Array 1 18990-18754 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VEGY01000011.1 Bacillus pumilus SAFR-032 strain DE0078 NODE_11_length_131284_cov_16.646155, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     18989	    32	 100.0	    34	................................	CGATGCCTTATCACATCTGCAACTTTGATATGTA   	
     18923	    32	 100.0	    36	................................	CGCGATCACCTAACGTGATACGTTGCTGTGCTGTGG 	
     18855	    32	 100.0	    37	................................	ACATCAAGCGTCAGCTGATAAGTTCGAGCAAGGTCAC	
     18786	    32	  90.6	     0	...................GA......A....	|                                    	T [18757]
==========	======	======	======	================================	=====================================	==================
         4	    32	  97.7	    36	GTCGCACTCTACATGAGTGCGTGGATTGAAAT	                                     	       

# Left flank :   ACTCTACTTGAGTGTGTGGATTGAAATAATGCCGTTGTTATGTTTTGGCGATCAGCAACCATGTCGCACTCTCCAGGAGTGATTTGAATTTTGAAAAACAATAGCAGCATCATACATCGTAATTGATATGAGTATCTAAATAAAGTCTATCGTGAGTAGGTACCTTGAAAGGAATATTGACAAATGCACTTCATATAAGTGTGAAAATCATAACTCTCGCATCTGATCCAGTAGTCATGTATTTAGTGAATTCAAAGTTGTTGCTGGAATAAGTATGATGAACAAGTTTCAATAGATTTAAATAAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCATTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA
# Right flank :  TGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGAGAACATAAAATCCCTGAAACATTCGCACCGTTTCATTCAATAAAATGAGAAAAAGTGTAAATTATTTAGAAGGGAAAACAAAATTCTATATAGAAACTTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTGGGGCGGAAATCGCAGTCGCACTCTACATGAGTGTGTGGATTGAAATACGATGATGTTGTGGACGTCGGATGTAAGGCGGTGTGGCACTTTATATGAGTGCGTGGATTGAAATTTGTAAAACTTAGCATTGAATTTTGTGGCTGCCCATGCACTCTACATGAGTGCATGGATTGAAAGAAGTAAGATCATTAAAACAAACAGAATGAATTGCAGTCGCACTTTACAT

# Questionable array : NO	 Score: 8.75
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACTCTACATGAGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.60,-4.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//


Array 1 52-182 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VEGY01000172.1 Bacillus pumilus SAFR-032 strain DE0078 NODE_174_length_269_cov_0.666667, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence        	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=======================	===================================	==================
        52	    23	 100.0	    27	.......................	TTAGGAAAACCAACTCCTTGGCTCACA        	
       102	    23	 100.0	    35	.......................	ATTATTGTGCCAACTCCTTGGCTCACAAGTCGGAG	
       160	    23	 100.0	     0	.......................	|                                  	
==========	======	======	======	=======================	===================================	==================
         3	    23	 100.0	    32	GCCAAGCGGTCTTAGGAAGACAA	                                   	       

# Left flank :   CCACCTCCTGGGCCCACAGCAGGACCCGGCTGCGCTCCGACTTAGTCGGAGG
# Right flank :  GGGTTAAGGGCAACTCCTTGGCTCACAGAACGACATGGCTACGATCCGACTTGGAAGACAAGGGTTAAGGGCAACTCCTTGGCTCAC

# Questionable array : NO	 Score: 2.56
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCCAAGCGGTCTTAGGAAGACAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.37,0.27   Confidence: LOW] 

# Array family : NA
//