Array 1 333-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATOL01000049.1 Serratia marcescens MC458 S_marcescensMC458-1.0-67.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 332 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 272 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 212 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 152 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 92 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : C # Right flank : AACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2311-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATOL01000065.1 Serratia marcescens MC458 S_marcescensMC458-1.0-86.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2310 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 2250 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 2190 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 2130 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 2070 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 2010 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 1950 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 1890 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 1830 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 1770 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 1710 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 1650 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 1590 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 1530 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 1470 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 1410 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 1350 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 1290 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 1230 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 1170 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 1110 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 1050 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 990 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 929 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 869 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 809 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 749 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 689 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 629 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 570 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 510 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 450 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 390 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 330 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 270 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 210 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 150 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 90 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-273 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATOL01000001.1 Serratia marcescens MC458 S_marcescensMC458-1.0-0.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 63 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 123 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 183 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 243 28 96.4 0 ....................A....... | A,A,G [263,266,269] ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8755-9861 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATOL01000001.1 Serratia marcescens MC458 S_marcescensMC458-1.0-0.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8755 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 8815 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 8875 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 8935 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 8995 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 9055 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 9115 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 9175 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 9235 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 9295 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 9355 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 9415 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 9475 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 9535 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 9595 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 9655 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 9715 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 9775 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 9835 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //