Array 1 108175-106208 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIDY01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain StVIM contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108174 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108113 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108052 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107991 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107930 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107869 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107808 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107746 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107685 29 93.1 33 ..........................A.C GCGTCACTACCGAGACCGAGACCGAGACCGAGA 107623 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107562 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107501 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107440 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107379 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107318 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107257 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107196 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107135 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107074 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107013 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106952 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106890 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106787 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106726 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA C [106721] 106664 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106603 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106542 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106481 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106420 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106359 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106298 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106237 29 96.6 0 A............................ | A [106210] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125737-124306 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIDY01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain StVIM contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125736 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125675 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125614 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125553 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125492 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125431 29 100.0 31 ............................. AACAGGAACAGGTAAAAAAGATTTGTCCGGT 125371 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125310 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125249 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125188 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125127 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125066 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125005 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124944 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124883 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124822 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124760 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124699 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124638 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124577 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124516 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124455 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124394 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124333 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //