Array 1 264641-266378 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXGP01000003.1 Escherichia coli strain NMG38 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 264641 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 264702 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 264763 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 264824 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 264885 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 264946 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 265007 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 265068 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 265129 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 265190 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 265251 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 265312 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 265373 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 265434 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 265495 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 265556 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 265617 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 265678 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 265739 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 265801 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 265862 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 265923 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 265984 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 266045 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 266106 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 266167 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 266228 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 266289 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 266350 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTATCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291928-292749 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXGP01000003.1 Escherichia coli strain NMG38 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 291928 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 291989 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 292050 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 292111 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 292172 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 292233 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 292294 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 292355 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 292416 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 292477 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 292538 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 292599 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 292660 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 292721 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //