Array 1 1-1250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXQ010000030.1 Erwinia amylovora strain 1609 Ea_1609_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 62 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 123 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 184 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 245 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 306 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 367 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 428 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 489 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 550 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 611 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 673 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 734 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 795 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 856 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 917 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 978 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 1039 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 1100 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 1161 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 1222 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10714-11042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXQ010000030.1 Erwinia amylovora strain 1609 Ea_1609_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10714 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 10774 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 10834 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 10894 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 10954 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 11015 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 178808-183991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXQ010000009.1 Erwinia amylovora strain 1609 Ea_1609_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 178808 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 178869 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 178930 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 178991 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 179052 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 179113 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 179174 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 179235 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 179296 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 179357 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 179418 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 179479 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 179540 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 179601 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 179662 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 179723 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 179784 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 179845 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 179906 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 179967 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 180028 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 180089 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 180150 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 180211 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 180272 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 180333 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 180394 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 180455 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 180516 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 180577 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 180638 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 180699 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 180760 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 180821 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 180882 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 180943 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 181004 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 181065 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 181126 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 181187 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 181248 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 181309 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 181370 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 181431 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 181492 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 181553 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 181614 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 181675 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 181736 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 181797 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 181858 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 181919 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 181980 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 182041 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 182102 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 182163 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 182224 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 182285 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 182346 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 182407 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 182468 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 182529 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 182590 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 182651 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 182712 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 182773 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 182834 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 182895 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 182956 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 183017 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 183078 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 183139 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 183200 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 183261 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 183322 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 183383 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 183444 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 183536 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 183597 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 183658 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 183719 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 183780 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 183841 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 183902 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 183963 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 85 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193046-194539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXQ010000009.1 Erwinia amylovora strain 1609 Ea_1609_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193046 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 193107 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 193168 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 193229 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 193290 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 193351 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 193412 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 193473 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 193534 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 193595 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 193656 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 193717 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 193778 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 193839 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 193900 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 193961 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 194022 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 194083 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 194145 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 194206 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 194267 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 194328 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 194389 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 194450 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 194511 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCCCCGCCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGGACGAGATTTCACAGAAAATATCTGTTCGTGTTCCCCGCGTATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //