Array 1 464966-466123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNM010000010.1 Listeria monocytogenes strain 2014L-6350 NODE_2_length_469763_cov_49.0305_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 464966 36 100.0 30 .................................... GGCGAAAATTATCCAAAGCGCTTCAAATCT 465032 36 100.0 30 .................................... GTAGTCGTTCAAAACTAGGATTAGAGAAGG 465098 36 100.0 30 .................................... TGCTTTAACTGTAGCCTTTACACTACTTTT 465164 36 100.0 30 .................................... AAACTCAATTGACAATAAATATACAGGTTT 465230 36 100.0 30 .................................... AGCATCTATGCACCAGATAACCAACGCGAT 465296 36 100.0 30 .................................... ACATACGCATACAGGTTTATGTGTGGAGGC 465362 36 100.0 30 .................................... CGCTTGATGTTCCCCCTCTGAAATATCAGA 465428 36 100.0 30 .................................... TTTTAACGACTTTCGTTCAGGTCGAATGTT 465494 36 100.0 30 .................................... TTCATCTGTACCCTATCAAGTATTAGCCGA 465560 36 100.0 30 .................................... TTCAATAAGAGCTACCGCTTTCGTCACTTC 465626 36 100.0 30 .................................... GAGTACGCTTATAAAGTATTTGAACTAAAT 465692 36 100.0 30 .................................... AAGCGGATTTTGCGAATTCAAAACAATCAA 465758 36 100.0 30 .................................... TTATAGAATTGAGTTGAATTTGACCCATGT 465824 36 100.0 30 .................................... TTGCTCTGTTTTCAATGATGTTTGGGAATG 465890 36 100.0 30 .................................... AGTTTCTGCTGCGGAAATGTTCAAGGCAAT 465956 36 100.0 30 .................................... AATAGTAAATGTAGATGGTTCGACGGTAGA 466022 36 100.0 30 .................................... ATCGGGAATCACGAAGCTTGGATTGGAGTA 466088 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAATTGGATTTAGAAGAAGATGAAATAACCGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGACAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATCTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACTGACACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAAAAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 34997-34582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNM010000003.1 Listeria monocytogenes strain 2014L-6350 NODE_13_length_58339_cov_43.845_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 34996 29 100.0 34 ............................. CTGTTTTTTAATCCTTTAATCGCTCCTGCTTTAG 34933 29 100.0 35 ............................. TGAATATTAGTGCAACATGTAGTTGCCCGTTAGCG 34869 29 100.0 34 ............................. CTATTCAATTTTGTGTTATTCCAGACTGGAAGTC 34806 29 100.0 37 ............................. GTGGAAGAGGTCAGTAAACCGGAAATGATGGAGGGAA 34740 29 100.0 36 ............................. TATGAATGGGTGAATGAATATGTAGATAGTAAGCGA 34675 29 100.0 36 ............................. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATAG 34610 29 75.9 0 T.....A........CA.AG...A..... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 96.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCGGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCAACCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGCGGGAAGAGGGACTTGGCGATATTTGCTTGGGGAAACCTTCCGGATAAGAGAGGATTTTTGCTATTTTTAGGTAGGTCGACAGAAAGGAGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCACGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCAATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCACCAATTTTCTTGTTTTTCACTAGTTTTAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //