Array 1 7-631 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOID02000699.1 Vogesella perlucida strain DS-28 NODE_1042_length_667_cov_1.755068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 7 37 86.5 38 .A...........CT...........TC......... TTGCCGCTGCCGGTGGGACCATATACCAGAATGCGATT 82 37 100.0 36 ..................................... AATGGGGCCTGCGAAGTGTCTGCCCTTCATCAGCAC 155 37 100.0 34 ..................................... GACTTGGATTTGCTCATCATCACGAGTAATTATC 226 37 100.0 35 ..................................... TCGACAGTGTAATCAAGGCGCTCTACCAATGGATG 298 37 100.0 36 ..................................... AGGCAGGGGCCAAACAGTAGCATCCCAGCAATGCGA 371 37 100.0 35 ..................................... CGAGCATATCGATGGTGCCGGCCTTAACCTTGGCA 443 37 100.0 35 ..................................... AAACTGCCTCAGCAAACCTTAACTAGCAAAAATAG 515 37 100.0 43 ..................................... AGGATGAGCGAACTTGGCAGTAGTGCGGGCGCGGCTGTCCCCT 595 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 98.5 37 CTTGAAATTCCCTTGAATCCCTATCAGGGATTGAAAC # Left flank : CGCCAAC # Right flank : TGCAGCATGAGTGATTTGTTCCATCAAAATGCAGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTCCCTTGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 419-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOID02000216.1 Vogesella perlucida strain DS-28 NODE_3840_length_418_cov_3.448980, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 418 35 97.2 35 -................................... CACTTACCACTTGAGTGTCAAGTGTTGCCGCCAAC 348 36 100.0 35 .................................... TGCAGTAGGAACCGTAAAGAGTTGTTGCGCGTTCC 277 36 100.0 35 .................................... CTATGAACTAAATACGCTCCGTTCCATAGCTAATG 206 36 100.0 41 .................................... GTTGCGAAAGGCGTATTAATTCTTTCCAGCGATTGGGTAGA 129 36 100.0 38 .................................... AAAAAAGTGGCAATTACATTTTTGGCCAATTTGATGCC 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 99.5 37 TTGAAATTCACTTGAATCCCTATCAGGGATTGAAAC # Left flank : | # Right flank : CTGCAGTAGGAACCGTAAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAAATTCACTTGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //