Array 1 1544688-1543439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032266.1 Streptomyces fradiae strain NKZ-259 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1544687 29 100.0 32 ............................. TCGGGGAAGACGGCTGCGGGGTCGTCTGCGGG 1544626 29 100.0 32 ............................. TCGCCACAAGCCTGCAATTCCAGGTGTTCGCG 1544565 29 100.0 32 ............................. CTGGCAGGGTAGCGGCGGATGAGATCGGCGAG 1544504 29 100.0 32 ............................. ATCTCGACGGCGCCCTTCCACATGCTGGTGAA 1544443 29 100.0 32 ............................. CTTTGCTGACCACCGGCCGCTTTGGCTGCTTC 1544382 29 100.0 32 ............................. CCCGTCCGCTCCTGCTCCGACAGCCCACCCCA 1544321 29 100.0 32 ............................. GCGAAAGTCATCTCCCTGGAGACCGCCATCCG 1544260 29 100.0 32 ............................. ACTCCTTCGGGGGCGAGGCCAGGCTAGGGGAC 1544199 29 100.0 32 ............................. CTGTTCGAAGCGGTGCCGGGGCATGGTGAGGA 1544138 29 100.0 32 ............................. CGTGAACATCATGATGTGACGACCCACCGCCG 1544077 29 100.0 32 ............................. CCCGTACGCCTCGCCTCCTGAACTGCCACCCG 1544016 29 100.0 32 ............................. CACGAGGATCATGGCGGCGCGTCATGGCCGCC 1543955 29 100.0 32 ............................. ACGTACAAGATCGCTTCTCCGTCCGGCAACGA 1543894 29 100.0 32 ............................. AACCGTTCGGCCGCGCCGGTACTGCTCATCAG 1543833 29 100.0 32 ............................. ACGGCAGGACGGAGCGAAGCCGTGAGCCGACA 1543772 29 100.0 32 ............................. CCCCGGCCGGATCGGCTCGGGGCGTGCGGTGA 1543711 29 100.0 32 ............................. CCCGGTCAGGACCGAGGAGAGGACTTCTCCCC 1543650 29 100.0 32 ............................. GCGATGCCGAGCCAGAACAAGGCCCTGAAGGA 1543589 29 100.0 32 ............................. CTTGTCGCTGACCTTGCGCTGCTTCCTCTCGG 1543528 29 96.6 32 ............T................ CCGCCCGGATACGCGATCTGGCCGCAGATCTC 1543467 29 79.3 0 .G...T....T.........C.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCGCTGACGTACGCCGGATCCTCGCGAATTGGCTTGTAGAGGAAAGGGACCTGAGCCTGAAACGGAGGAGTGATCTTGCCGATGTCATGCAACCCGGCCCAGAACGAGACCACTGACCGTGCCTCTGCCACGCTCAGGCCGAGCGCATCCGCAATGGCCGCCTTGGTCTCGTCGCTCAGAACGACATCCCACAGCACCTCGAACACCGCACTGGTATCAAGAAGATGGCACACCACCGGATACGGCTGCGACAGCCCGCTCTCCTTGCCCCACAGCCGAACATCCAGAACACAGTCCCCCGAGGCTCCCGCCTCGTCGAGCTTCAGCATGTCCACAGAGGTAGCACGCCCCACTGACAACGGCCCCAAATAGCCCAAGTTGACCCCGGCTTGAGGGGAGGGTCTTACACTCGCTGCGCGATGACAACGAATCGAGACGCATACACAGCGAGGGTCTGCAAAGAGATGGCAAAGCGGTCGAGTAAGACCAGGTCGCGAAGG # Right flank : TCGGCCCCGGCGCCCCCCAGGGTGGCGCAATGCAGAAACGCGCTAGGTGCTTAGAAGGCACGTGCTCTATCCGCTGAGCTACGGGGGCTGACCTGCGTAAACGCAGCTTCCGGGAGTTGTCCCCCAGGTCGCGGGGGAAATATGGGGAATCGCGGATTCCCGGTGACAGGGGGACGCGAGCGCTTCCTGATCGGGCAGTACGTAAGGTCTCACATTATCTTCACGGCCCCCGAAGGCTCTCACGGAAACAATCCCGCACCCCGTCGGCGTTGGTGATCTCCGAGCCGAGGAGGAGAAGGTGTCGGGCCTGAAGCTGTTCCGCACGGACACGACGAATAGCGGCATGACGGAGGTCATGCCGCGTCTTGCTGAGATCGAGGCCGATGTGCAGGGCCTTGTCGAGGCGCACATGGAGACGCTGCTGGGCGTGCGGTTCCTGGCGAGCGAGTACAGCACGGGGCCCGCCCACGGGGGCCGGATCGACTCGCTCGGGCTGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1554359-1556765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032266.1 Streptomyces fradiae strain NKZ-259 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1554359 29 100.0 31 ............................. CCGTCACCGTCCACGCGACAGGGCAGCGCGA 1554419 29 100.0 32 ............................. CCTCAACCCCAAGCGCGGCGTCGGCACCCTCA 1554480 29 100.0 32 ............................. ACGTCCGCAGACTCGCCCGGCAGTGCACCGTG 1554541 29 100.0 32 ............................. CTCGCCGAGGCCGCGCAGGATCACGACCAGGC 1554602 29 100.0 32 ............................. CGGCGCAGGCCGACCCCACCAGCTTTGCACTG 1554663 29 100.0 32 ............................. CGTCACCGAGATCCCGTCCATCAGGAGCAGGG 1554724 29 100.0 32 ............................. ACCTCCGCGGCATCCACGCCGGCATCGACCTC 1554785 29 100.0 32 ............................. CCGACACCATCGCTGCCCGCAACGACGTCCTC 1554846 29 100.0 32 ............................. TTCGAGGCGGGCCTGGACGACCTCTCGGAATC 1554907 29 100.0 32 ............................. TGACCCCGGGCCCGCCCGGCAGGCGAATGCGC 1554968 29 100.0 32 ............................. CAGATCTTCGGGTACTTCCCCACGCCCACCCC 1555029 29 100.0 32 ............................. CAGAGCGCTCCCTCTGTCTGGCTCTCACCGCC 1555090 29 100.0 32 ............................. TCCTGCTCGATGAGCCGCATGCTCACGGCGGC 1555151 29 100.0 32 ............................. CCACCGACGCGGGCCGCTCCTGCGGGAGGTGG 1555212 29 100.0 32 ............................. GCCGCGGAGAAGAACCCTGCGGTTCGCCTTCA 1555273 29 100.0 32 ............................. GCCGCGGAGAAGAACCCTGCGGTTCGCCTTCA 1555334 29 100.0 32 ............................. CCGCTCGACCTCTCGCCCGTGGCCGACCGGCT 1555395 29 100.0 32 ............................. CCTCACCTCCCGGCCGTAAGGCCAGAAAATAA 1555456 29 100.0 32 ............................. ACCGCCAGGCCCCGGGCGACGGCCGCGCGGGC 1555517 29 100.0 32 ............................. GAGTACCCGATGACCGACCCCTCCGAAGAGAC 1555578 29 100.0 32 ............................. GCGATTCTGGCTCAGGCTGATGCTGACCAGTG 1555639 29 96.6 32 ..................T.......... TCCGGGTTCAGGATCAGGTTCCGGTCGGTGCT 1555700 29 100.0 32 ............................. GTCTTCATCTTCGCCAGCCGCTGCTGAATCTT 1555761 29 100.0 32 ............................. ATGGACAACGTCCTCTTCCTGCCCCGCCCCGT 1555822 29 100.0 32 ............................. TCGGTCCGGCCGGTGAGAGGGCGCGGGCGAGC 1555883 29 100.0 32 ............................. ATACACAACTAAGGGTCTTTCTCGTCCTCACT 1555944 29 100.0 32 ............................. GTCTCGTAGAACGTCTCGGCGATCAGCGGGCC 1556005 29 100.0 32 ............................. CGGCGTCCGCCGCGTCCGCCGGTCTCGGGGAC 1556066 29 100.0 32 ............................. CTGCTCTGGCACACGGTGCTCAGCTCGATGTC 1556127 29 100.0 32 ............................. AACGCGTCGGGCTGCTGGTAGCCGGGCCGGGT 1556188 29 100.0 32 ............................. TGGAGGACGGCCTGCTCGACCAGGAAGCGGTC 1556249 29 100.0 32 ............................. GTCGACACGGACGGCTCGGAGCTGGCCGAGCC 1556310 29 100.0 32 ............................. TCCTGTTCGGCTGCTACCAGCCGCGCGACCTC 1556371 29 96.6 32 .C........................... CAGGTGGCCGCGCCGGACCCGGTCGCTGTTCC 1556432 29 100.0 32 ............................. GTGTAACTTCCGCGCGGCCCGAACCCCCAGCC 1556493 29 100.0 32 ............................. GTGAACCCCGCCTTCATGCCCGACGATCGCCA 1556554 29 100.0 32 ............................. TGCTCTCCGGGGCCGGGCAGGACCGTCTCGGC 1556615 29 100.0 32 ............................. AGGATGCCGAGGTCCACGCCGATCACCTCAGC 1556676 29 100.0 32 ............................. CGGAGCGGCCCTCTGGCGTGTCCAGTGGTGGG 1556737 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCCCCGCATAGTCACCGACATCCAGCAACTCCTCGACCCCGACCGCACCTACGGGCCCCCCGACCCCGCGGAACAATTGGTCGACCTCTGGGACCCCGTAGCCGGCTCCGTGCCCGCCGGCATCAACCACGGAAGCCAGCCGTAACCCTGCCCACGGAAGGACACCGGCCATATCCTCGATGATCGTCATCTCAGCCACCGCCGTACCGGACCATCTCCGCGGCGCCCTCACCCGCTGGCTGCTCGAAGTCACACCCGAGCTGTACGTCGGCACCGTCTCCGCCAAGGTCCGTGACGAACTCTGGTCAGCGGTCACCGCCTGCACCGACGACGGCATGGCAGTGCTCGCCCACCCCGCCGACAACGAACAAGGCTTCCAACTGCGAACCGCAGGCGCCCGCCGCCGCGAACCGATCGACTTCGACGGCCTCACTCTGATTGCCTTCCAGCGAGAAGGTCAAGAAATGGCAAACCCCGTCTAACGCGCCAGGTCACGAAGG # Right flank : GTCGTAGGTCATGAAGGCAGCGTGGCTCTCGGGGCGGGCGCGGTCTGGGCCAACGGTCCATACGGGGTGTGACCTAGGTCACTCGCTAGTGTTTCCAGATGTCGGGCTCGCCGCCCCGCCAGTCGATGAGCGCGGACCGGACGAGATCACCACGGGCACGCTCGAAGCCATACCGCCAGCCTGATCGCACGCACGAGAAGGCGCACGCTGGGCTACTCCAGCACGCCGAGGTCGCGTCTAGAGCACGGCCAAGATCAACGAAAGAACCCCCGGCCTACAGGAGGCCGGGGGCTGTAGATGGGTTCCGTTTCAGACAACGCGCTTGAAGCGGAGGCAACGGAGGAGCGGGAGGAGCGCCAGACCTGTCATCTCGGGCGGGACCTGCGGAAGCAGATAGATCACGATGCCGGCGATAACGGCGTTGTACGCGTCCTGCCACCCGGGGCGGCGGTATTGGAGTCTCACGGGCTTCCAACGCTGTGATTGCATGGTGTTGTCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1557621-1557950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032266.1 Streptomyces fradiae strain NKZ-259 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1557621 29 100.0 32 ............................. GAGTAGGTGTCCGTGAGCGTGGGATGTTCGGC 1557682 29 100.0 32 ............................. GCGGACCGCGATGCCTGACCAGATGACCCGTC 1557743 29 100.0 31 ............................. GCCAGCCACCCCACCTACGGCAAGGCGACAC 1557803 27 86.2 32 ................--..A..A..... ACGATGAAGGGCGCCACCGGCCCCTTCGCCGA 1557862 29 96.6 32 ..........T.................. TAGTTGACGGCGACCAGGAAGGGGATGTCCTC 1557923 28 82.8 0 ..........A.T....A.....-....A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCAGACCTGTCATCTCGGGCGGGACCTGCGGAAGCAGATAGATCACGATGCCGGCGATAACGGCGTTGTACGCGTCCTGCCACCCGGGGCGGCGGTATTGGAGTCTCACGGGCTTCCAACGCTGTGATTGCATGGTGTTGTCCTTCGTGCGATTGCTCTCGTGACGTGCGGACACTGCGGGGATCGCCCTGGCAGGGGCGGTCCCCGTCCGCGTTGCCGATGACGGTATGTGGTGGTTGCAGCGGTTGAGGTGGCCAAGGGCGAGCGTCGGCCATGGGGTCAACTCGCCCTGCCACCTGGGGCGTTGGTTGACTTACCCTAATCTTGAGGTAAGGCTATAGAGCGCTGACCTGCGGTTTCCCTCGACCCATCCACGCAGTCCACGTTAAAAGATCTACGATTGACTTAAAGTCGCCCTCTAGACCGAAGCGCCCACCTGCGCGCCGCAGACTGCGCGCGGCCTGCAAGCCGCACAACGCAGAGGCGCAACCAGTAGCCCG # Right flank : ACGGTCGTTTCGTTCCAACCTCGCAATTGATTGAGCTCATGGTCCGAGATCTCACCGGCGAAGCCACCATGAAGTAGTGCGAAACCTGGGCCAGGACCAAACACGAATCAACGGACTGAACGCTCAATTAGAAGCGCTAGGTCTGTCGCTCCTCACTCATCGACCCATCCGTGGGTAAATCGGACTAGCGATCTCAGTGTCACTGCATCGGGCACTCCCTTCGCTTTACGATGCCCTCAGTCGCGCTTCCTTCTGCTTAAATCTTTCTCCAGATACTATTGATCCTCGTGTCAGCCAAGCTGACGCCCTGGAGGGCGAGTGCAAGACGAAGAACGAGACTGGGCATTTTGGAGTCTCCTCGTCGCCATGCTCCAATTAGTGCTAGAAGTTATACGGTAGCTACCAACGAGACTCGCACGAGTCACCACCCCTCCCTTGCCATCGATTCCTTTCTCCGCATAAGCGGAGGTGAGCCGATTTAGGCAGACGGGAGATCTGGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //