Array 1 42399-42854 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLNP01000008.1 Escherichia coli strain MOD1-EC5501 MOD1-EC5501_8_length_166296_cov_61.141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42399 29 100.0 32 ............................. GCTGATGCGGTTCTATCACCACCACAAATTAT 42460 29 100.0 32 ............................. CAAATACGCGCGAGTGGCTAACCTGGAATCAT 42521 29 100.0 32 ............................. GCGCGGACGATAATCAGGGGCAGGCAGGGCAC 42582 29 100.0 32 ............................. AGGTATATGAAATTGAAGAAAGCTGCCCCATC 42643 29 100.0 32 ............................. GAAATCCAATATTAACGTGGTGTTTTCAAAAC 42704 29 100.0 32 ............................. CGTTTAGCTCCGCAATGCTGGATATCACTGAT 42765 29 96.6 32 ............T................ TATGGGAAACAGTAGCAACGGGCACACTGGCG 42826 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTAATCTCTTTCTAAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATAATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAGTTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGACTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68556-69560 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLNP01000008.1 Escherichia coli strain MOD1-EC5501 MOD1-EC5501_8_length_166296_cov_61.141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68556 29 100.0 32 ............................. GACTCAGTTTTTCCCTGCTGACCCTCCGAAGG 68617 29 100.0 32 ............................. CCATGCCGCGCCAGCTCTGCGAAACAGCCCGC 68678 29 100.0 32 ............................. GGCTATTGGGTTATTAAAGACCTGAATGAAAC 68739 29 100.0 32 ............................. CGCTACAGCTCCGGGCGAAACAGCGCGAAAAA 68800 29 100.0 32 ............................. ATCCAAAGATAGTCGCCCCGATTGCCAAATTG 68861 29 100.0 32 ............................. ACGGTATTGTTCAGATCCTGGCTTGCCAACAG 68922 29 100.0 32 ............................. GCGGCACTAACGTGATAATCACGATCAATTAT 68983 29 100.0 32 ............................. TGACGGTCCGAAAAAAGTTGGCTGAAGAAATT 69044 29 100.0 32 ............................. GTTATTGCGTTTTCCTCACCTGCGGCGAGTCC 69105 29 100.0 32 ............................. CATTCCGTGCAGCGGTCTGAATAATTGCCGCG 69166 29 96.6 32 ..........................T.. AGTAACGACGAAAAAATACAGGCACGGGCCAG 69227 29 100.0 32 ............................. ATCCCCGCAGGTATCGCGCAGCTATCGATCGA 69288 29 100.0 32 ............................. GGGTATAAAATAATATCGAACGCAGCAGCAAC 69349 29 100.0 32 ............................. GGCAGCGCGAAACGCACGCCGACACGCTGGCA 69410 29 96.6 32 ............C................ CAGCGTTATGCGACGGGTGAAGACGCCGACGA 69471 29 96.6 32 ............C................ GGTAAAAACACGGTCTGAGCCGACATTCATGT 69532 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTTTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //