Array 1 190789-188564 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAW01000001.1 Clostridium tetani strain 75.97 contig_0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 190788 30 100.0 36 .............................. GCTATAAGAATAATTCTAATTTTATCCAAGGAACTG 190722 30 100.0 38 .............................. TTCCAATTTTACTAGCTGCTACCCCAACGCCTAATAAT 190654 30 100.0 37 .............................. TAAATATATTACTTCCTTCTTGCACTGTAGGTTTTTC 190587 30 100.0 35 .............................. TTGTTCGTAACTGTTAAAGCTATCTTTCTTTATGC 190522 30 100.0 37 .............................. AGAGCCTAGTTTCCTAAGCCCTTATAACCAACTTACC 190455 30 100.0 39 .............................. ATACAATGCTCCATGGAAAGGACTCCACTTAGATATATA 190386 30 100.0 36 .............................. CCCACATCATTAAAGGATATAAAATTACCACCTTCC 190320 30 100.0 37 .............................. GTTTTAATATTAATATCGGCAAGTGCTAATTCATATG 190253 30 100.0 36 .............................. AACTGCACAGTATCACCGCTAGCTTTTAATTCTTTA 190187 30 100.0 36 .............................. TTTTGAAGTATATTATAAAGGCACAGTAACACGCCC 190121 30 100.0 35 .............................. GCTTTAACTCTTAAAAAAGATAAAGTTCTAAATTC 190056 30 100.0 36 .............................. AAGATGCAGCCAACGCACTTGGATATATGGCTTTGG 189990 30 100.0 36 .............................. GGTAATGTAAGTAATTCTACAACCAATAATAGCAAT 189924 30 100.0 36 .............................. ATACAGAATACAAGATTATAGTTAGTGGATATAGAA 189858 30 100.0 38 .............................. AAATTTAGATAGACAAATAGAAGAATTACAAAAGTACC 189790 30 100.0 36 .............................. AATTTAATTATTGTAAACTCAATGTAATTGCATTGA 189724 30 100.0 37 .............................. CTTGATTGTAAAGAATTTAATAAAAAAGAAATTGTAA 189657 30 100.0 35 .............................. AATGAAGTCAAATAATAACATACCATTTTGTGCTC 189592 30 100.0 36 .............................. TTTAAATCTGGTTTATTTTTTACATTCTTCCAATCC 189526 30 100.0 37 .............................. AAGTGCGTTATTTACGCCTTCTATATGTCCGAATACC 189459 30 100.0 36 .............................. TTTTCATTAGCAATTCCTTTGTACTGCCATCTTCCG 189393 30 100.0 38 .............................. CCTAGTACGCCCAGCATACCCAAAAAAGAACTACTTAA 189325 30 100.0 38 .............................. CTGGAAAGAGGCAATAAAGCATTAGGAATAATAAAATG 189257 30 100.0 38 .............................. CTTACTAACACTTTCAGACCTAGTATTAAAATAATTTT 189189 30 100.0 37 .............................. GTGTTACATCTCCCAATTTCTCCTCATAATACTTTAA 189122 30 100.0 36 .............................. GCTATAGCTAGTATAGTAGATACGTTGCGAGAATGG 189056 30 100.0 37 .............................. AATTAATATTGGCAGTATATGCTATACCATCTATAGC 188989 30 100.0 38 .............................. TATCTAACTCAATATTTTCTTCTTTTACATCCTGTTTA 188921 30 100.0 36 .............................. AAATTAATAAAGATAGTAGGTTAAAGGGTATATTAG 188855 30 100.0 36 .............................. TTATAAAATTCTATTTCTAGTTCTTCTTGAGTATAT 188789 30 100.0 35 .............................. GTCGACCCATTGGAGTTAGACAGATGGGATTTTCA 188724 30 100.0 36 .............................. TTAGCATCTATAATATTTACTTCTTTAATAGTTCTT 188658 30 100.0 35 .............................. ATATGTGATGATGAATTAGAGAAAGTGCTTGAAAG 188593 30 96.7 0 ........................A..... | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.9 37 GTATTAGTAGCACCATATTGGAATGTAAAT # Left flank : AAGAATATGAACCATTTAAAATATGGTGGTAGGAGAGATTTAAATGTATGTTATATTAGTTTATGATATAAAAAGTGGTGAGGAGGGGCAGAGAGTTTTAAATAGAACTTTTAAGGTATGTAAAAAATATTTGTCCCATATTCAAAACTCAGTATTTGAAGGAGAATTAGCAGAGTCACAAATAATTAAACTAAAATATGAATTAGATGATATAATAAGAAAAGATAAAGATTCTGTAATATTATTCAAAAGTAGAAATAAAAGATGGTTAACTAAAGATATGTGGGGTAAAAAAGAAGATAGAACCAGTAACTTTATTTGATTGTCTACCTAAGATGATGTTAAAATATAAGGGAGTAGACAATTATAGTTATATTAATGGTTTATAAATTATTTAACATAACTTGTATTATAATAATAGACTATAAGAAATCCCAACTTAGTAGGTAGACAGAAATAGAAGTTATACTATAGACATATAGTGCATCATAGATGAACGC # Right flank : TGACTGTAACTATAGTATAAATAGGTAAATAGGGACGGTTAATGAATTTTTCAAAAGTATGATATAATAAAAACATAATTTACTTGATGAGGTATGATATGGATTTTAATGAAACAATATATAATAGAATATTAAAATTTGTTAAGGAGAATCCCGATAGTGTTTATTTGCCACAGGATTTTGATGAAGCGGGAAAGAAAGATGCATATTTTATTTTTAATGCGAAATGCGGAACGGAAAAATTTGAAATTGAAAATAGCAATAATTTAATTAAGCTTATATCAAATTATTTAAATGATGAAGCTCAATATAATGATTTAATAGAGTATATTCATGAGTTTCCAATAATAGTATATTATTTTGAGTTTTGTAGAATACTTGAAATGCAAATTAAGGAAAGCTTGTTAAGTAGGAAAAAGGTCATAGAGGTAGGAAAAAAATTTGTCACCGAAAGTAATGATAACGAACAGATAAAGCTTGGCATTGCTTTACTAGGGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGCACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 18474-17986 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAW01000014.1 Clostridium tetani strain 75.97 contig_0014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18473 30 100.0 34 .............................. AAATACGGAACTATTGTAGTTCTACAATTAGGGT 18409 30 100.0 36 .............................. TTAAGATTTACTTCATTTCCCCAACAGTCCCAACCT 18343 30 100.0 35 .............................. GTTATGCTGCAACTATGTGCTATGGTTGCAAGAAA 18278 30 100.0 36 .............................. TTTATATTTGGATTAACAGTTGTTAATTTAGCACCA 18212 30 100.0 34 .............................. AAAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 18148 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 18082 30 100.0 37 .............................. AAGATAATGAATACCAACCAGAAGAAGCAGCAAAAAC 18015 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.2 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTATTGGACTCTAAAAAAGACGATGAAATAACAATAATTAATAACTCTAAAATAGATGAGGGCAAATTCTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAAGGATGCTATCTTGTTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGCATAGATCTTAATTACAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATCTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 20746-20325 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAW01000014.1 Clostridium tetani strain 75.97 contig_0014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20745 30 100.0 36 .............................. TCCTTTGAATATCTTTGAAATATGGCTATTGCATAT 20679 30 100.0 35 .............................. ACTAAATCCACATCTTTGTATTTATCTTGTAGCTC 20614 30 100.0 37 .............................. AAATATATATGAGCATAGCTCAAAAGGAGAATTAATA 20547 30 100.0 35 .............................. TTTTGTAAGCATTCATTATCGTTGTTAAAACATCT 20482 30 100.0 34 .............................. GAAGTTTGCCGACCTAGATTGATACGGAACACAC 20418 30 100.0 34 .............................. ATTGCTGTAAGAGAATATATTTTATCTGGATTAA 20354 29 90.0 0 ................-.A...T....... | T [20341] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATAGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAATCATTTTGAGAATATACATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTTTATTCCTCTCCATTAACATATAATATTTCTCCTGATAGTGAGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCTCATATGCCACACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGCGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 25057-24895 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAW01000014.1 Clostridium tetani strain 75.97 contig_0014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25056 30 100.0 38 .............................. TCTAAATCTGGTAGATGGTTTTGAGGTAAGTTTTGTAC 24988 30 100.0 34 .............................. ACAATGAATAAAAAAGAATTAGTAGAAGCTTTAA 24924 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TACTTGTTAAACAAGTTGAAACTTATCAAAGTAGAAGACTAGAAGTTGCAAAAAGTATAGTGGAGGCTATTGGAGGTAATATATACGAGCTGTTATATCATTATTATAAACATGATAAAAAATCATAGCAAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGATTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAAACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGAAATGTAAGGAAAAATATGGTATAATGGCATTACCATAAATTTGTGGGAGTGATATTTTATGAATATCTTAACAAATTGTATTATTGGTTTTATTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATAAAAAATAAAGACACATGGTATGAGGGGAATCGTTTCTGCGGGACAATACTTTTAATAAGTAGTATTATTTTTATACCATTTTCAATATTAATAAAATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATGTTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //