGTTAACAGTTTTATTTTATGATTTGCGAAATTTTTAAAATTTCAAAAATTTTTCTTCAGTCGTTGACAGTGGATTTTTGCATTTTGCTCAACGACTTGAGAAAGTTTGAAAAAATTTGCGAAATTGAGCGAAATTTTGTAATTTTTCAACA # Right flank : GTCTTCTTGATTTTGAGAATTTAAATTTTTATATTCTTACTAAATAAGAACTTGTATGGTTAACTTATAGACGGTTGTTAATGATAAGTTTTTTATGATTTTATTTTTAGTTTGGGGGAAATTGAAAATCTAAGGATTGTAATTAATTATGGAATTTATTCCATCAAATTGGCTTTATAATGCTGGTGTTATTGGATTTTTGAGAGTTTTGGAAAGTGCTGGGGAAAATAAGGTTAATGTTGAAAATTTTTTGAAAGAGGATGGAGGGGTGGAGATTGATGATTTTGACAAAAAATTTTTAAAAGAAGTCAAAAAGGTAGATAATTACGAAATACCAAAATTGGCTTATTATTATTTGATTTTTAATTTCAATGAAATTGTCAATGGGGAAGCAAGTTCCGATGATGAAAAAATTAAGAAAGTTTGGGGCAAATTATTTAATACTTATTATAGAGGATTTTTTAATGCTAATACTAATTATTTGTTTCAGCATAGTAAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATTGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 16-3088 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVW01000040.1 Candidatus Chrysopegis kryptomonas strain JGI-23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 16 29 100.0 35 ............................. GAAATCAAGGTGGGCGTGAACTTGCTCAGTTAAAA 80 29 100.0 36 ............................. TTGGATTATCTCAGCTTAAAAGAAGGGCGGAAGAGA 145 29 100.0 35 ............................. ACAGCACCAAGCGATTTACCGGTTAACGATATTTC 209 29 100.0 36 ............................. GCGGTTGAACTCCAGTTAACTTGTTTTCAGAAAGTT 274 29 100.0 35 ............................. TTCCCTTTGGGACTTAATGCACCCAACAATCTACC 338 29 100.0 36 ............................. GATATTTTTTTATATCTGAAAGCGTGACAATCATCG 403 29 100.0 37 ............................. TTCCCCCCTTCTGAATGCTCCGGCGTTATTTTCTCAA 469 29 100.0 39 ............................. TTTTCCCCCAGTTTCTATTTACCTCGTGGGATTGTATCG 537 29 100.0 37 ............................. TGATAGTGGCGGAACATCAATTCAGGGGAGTGTGTCA 603 29 100.0 36 ............................. GATATTTTTTTATATCTGAAAGCGTGACAATCATCG 668 29 100.0 37 ............................. TTCCCCCCTTCTGAATGCTCCGGCGTTATTTTCTCAA 734 29 100.0 39 ............................. TTTTCCCCCAGTTTCTATTTACCTCGTGGGATTGTATCG 802 29 100.0 37 ............................. TGATAGTGGCGGAACATCAATTCAGGGGAGTGTGTCA 868 29 100.0 37 ............................. GATATTTTTTTATATCTGAAAGCGTGACAATCATCGC 934 29 100.0 36 ............................. TATTTTCCCCCTGAGTTTTACCCATCGATTCATATC 999 29 100.0 37 ............................. TTTTGTATTTAAACCAGAAAAATTTTCTTGACCTTGG 1065 29 100.0 38 ............................. GCCCAAGACGCAAAAAAATCCGCTCCTGGGGGTGGGAG 1132 29 100.0 38 ............................. GCTTTTTTTGTATATGTGCTGTAATCTATTGTATTTGG 1199 29 100.0 38 ............................. CGCCGATATATTGCTTTTACCGCCTGTGAGAACGTGGG 1266 29 100.0 38 ............................. GGGGCAAGCCAAAATCCACACTTTATAGGAATATCGGG 1333 29 100.0 39 ............................. TAACTTCTCAATTTCTGCTCGGATTTCTTCAATTTCCCG 1401 29 100.0 36 ............................. GATTGAGGTGGGCGAGTGGATTAAACGGAATGGAGG 1466 29 100.0 36 ............................. CCTTAATTTAATTTTTTTTATTTGATTTTTAACAAG 1531 29 100.0 37 ............................. GCGCCAGACGAAGGGAGTTTCCCTTCTTTGGCGGGAG 1597 29 100.0 39 ............................. TTTGAAGATAGTATTTCATTGCAATTCTCCTCTTTTGGG 1665 29 100.0 38 ............................. ACAGAAGCGTTTAAAAGGGCTTTTGACAGGGTTAAATG 1732 29 100.0 35 ............................. TTTACGCTGGGGCAAAGGAGCGATAAAAGGGCAAG 1796 29 100.0 37 ............................. TTTTTTTGGGGAAAAGGACCTTTACAAGCGGTGTTGG 1862 29 100.0 37 ............................. ATGCAAATAACCCAAACCCTGCCCATATCCCCCAAGG 1928 29 100.0 36 ............................. GCGAGACCGTTCTTGTTTATCTCGAGTGCCTCGAGG 1993 29 100.0 38 ............................. GGGTAATTCGACAAGATTTCCTTCGCTTCACTCTCTGG 2060 29 100.0 38 ............................. TTTGTAAATGAATAAACACTCGTGCTTTCTCCCATATG 2127 29 100.0 38 ............................. CAAAAAAATTCTTCGCAAGTGAAAATTCATAAACCAAG 2194 29 100.0 38 ............................. GGCGTTGGGATAGGTTTTTTTTTCAAATCAGTAAAAGG 2261 29 100.0 38 ............................. TTTTTCTCTTCTTTTTCACATTCGCATTTTTCTTTTAG 2328 29 100.0 39 ............................. AAGCAAGTTTCCCAACTTGCATTAAACCCAAACTTTTGG 2396 29 100.0 38 ............................. TCTTTCACCCTTATAAATAATTTTAACTTTGCAACCTG 2463 29 100.0 37 ............................. TGTAAGCCATTGAAAACACCTCCTAAATTTTTTAATG 2529 29 100.0 39 ............................. TCTTACGGGGATATTGGGTGAGGGAGCGACATGGCGTGG 2597 29 100.0 38 ............................. GTATATATATCCGCCATAGAGCGTTTGCCTGAAATTGG 2664 29 100.0 36 ............................. TAATTGTTCTTTCATTACCAAAAAAATTTTTCCCCG 2729 29 100.0 37 ............................. TAAACACTTAACAAAACTCCATCGGGCAATTTCTCAG 2795 29 100.0 36 ............................. AATTTATTCCCATAAACCCCCAAATGTTCATACGCG 2860 29 100.0 38 ............................. TAACTTGCCCACGCCTTCATCGCAGACCCAAACGCATG 2927 29 100.0 38 ............................. TCGGTAAGTATTTTCTCAAGAGAAGGTATTTTAGCAAG 2994 29 100.0 37 ............................. AGTTGACAAATTGAAAAAATATCATTATATTTATTAG 3060 29 82.8 0 ...........TTC............G.T | ========== ====== ====== ====== ============================= ======================================= ================== 47 29 99.6 37 TGTGAATTGAACCTGTGAGGGATTGAAAC # Left flank : CAAGGTTGGGTCTTGT # Right flank : TGAAATTCTTGATTCATTGCCTAAAAACTTATTTCACGACAACTATGGATATTTTGTGTTAAGTTAAAATCATAGGAGGGAGATTAAAATGTTAAGGAGTTTATTTTTAGTTTTAATTTTGAATTCTTTAATTTCTTGTGATAAGTTATTTCCACAGCTATCATCTACAGGTGTTCCTGATCCTTGGGTCGGGGCAGGGGTTTATCTTTTTGATGGGCATCAAATATTTTCTGACAATAAGCTATTTGCAAGGGAATTTAATCAAGCGGGTGATTTTGCTAATCTAAATGTTAAAAGGTCTTTCGAGTTAAAAGATTTAACTAGGAAAGTTGATGAAAGGGTAAGGGTTGGGGGAAGCCTCGGCATCACGGGTTTATATCCCATCTTGCTTTTTCGCTCTGATATAAAAAAGGATCACATTGGTGGAATGAGTACATATTACATCGGTGATGGTCCGTGGCAGAGGGGATTTATAACGACAGGGGATTGGAGGGAGGATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGAATTGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 118262-123289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVW01000006.1 Candidatus Chrysopegis kryptomonas strain JGI-23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 118262 30 100.0 37 .............................. GTGTTAAATGTTTTGTTCTAACATCAATTGCTTGGTT 118329 30 100.0 39 .............................. GCAATTATAAAAGCAATGGTTGAGGAGTTTATCAGGGAA 118398 30 100.0 36 .............................. CACGAACCTGCTCCAAAATTCCTTCCCTTACGCTCT 118464 30 100.0 37 .............................. CTTTTTATCCCCGCCCTCCAGATTGCGTTATCAATGA 118531 30 100.0 38 .............................. ATTCCCGCCGTATCACGGGCAATTTCGGTTAAACCCAG 118599 30 100.0 36 .............................. AACACTTTTTTTAAAAATAAAAAGGAAATTGATTTA 118665 30 100.0 38 .............................. AAAGGCGCAGGATCTTGTTGAGGAATACTGCAATCAGA 118733 30 100.0 36 .............................. AATGATATGATTTCTAATCCTTTTGTATTGTATCTT 118799 30 100.0 37 .............................. TTTATAATATCTTCAGTTGTAATCTCTTTTAATTTTC 118866 30 100.0 37 .............................. GTTTAAACGAGCTGTGGTGTTAATGGGCGAGATAATG 118933 30 100.0 37 .............................. CCAGGCGCATTGTTCGCCTGGTGAGGGTGTTGCCCAA 119000 30 100.0 36 .............................. ATTTTTGCAAAATTTAAATCCTGTCGTCACTAAATA 119066 30 100.0 36 .............................. ATACATGTTCTTGAATGATGTGATTGTTTTTAAGTT 119132 30 100.0 37 .............................. ATATTAAAGACGTGCAGCCACTACCCGCGGGTTGCGT 119199 30 100.0 37 .............................. AAAGCATTGGAAATTTTCCGCAATGCTCCCATTTTTT 119266 30 100.0 36 .............................. TATACATTTTATTATCCCTCATTAATTTTAAATTAT 119332 30 100.0 36 .............................. GATTGATGTTGTTGCGCAGGCTTTCGCGGATGATGA 119398 30 100.0 37 .............................. ACAAAGATAGATGTTTTCCACCCATTTTGTTGGGTGG 119465 30 100.0 35 .............................. ACCCCACCACTAACACTATGACCCATTACATCTAC 119530 30 100.0 37 .............................. ACTGTTTTAAGCATTTTGACCTCCCTTATTTTTTTTA 119597 30 100.0 37 .............................. AATTAAGCGAAAATTTTTCTTTAATATGCTTTATTAA 119664 30 100.0 35 .............................. CAATACTTGTATAATAAGCCCAAAAATTCTTGCTA 119729 30 100.0 38 .............................. TATGTGATATAATTTTTTCTGACATCAACTCTGTCATT 119797 30 100.0 37 .............................. GTATGCAAACGATGTGCATATTTACGAAAATGTAATT 119864 30 100.0 36 .............................. TTTGCGCTTGTGATAACCATATTTTTCCCCAGTTGC 119930 30 100.0 37 .............................. AGAGCATAACCACAAACAAAATGTGCGACTTTATCCC 119997 30 100.0 37 .............................. TTATTTGGTCAATTATACTTCTTACCGCCGTCGCATT 120064 30 100.0 34 .............................. GGTAAAAACTCCCGGGGTCTTTTTTGCCCGGGAG 120128 30 100.0 34 .............................. TTATGCTTCCCATCGTTTGCGCTTGTGATAACCA 120192 30 100.0 35 .............................. CGATAATCAACAATTCGCAATTCCCGTCGTGGGGT 120257 30 100.0 38 .............................. CCGGAAATTTGATACTGAATTCTTAACACTATTTTATA 120325 30 100.0 38 .............................. GTGTTTTTCGCCCGGTTTCAACAGAGTATTTCCCGTTG 120393 30 100.0 37 .............................. ACTGAGATGTTTATCCCCTGCGCCCCGCAAACGTCGC 120460 30 100.0 36 .............................. AATTTCACTATAAATATATATGTTTTATTATTATTT 120526 30 100.0 37 .............................. TCTCTATCTTCAAAAAATACAAAATCAGCGAGTAAAT 120593 30 100.0 37 .............................. ACGCCACCCCAACTTGTGGCGGTGGCGTTGAGAGAAA 120660 30 100.0 36 .............................. GGTTATGAGCATTCTTATAAAACCGGGGGTTGTTTT 120726 30 100.0 35 .............................. AAATCCGCAAACCTTCCTTCTAAGCCGTGGGTTGC 120791 30 100.0 37 .............................. TCCCATTTCCCATTAAGGGAAATGGGAATTTTTACGG 120858 30 100.0 37 .............................. ATATTTTGTGTTCTTGCTATACTTCATATCAACCTGC 120925 30 100.0 36 .............................. ATCCTTAAATGTTACCCTGTGATTAAAAAGATATAA 120991 30 100.0 37 .............................. ACGGTAAATGAAATTCAAGGTCTTCGTGGTCTATACT 121058 30 100.0 38 .............................. AAGTATTTCATCTCAACTCATTAACTCAATTTGCCCTT 121126 30 100.0 38 .............................. TGAGAATTTTGTCAACGAAAGATTAAGCGAAATAGCGG 121194 30 100.0 38 .............................. ACCAACAAGCAAGCTGTTGCTATTAGAGTAACGAATGA 121262 30 100.0 36 .............................. CCTGTTTTAATTACTCCAATAAGTTTATCTTCATCA 121328 30 100.0 35 .............................. TTTATAATAAATTTTTTCTATTTTTCCCTTATTAC 121393 30 100.0 37 .............................. TTTTACAAGTGATGAGAATTTTAGATTTGATAAATTT 121460 30 100.0 36 .............................. TATCTTAACAACGATAATAAAAGTTCAATTTCATCT 121526 30 100.0 36 .............................. TATCTCGCCTTGCAAACAAGGCGAGATATGAGAATC 121592 30 100.0 37 .............................. CCCCGTCCCTGACGAGGAGACGATTTTCTTTTCAAAA 121659 30 100.0 34 .............................. TACCGGAACGAGAATAGCAGCAATTATTTTCCCA 121723 30 100.0 36 .............................. GGGTTGAGATTTATATTGAATTTTAATAAATTTTGA 121789 30 100.0 38 .............................. TCAAAAAATTCCTTTTTTGTCATATTTCCTTCCTCCTT 121857 30 100.0 37 .............................. AAGGAAGGACAAATGGAGGGACACAGGAGGGACGTAG 121924 30 100.0 38 .............................. GTATATACTTAAAAATTATTATGCAAGAACAACATCAT 121992 30 100.0 37 .............................. TAGAATTGTTTTTTTGTAAGCATATTTTTCTCCTCCC 122059 30 100.0 36 .............................. TGCAGCTTTATTATTCCATAATCCGACTCACACTCT 122125 30 100.0 38 .............................. ACTTCTCCTCCCTTTTTTATTTTTTTAAACCCCGCCCC 122193 30 100.0 37 .............................. TAAAGAGTCTAAATTTCCAGTCATTTTGTCCAAATGT 122260 30 100.0 38 .............................. TTTAAATTACCAACAGTATTCGTTTGTTTCTGTCGAAA 122328 30 100.0 36 .............................. AGATAGGCATCGACGGAAAAAAGGTAAGTTTCATAA 122394 30 100.0 38 .............................. GACAAATGCTAGACGGGCTTTCTTCGCCCGTCTTACGT 122462 30 100.0 36 .............................. TGAAGTTCATGGCGTCCAATTTTTTTTGTTTTTACA 122528 30 100.0 35 .............................. AAAGGAGCAAATTCCAATTTTTTTTGAGTTGAAAC 122593 30 100.0 37 .............................. ATCAATTTTGTGTAAAGTTTACGCAAATTGTTTATAG 122660 30 100.0 36 .............................. TCTCTTATTATCTTCTTCGAGTGCCTCGATAATTCT 122726 30 100.0 37 .............................. TGAGTATGATCCAGGTTCGAACACGTGGGTATCAAAA 122793 30 100.0 37 .............................. TTTAATATCTTCAATGCTTCATTTAAACGAGCTGTAG 122860 30 100.0 37 .............................. TAACAGAAGGAGAATATCGTGTTGAGGCTGTTACTTA 122927 30 100.0 34 .............................. AAAGCCCCATTACCATCAGGAAGATATACTTTAG 122991 30 100.0 37 .............................. ATTAATAAATATATCGTTCTTTCATAGTTTCTGTATG 123058 30 100.0 38 .............................. GGATTTATTACAAGTAATGGACAGTTGGGATTATCCTT 123126 30 100.0 36 .............................. AGTAATTCTAATGCGTTTTTCAAATTTGTTACAGAT 123192 30 100.0 38 .............................. ATACTTTTGTCAATCCAGGAAAAAACACGACTTATTAT 123260 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 76 30 100.0 37 GTGTGAATTGAACCTGTGAGGGATTGAAAC # Left flank : CGAGGGAAGTTTATGAAGCGATGGCATATCAAATTGCAAAAGAAATTGGGGCTATGTCTACGGTTTTAAAAGGTAAAATTGATGCAATTGTTTTGACAGGTGGACTTGCAAACTCAAAGATGCTTGTGGATTGGATAATTGAAAGAGTTTCGTTTATTGCTCCGGTGCTTGTTTTTCCTGGTGAAGATGAGATGCGAGCACTTGCGTTAGGTGTTTTAAGAGTTTTAAAAGGAGAGGAGCAAGCACTTGAATACCCGGGGCATTAGATTCGTTATTTCGTTTTCCGAGAACCCCGTAAAGAAGTTTACATTAAATCCGTGCAAAATCTAACTGTCTTTCAATAATTTAACCCCTGTCTGACACAATCCCTGACACTTTGTCAGGGAGGTCCTCGGAAAAATTCGTGCTTTGAGTTAACACTTTCCAACTTGACAAAGGCGAAAAAATTTATTATATTATAGTGTGTGAATTTGGTTGATTTAATTTTTTGCTTCGGTCTA # Right flank : TATTTTTTTAAACCCCGCCCCACCGCGGGGCGGGATAGTGTGAATTGAACCTGTGAGATTCTATGTTCAAAGTCAAGTTAAAAATTCGTTTTGCGTTGATTTTTTCTTAACTGAGTAGAAACATTGAATTATCAATTTTCTTGCGGAAGCTATTAGAGCAACTTTTTTAGGTTTACCTTTTGAGATTAGATTAGTGTAGAATGATTTAATTTTGGGGTTAAATCTGACTGCCGATAGTGCGCATAGGAAGAGAGTTGATTTTAGATATTTATTTGCTTTTTTAGTTGTTTTTTGGTTTTGTTTTATTTTACCTGATTGAAATACCCCTGGGGCAAGTCCAGAGAAAGAGACAAGTTCTTGCGGTTTTGAGAAATTAGATAAGTTATGAGTTTCGGCAATAATTACAGCAGATGCGATTTTAGAGATCCCTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAATTGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //